RNA–Protein interactions for RNA: ENST00000553709.5

ARHGEF40-202, Transcript of Rho guanine nucleotide exchange factor 40, humanhuman

TSL 1 (best)

Gene ARHGEF40, Length 5,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF40-202ENST00000553709 ADGRL1O94910 1474 aa18.82■□□□□ 0.6
ARHGEF40-202ENST00000553709 H3BQV1 296 aa18.81■□□□□ 0.6
ARHGEF40-202ENST00000553709 IFFO2Q5TF58 517 aa18.81■□□□□ 0.6
ARHGEF40-202ENST00000553709 RAPGEF3O95398 923 aa18.8■□□□□ 0.6
ARHGEF40-202ENST00000553709 FOXD4L6Q3SYB3 417 aaPredicted RBP18.8■□□□□ 0.6
ARHGEF40-202ENST00000553709 FOXD4L3Q6VB84 417 aaPredicted RBP18.8■□□□□ 0.6
ARHGEF40-202ENST00000553709 RUFY2Q8WXA3 655 aa18.8■□□□□ 0.6
ARHGEF40-202ENST00000553709 CDCA7LQ96GN5 454 aa18.8■□□□□ 0.6
ARHGEF40-202ENST00000553709 TOMM22Q9NS69 142 aa18.8■□□□□ 0.6
ARHGEF40-202ENST00000553709 EIF2S2P20042 333 aaKnown RBP18.8■□□□□ 0.6
ARHGEF40-202ENST00000553709 CLSTN1O94985 981 aa18.8■□□□□ 0.6
ARHGEF40-202ENST00000553709 GGNBP2Q9H3C7 697 aa18.79■□□□□ 0.6
ARHGEF40-202ENST00000553709 CEP170Q5SW79 1584 aa18.79■□□□□ 0.6
ARHGEF40-202ENST00000553709 FAM184AQ8NB25 1140 aa18.79■□□□□ 0.6
ARHGEF40-202ENST00000553709 CHMP4CQ96CF2 233 aa18.79■□□□□ 0.6
ARHGEF40-202ENST00000553709 LNPKQ9C0E8 428 aa18.79■□□□□ 0.6
ARHGEF40-202ENST00000553709 C9orf78Q9NZ63 289 aaPredicted RBP18.79■□□□□ 0.6
ARHGEF40-202ENST00000553709 NEXNQ0ZGT2 675 aa18.79■□□□□ 0.6
ARHGEF40-202ENST00000553709 RSPH6AQ9H0K4 717 aa18.79■□□□□ 0.6
ARHGEF40-202ENST00000553709 PPP2R1AP30153 589 aa18.78■□□□□ 0.6
ARHGEF40-202ENST00000553709 C22orf23Q9BZE7 217 aa18.78■□□□□ 0.6
ARHGEF40-202ENST00000553709 FKBP5Q13451 457 aaPredicted RBP18.77■□□□□ 0.6
ARHGEF40-202ENST00000553709 ZKSCAN1P17029 563 aaPredicted RBP18.77■□□□□ 0.6
ARHGEF40-202ENST00000553709 HMOX1P09601 288 aa18.77■□□□□ 0.59
ARHGEF40-202ENST00000553709 RASSF8Q8NHQ8 419 aa18.77■□□□□ 0.59
ARHGEF40-202ENST00000553709 FANCAO15360 1455 aa18.77■□□□□ 0.59
ARHGEF40-202ENST00000553709 INTS3Q68E01 1043 aaKnown RBP18.76■□□□□ 0.59
ARHGEF40-202ENST00000553709 CABP2Q9NPB3 220 aa18.76■□□□□ 0.59
ARHGEF40-202ENST00000553709 PLCH2O75038 1416 aa18.76■□□□□ 0.59
ARHGEF40-202ENST00000553709 MTHFSP49914 203 aa18.76■□□□□ 0.59
ARHGEF40-202ENST00000553709 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.76■□□□□ 0.59
ARHGEF40-202ENST00000553709 NECTIN2Q92692 538 aa18.76■□□□□ 0.59
ARHGEF40-202ENST00000553709 TMEM132EQ6IEE7 984 aa18.76■□□□□ 0.59
ARHGEF40-202ENST00000553709 TCP11L2Q8N4U5 519 aa18.76■□□□□ 0.59
ARHGEF40-202ENST00000553709 TMX4Q9H1E5 349 aaPredicted RBP18.75■□□□□ 0.59
ARHGEF40-202ENST00000553709 ANO2Q9NQ90 1003 aa18.75■□□□□ 0.59
ARHGEF40-202ENST00000553709 CFAP70Q5T0N1 1121 aa18.75■□□□□ 0.59
ARHGEF40-202ENST00000553709 IFIT2P09913 472 aaKnown RBP18.74■□□□□ 0.59
ARHGEF40-202ENST00000553709 NBPF1Q3BBV0 1214 aa18.74■□□□□ 0.59
ARHGEF40-202ENST00000553709 NFKBIBQ15653 356 aa18.73■□□□□ 0.59
ARHGEF40-202ENST00000553709 TTC5Q8N0Z6 440 aa18.73■□□□□ 0.59
ARHGEF40-202ENST00000553709 TSPYL4Q9UJ04 414 aa18.73■□□□□ 0.59
ARHGEF40-202ENST00000553709 GOLGA6L19H0YKK7 550 aa18.73■□□□□ 0.59
ARHGEF40-202ENST00000553709 FRAT2O75474 233 aaPredicted RBP18.72■□□□□ 0.59
ARHGEF40-202ENST00000553709 NUCB2P80303 420 aa18.72■□□□□ 0.59
ARHGEF40-202ENST00000553709 LRRFIP1Q32MZ4 808 aaKnown RBP18.72■□□□□ 0.59
ARHGEF40-202ENST00000553709 BECN2A8MW95 431 aa18.71■□□□□ 0.59
ARHGEF40-202ENST00000553709 GTF2E1P29083 439 aaPredicted RBP18.71■□□□□ 0.59
ARHGEF40-202ENST00000553709 ABCC2Q92887 1545 aa18.71■□□□□ 0.59
ARHGEF40-202ENST00000553709 DDX58O95786 925 aaKnown RBP18.71■□□□□ 0.59
ARHGEF40-202ENST00000553709 HSP90AA2PQ14568 343 aaPredicted RBP18.71■□□□□ 0.59
ARHGEF40-202ENST00000553709 CREBRFQ8IUR6 639 aa18.7■□□□□ 0.58
ARHGEF40-202ENST00000553709 PNISRQ8TF01 805 aaKnown RBP18.7■□□□□ 0.58
ARHGEF40-202ENST00000553709 ASXL2Q76L83 1435 aa18.7■□□□□ 0.58
ARHGEF40-202ENST00000553709 RPRD2Q5VT52 1461 aaKnown RBP18.69■□□□□ 0.58
ARHGEF40-202ENST00000553709 WDR7Q9Y4E6 1490 aa18.69■□□□□ 0.58
ARHGEF40-202ENST00000553709 CDC45O75419 566 aa18.69■□□□□ 0.58
ARHGEF40-202ENST00000553709 MCTP1Q6DN14 999 aa18.69■□□□□ 0.58
ARHGEF40-202ENST00000553709 SLC52A1Q9NWF4 448 aa18.69■□□□□ 0.58
ARHGEF40-202ENST00000553709 MAPKBP1O60336 1514 aa18.69■□□□□ 0.58
ARHGEF40-202ENST00000553709 HSP90AB4PQ58FF6 505 aa18.68■□□□□ 0.58
ARHGEF40-202ENST00000553709 G3BP1Q13283 466 aaKnown RBP eCLIP18.68■□□□□ 0.582e-6■□□□□ 10.4
ARHGEF40-202ENST00000553709 RNF20Q5VTR2 975 aa18.68■□□□□ 0.58
ARHGEF40-202ENST00000553709 PDE3AQ14432 1141 aa18.68■□□□□ 0.58
ARHGEF40-202ENST00000553709 CPLX2Q6PUV4 134 aaKnown RBP18.67■□□□□ 0.58
ARHGEF40-202ENST00000553709 SYCP2Q9BX26 1530 aa18.67■□□□□ 0.58
ARHGEF40-202ENST00000553709 TPM3P06753 285 aa18.67■□□□□ 0.58
ARHGEF40-202ENST00000553709 PSME1Q06323 249 aa18.67■□□□□ 0.58
ARHGEF40-202ENST00000553709 NOC3LQ8WTT2 800 aaKnown RBP18.66■□□□□ 0.58
ARHGEF40-202ENST00000553709 AEBP2Q6ZN18 517 aaPredicted RBP18.66■□□□□ 0.58
ARHGEF40-202ENST00000553709 RPGRIP1LQ68CZ1 1315 aa18.65■□□□□ 0.58
ARHGEF40-202ENST00000553709 SYNE3Q6ZMZ3 975 aa18.65■□□□□ 0.58
ARHGEF40-202ENST00000553709 SMG6Q86US8 1419 aaKnown RBP18.65■□□□□ 0.58
ARHGEF40-202ENST00000553709 ERBINQ96RT1 1412 aa18.65■□□□□ 0.58
ARHGEF40-202ENST00000553709 ERC2O15083 957 aa18.65■□□□□ 0.58
ARHGEF40-202ENST00000553709 AKAP17AQ02040 695 aaKnown RBP18.65■□□□□ 0.58
ARHGEF40-202ENST00000553709 EXOSC9Q06265 439 aaKnown RBP18.65■□□□□ 0.58
ARHGEF40-202ENST00000553709 SMC3Q9UQE7 1217 aa18.65■□□□□ 0.58
ARHGEF40-202ENST00000553709 PDZRN3Q9UPQ7 1066 aa18.64■□□□□ 0.57
ARHGEF40-202ENST00000553709 DENND4BO75064 1496 aaPredicted RBP18.64■□□□□ 0.57
ARHGEF40-202ENST00000553709 SHANK2Q9UPX8 1470 aa18.64■□□□□ 0.57
ARHGEF40-202ENST00000553709 GOLGA6L1Q8N7Z2 621 aa18.64■□□□□ 0.57
ARHGEF40-202ENST00000553709 VSIG10Q8N0Z9 540 aa18.63■□□□□ 0.57
ARHGEF40-202ENST00000553709 DHX29Q7Z478 1369 aaKnown RBP18.63■□□□□ 0.57
ARHGEF40-202ENST00000553709 DUOX2Q9NRD8 1548 aa18.63■□□□□ 0.57
ARHGEF40-202ENST00000553709 VPS37CA5D8V6 355 aaPredicted RBP18.63■□□□□ 0.57
ARHGEF40-202ENST00000553709 DNMT1P26358 1616 aaKnown RBP18.63■□□□□ 0.57
ARHGEF40-202ENST00000553709 PRKAR2BP31323 418 aa18.62■□□□□ 0.57
ARHGEF40-202ENST00000553709 EVA1CP58658 441 aa18.62■□□□□ 0.57
ARHGEF40-202ENST00000553709 TPD52L1Q16890 204 aaPredicted RBP18.62■□□□□ 0.57
ARHGEF40-202ENST00000553709 CCDC184Q52MB2 194 aa18.62■□□□□ 0.57
ARHGEF40-202ENST00000553709 BICD2Q8TD16 824 aa18.62■□□□□ 0.57
ARHGEF40-202ENST00000553709 CPLX1O14810 134 aa18.61■□□□□ 0.57
ARHGEF40-202ENST00000553709 UBTFL1P0CB47 393 aaPredicted RBP18.61■□□□□ 0.57
ARHGEF40-202ENST00000553709 BCAR3O75815 825 aa18.61■□□□□ 0.57
ARHGEF40-202ENST00000553709 G3V3G9 751 aa18.61■□□□□ 0.57
ARHGEF40-202ENST00000553709 DCAF8Q5TAQ9 597 aa18.61■□□□□ 0.57
ARHGEF40-202ENST00000553709 MARCH6O60337 910 aa18.6■□□□□ 0.57
ARHGEF40-202ENST00000553709 TRIM29Q14134 588 aa18.6■□□□□ 0.57
ARHGEF40-202ENST00000553709 SLC12A5Q9H2X9 1139 aa18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms