RNA–Protein interactions for RNA: ENST00000553683.1

VRK1-202, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 247 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-202ENST00000553683 RIC3Q7Z5B4 369 aa7.64□□□□□ -1.19
VRK1-202ENST00000553683 NKX2-3Q8TAU0 364 aa7.64□□□□□ -1.19
VRK1-202ENST00000553683 USB1Q9BQ65 265 aaKnown RBP7.64□□□□□ -1.19
VRK1-202ENST00000553683 SLC6A16Q9GZN6 736 aa7.64□□□□□ -1.19
VRK1-202ENST00000553683 SKIV2LQ15477 1246 aaKnown RBP7.63□□□□□ -1.19
VRK1-202ENST00000553683 PPP1R18Q6NYC8 613 aa7.63□□□□□ -1.19
VRK1-202ENST00000553683 RETREG3Q86VR2 466 aa7.63□□□□□ -1.19
VRK1-202ENST00000553683 PLEKHG3A1L390 1219 aa7.62□□□□□ -1.19
VRK1-202ENST00000553683 TLL1O43897 1013 aa7.62□□□□□ -1.19
VRK1-202ENST00000553683 MMP16P51512 607 aa7.62□□□□□ -1.19
VRK1-202ENST00000553683 DESI1Q6ICB0 168 aa7.62□□□□□ -1.19
VRK1-202ENST00000553683 RNF19BQ6ZMZ0 732 aa7.62□□□□□ -1.19
VRK1-202ENST00000553683 ANKLE1Q8NAG6 615 aa7.62□□□□□ -1.19
VRK1-202ENST00000553683 PCDHGC3Q9UN70 934 aa7.62□□□□□ -1.19
VRK1-202ENST00000553683 NDUFV2P19404 249 aa7.61□□□□□ -1.19
VRK1-202ENST00000553683 CLK2P49760 499 aaKnown RBP7.61□□□□□ -1.19
VRK1-202ENST00000553683 MTMR2Q13614 643 aa7.61□□□□□ -1.19
VRK1-202ENST00000553683 FAM160A2Q8N612 972 aaPredicted RBP7.61□□□□□ -1.19
VRK1-202ENST00000553683 ZBTB3Q9H5J0 574 aa7.61□□□□□ -1.19
VRK1-202ENST00000553683 HLA-CQ95604 372 aa7.6□□□□□ -1.19
VRK1-202ENST00000553683 RNF223E7ERA6 249 aa7.59□□□□□ -1.19
VRK1-202ENST00000553683 DXOO77932 396 aaKnown RBP7.59□□□□□ -1.19
VRK1-202ENST00000553683 S1PR4O95977 384 aa7.59□□□□□ -1.19
VRK1-202ENST00000553683 GUCA2AQ02747 115 aa7.59□□□□□ -1.19
VRK1-202ENST00000553683 C6orf229H3BNL8 230 aa7.58□□□□□ -1.2
VRK1-202ENST00000553683 LILRB3O75022 631 aa7.58□□□□□ -1.2
VRK1-202ENST00000553683 LIMD1Q9UGP4 676 aa7.58□□□□□ -1.2
VRK1-202ENST00000553683 V9GY48 417 aaPredicted RBP7.58□□□□□ -1.2
VRK1-202ENST00000553683 JUNDP17535 347 aa7.57□□□□□ -1.2
VRK1-202ENST00000553683 HRCP23327 699 aa7.57□□□□□ -1.2
VRK1-202ENST00000553683 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.57□□□□□ -1.2
VRK1-202ENST00000553683 PCDHB15Q9Y5E8 787 aa7.57□□□□□ -1.2
VRK1-202ENST00000553683 PPP2R2DQ66LE6 453 aa7.56□□□□□ -1.2
VRK1-202ENST00000553683 PRR7Q8TB68 274 aa7.55□□□□□ -1.2
VRK1-202ENST00000553683 RPIAP49247 311 aa7.54□□□□□ -1.2
VRK1-202ENST00000553683 PTPRNQ16849 979 aa7.54□□□□□ -1.2
VRK1-202ENST00000553683 IL27Q8NEV9 243 aa7.54□□□□□ -1.2
VRK1-202ENST00000553683 SYMPKQ92797 1274 aaKnown RBP7.54□□□□□ -1.2
VRK1-202ENST00000553683 PCMTD1Q96MG8 357 aaPredicted RBP7.54□□□□□ -1.2
VRK1-202ENST00000553683 POLR3EQ9NVU0 708 aa7.54□□□□□ -1.2
VRK1-202ENST00000553683 NUTM2BA6NNL0 878 aaPredicted RBP7.53□□□□□ -1.2
VRK1-202ENST00000553683 NUTM2EB1AL46 878 aaPredicted RBP7.53□□□□□ -1.2
VRK1-202ENST00000553683 NUTM2DQ5VT03 806 aaPredicted RBP7.53□□□□□ -1.2
VRK1-202ENST00000553683 NUTM2AQ8IVF1 878 aaPredicted RBP7.53□□□□□ -1.2
VRK1-202ENST00000553683 QPCTQ16769 361 aa7.52□□□□□ -1.21
VRK1-202ENST00000553683 PRDM9Q9NQV7 894 aa7.52□□□□□ -1.21
VRK1-202ENST00000553683 FCF1Q9Y324 198 aaKnown RBP7.52□□□□□ -1.21
VRK1-202ENST00000553683 LYPD8Q6UX82 237 aa7.51□□□□□ -1.21
VRK1-202ENST00000553683 HELBQ8NG08 1087 aaPredicted RBP7.51□□□□□ -1.21
VRK1-202ENST00000553683 CFAP99D6REC4 459 aa7.5□□□□□ -1.21
VRK1-202ENST00000553683 SLC19A1P41440 591 aa7.5□□□□□ -1.21
VRK1-202ENST00000553683 PROCA1Q8NCQ7 364 aaPredicted RBP7.5□□□□□ -1.21
VRK1-202ENST00000553683 CABLES1Q8TDN4 633 aa7.5□□□□□ -1.21
VRK1-202ENST00000553683 NUDT12Q9BQG2 462 aa7.5□□□□□ -1.21
VRK1-202ENST00000553683 PRKD2Q9BZL6 878 aa7.5□□□□□ -1.21
VRK1-202ENST00000553683 EVA1BQ9NVM1 165 aa7.5□□□□□ -1.21
VRK1-202ENST00000553683 PPEF1O14829 653 aaPredicted RBP7.49□□□□□ -1.21
VRK1-202ENST00000553683 ZBTB24O43167 697 aaPredicted RBP7.49□□□□□ -1.21
VRK1-202ENST00000553683 CD2BP2O95400 341 aaKnown RBP7.49□□□□□ -1.21
VRK1-202ENST00000553683 CCNYL3P0C7X3 344 aa7.49□□□□□ -1.21
VRK1-202ENST00000553683 CSPP1Q1MSJ5 1256 aa7.49□□□□□ -1.21
VRK1-202ENST00000553683 TMEM259Q4ZIN3 620 aa7.48□□□□□ -1.21
VRK1-202ENST00000553683 RTL5Q5HYW3 569 aaPredicted RBP7.48□□□□□ -1.21
VRK1-202ENST00000553683 SPRYD7Q5W111 196 aa7.48□□□□□ -1.21
VRK1-202ENST00000553683 ZNF598Q86UK7 904 aaKnown RBP7.48□□□□□ -1.21
VRK1-202ENST00000553683 PLA2G2CQ5R387 149 aa7.47□□□□□ -1.21
VRK1-202ENST00000553683 LIAT1Q6ZQX7 453 aa7.47□□□□□ -1.21
VRK1-202ENST00000553683 EMID1Q96A84 441 aaPredicted RBP7.47□□□□□ -1.21
VRK1-202ENST00000553683 SOCS7O14512 581 aa7.46□□□□□ -1.22
VRK1-202ENST00000553683 KCNH2Q12809 1159 aa7.46□□□□□ -1.22
VRK1-202ENST00000553683 F12P00748 615 aaPredicted RBP7.45□□□□□ -1.22
VRK1-202ENST00000553683 RFC5P40937 340 aa7.45□□□□□ -1.22
VRK1-202ENST00000553683 WNT7BP56706 349 aa7.45□□□□□ -1.22
VRK1-202ENST00000553683 BANK1Q8NDB2 785 aa7.45□□□□□ -1.22
VRK1-202ENST00000553683 ATP1B4Q9UN42 357 aaPredicted RBP7.45□□□□□ -1.22
VRK1-202ENST00000553683 TRIM32Q13049 653 aa7.44□□□□□ -1.22
VRK1-202ENST00000553683 LAPTM4AQ15012 233 aa7.44□□□□□ -1.22
VRK1-202ENST00000553683 TMEM132AQ24JP5 1023 aa7.44□□□□□ -1.22
VRK1-202ENST00000553683 CCDC24Q8N4L8 307 aa7.44□□□□□ -1.22
VRK1-202ENST00000553683 PRR20EP86478 221 aa7.43□□□□□ -1.22
VRK1-202ENST00000553683 PRR20CP86479 221 aa7.43□□□□□ -1.22
VRK1-202ENST00000553683 PRR20DP86480 221 aa7.43□□□□□ -1.22
VRK1-202ENST00000553683 PRR20BP86481 221 aa7.43□□□□□ -1.22
VRK1-202ENST00000553683 PRR20AP86496 221 aa7.43□□□□□ -1.22
VRK1-202ENST00000553683 ARMC2Q8NEN0 867 aa7.43□□□□□ -1.22
VRK1-202ENST00000553683 PER1O15534 1290 aaPredicted RBP7.41□□□□□ -1.22
VRK1-202ENST00000553683 CTDSPL2Q05D32 466 aa7.41□□□□□ -1.22
VRK1-202ENST00000553683 ZNF697Q5TEC3 545 aa7.41□□□□□ -1.22
VRK1-202ENST00000553683 FBXO31Q5XUX0 539 aaPredicted RBP7.41□□□□□ -1.22
VRK1-202ENST00000553683 TSC1Q92574 1164 aa7.41□□□□□ -1.22
VRK1-202ENST00000553683 GPKOWQ92917 476 aaPredicted RBP eCLIP7.41□□□□□ -1.22
VRK1-202ENST00000553683 UNC93B1Q9H1C4 597 aa7.41□□□□□ -1.22
VRK1-202ENST00000553683 WNT7AO00755 349 aa7.4□□□□□ -1.22
VRK1-202ENST00000553683 PTCRAQ6ISU1 281 aaPredicted RBP7.4□□□□□ -1.22
VRK1-202ENST00000553683 ZC3H4Q9UPT8 1303 aaKnown RBP7.4□□□□□ -1.22
VRK1-202ENST00000553683 AP1G2O75843 785 aa7.39□□□□□ -1.23
VRK1-202ENST00000553683 CTHP32929 405 aa7.39□□□□□ -1.23
VRK1-202ENST00000553683 PNMA1Q8ND90 353 aa7.39□□□□□ -1.23
VRK1-202ENST00000553683 APBB1O00213 710 aa7.38□□□□□ -1.23
VRK1-202ENST00000553683 GDF9O60383 454 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms