RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 BRPF3Q9ULD4 1205 aa7.08□□□□□ -1.28
LIMA1-212ENST00000552491 KNSTRNQ9Y448 316 aa7.08□□□□□ -1.28
LIMA1-212ENST00000552491 RGS3P49796 1198 aa7.08□□□□□ -1.28
LIMA1-212ENST00000552491 WDR43Q15061 677 aaKnown RBP eCLIP7.08□□□□□ -1.28
LIMA1-212ENST00000552491 FAM161AQ3B820 660 aa7.08□□□□□ -1.28
LIMA1-212ENST00000552491 TRMT2AQ8IZ69 625 aaKnown RBP7.08□□□□□ -1.28
LIMA1-212ENST00000552491 MYOM1P52179 1685 aa7.07□□□□□ -1.28
LIMA1-212ENST00000552491 BCAR3O75815 825 aa7.07□□□□□ -1.28
LIMA1-212ENST00000552491 TRPC6Q9Y210 931 aa7.07□□□□□ -1.28
LIMA1-212ENST00000552491 CLASP1Q7Z460 1538 aa7.07□□□□□ -1.28
LIMA1-212ENST00000552491 DUOX2Q9NRD8 1548 aa7.07□□□□□ -1.28
LIMA1-212ENST00000552491 APAF1O14727 1248 aa7.06□□□□□ -1.28
LIMA1-212ENST00000552491 GSE1Q14687 1217 aa7.06□□□□□ -1.28
LIMA1-212ENST00000552491 FRAT1Q92837 279 aaPredicted RBP7.06□□□□□ -1.28
LIMA1-212ENST00000552491 ASXL1Q8IXJ9 1541 aa7.06□□□□□ -1.28
LIMA1-212ENST00000552491 SYNMO15061 1565 aa7.06□□□□□ -1.28
LIMA1-212ENST00000552491 IGHDP01880 384 aa7.06□□□□□ -1.28
LIMA1-212ENST00000552491 PIK3C2GO75747 1445 aa7.06□□□□□ -1.28
LIMA1-212ENST00000552491 USP19O94966 1318 aa7.05□□□□□ -1.28
LIMA1-212ENST00000552491 FRAT2O75474 233 aaPredicted RBP7.05□□□□□ -1.28
LIMA1-212ENST00000552491 SPHKAPQ2M3C7 1700 aa7.05□□□□□ -1.28
LIMA1-212ENST00000552491 ERCC6L2Q5T890 1561 aa7.05□□□□□ -1.28
LIMA1-212ENST00000552491 SCAF11Q99590 1463 aaKnown RBP7.05□□□□□ -1.28
LIMA1-212ENST00000552491 TRAPPC8Q9Y2L5 1435 aa7.05□□□□□ -1.28
LIMA1-212ENST00000552491 CCDC61Q9Y6R9 512 aa7.04□□□□□ -1.28
LIMA1-212ENST00000552491 CLTCL1P53675 1640 aa7.04□□□□□ -1.28
LIMA1-212ENST00000552491 NKTRP30414 1462 aaKnown RBP7.04□□□□□ -1.28
LIMA1-212ENST00000552491 SEC24BO95487 1268 aa7.04□□□□□ -1.28
LIMA1-212ENST00000552491 CDAN1Q8IWY9 1227 aa7.04□□□□□ -1.28
LIMA1-212ENST00000552491 BMP2KQ9NSY1 1161 aaPredicted RBP7.04□□□□□ -1.28
LIMA1-212ENST00000552491 ABCC2Q92887 1545 aa7.04□□□□□ -1.28
LIMA1-212ENST00000552491 EIF3AQ14152 1382 aaKnown RBP7.04□□□□□ -1.28
LIMA1-212ENST00000552491 GOLGA6L2Q8N9W4 650 aaPredicted RBP7.04□□□□□ -1.28
LIMA1-212ENST00000552491 CARD14Q9BXL6 1004 aa7.04□□□□□ -1.28
LIMA1-212ENST00000552491 CEP152O94986 1710 aa7.03□□□□□ -1.28
LIMA1-212ENST00000552491 CHD1O14646 1710 aa7.03□□□□□ -1.28
LIMA1-212ENST00000552491 SCAPERQ9BY12 1400 aa7.03□□□□□ -1.28
LIMA1-212ENST00000552491 NPC1L1Q9UHC9 1359 aa7.03□□□□□ -1.28
LIMA1-212ENST00000552491 VIRMAQ69YN4 1812 aaKnown RBP7.03□□□□□ -1.28
LIMA1-212ENST00000552491 KIF12Q96FN5 646 aa7.03□□□□□ -1.28
LIMA1-212ENST00000552491 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.03□□□□□ -1.28
LIMA1-212ENST00000552491 TRPM2O94759 1503 aa7.03□□□□□ -1.28
LIMA1-212ENST00000552491 PANK1Q8TE04 598 aa7.02□□□□□ -1.29
LIMA1-212ENST00000552491 COLQQ9Y215 455 aaPredicted RBP7.02□□□□□ -1.29
LIMA1-212ENST00000552491 PTPRTO14522 1441 aa7.02□□□□□ -1.29
LIMA1-212ENST00000552491 PLCH2O75038 1416 aa7.02□□□□□ -1.29
LIMA1-212ENST00000552491 ABCC1P33527 1531 aa7.02□□□□□ -1.29
LIMA1-212ENST00000552491 ERVK-7P63135 1459 aa7.02□□□□□ -1.29
LIMA1-212ENST00000552491 PRKCSHP14314 528 aaPredicted RBP7.02□□□□□ -1.29
LIMA1-212ENST00000552491 AFAP1Q8N556 730 aa7.02□□□□□ -1.29
LIMA1-212ENST00000552491 DAXXQ9UER7 740 aaPredicted RBP7.02□□□□□ -1.29
LIMA1-212ENST00000552491 KDM5AP29375 1690 aaKnown RBP7.01□□□□□ -1.29
LIMA1-212ENST00000552491 E9PSI1 815 aa7.01□□□□□ -1.29
LIMA1-212ENST00000552491 CDCA8Q53HL2 280 aa7.01□□□□□ -1.29
LIMA1-212ENST00000552491 CFAP70Q5T0N1 1121 aa7.01□□□□□ -1.29
LIMA1-212ENST00000552491 TNNQ9UQP3 1299 aa7.01□□□□□ -1.29
LIMA1-212ENST00000552491 COG6Q9Y2V7 657 aa7.01□□□□□ -1.29
LIMA1-212ENST00000552491 UGGT1Q9NYU2 1555 aa7.01□□□□□ -1.29
LIMA1-212ENST00000552491 SHROOM2Q13796 1616 aa7□□□□□ -1.29
LIMA1-212ENST00000552491 NLRP1Q9C000 1473 aa7□□□□□ -1.29
LIMA1-212ENST00000552491 WWC1Q8IX03 1113 aa7□□□□□ -1.29
LIMA1-212ENST00000552491 STAC3Q96MF2 364 aa7□□□□□ -1.29
LIMA1-212ENST00000552491 EFCAB2Q5VUJ9 269 aa7□□□□□ -1.29
LIMA1-212ENST00000552491 ADGRF5Q8IZF2 1346 aa6.99□□□□□ -1.29
LIMA1-212ENST00000552491 CLUAP1Q96AJ1 413 aa6.99□□□□□ -1.29
LIMA1-212ENST00000552491 RRP7AQ9Y3A4 280 aaKnown RBP6.99□□□□□ -1.29
LIMA1-212ENST00000552491 SPAG9O60271 1321 aaKnown RBP6.99□□□□□ -1.29
LIMA1-212ENST00000552491 ABCA6Q8N139 1617 aa6.99□□□□□ -1.29
LIMA1-212ENST00000552491 MAP3K13O43283 966 aa6.99□□□□□ -1.29
LIMA1-212ENST00000552491 RLBP1P12271 317 aa6.99□□□□□ -1.29
LIMA1-212ENST00000552491 PDE3AQ14432 1141 aa6.99□□□□□ -1.29
LIMA1-212ENST00000552491 PCDHB15Q9Y5E8 787 aa6.99□□□□□ -1.29
LIMA1-212ENST00000552491 KIAA1210Q9ULL0 1709 aa6.99□□□□□ -1.29
LIMA1-212ENST00000552491 DEPDC5O75140 1603 aa6.99□□□□□ -1.29
LIMA1-212ENST00000552491 ZCCHC11Q5TAX3 1644 aaKnown RBP6.99□□□□□ -1.29
LIMA1-212ENST00000552491 ZFYVE16Q7Z3T8 1539 aa6.99□□□□□ -1.29
LIMA1-212ENST00000552491 CENPJQ9HC77 1338 aaPredicted RBP6.99□□□□□ -1.29
LIMA1-212ENST00000552491 SHPRHQ149N8 1683 aa6.98□□□□□ -1.29
LIMA1-212ENST00000552491 NEUROD2Q15784 382 aa6.98□□□□□ -1.29
LIMA1-212ENST00000552491 POGKQ9P215 609 aa6.98□□□□□ -1.29
LIMA1-212ENST00000552491 CGNL1Q0VF96 1302 aa6.98□□□□□ -1.29
LIMA1-212ENST00000552491 TET3O43151 1660 aa6.98□□□□□ -1.29
LIMA1-212ENST00000552491 MAP3K4Q9Y6R4 1608 aa6.97□□□□□ -1.29
LIMA1-212ENST00000552491 POLR3AO14802 1390 aaPredicted RBP6.97□□□□□ -1.29
LIMA1-212ENST00000552491 TNNT2P45379 298 aaPredicted RBP6.97□□□□□ -1.29
LIMA1-212ENST00000552491 NGEFQ8N5V2 710 aa6.97□□□□□ -1.29
LIMA1-212ENST00000552491 BCL2L13Q9BXK5 485 aa6.97□□□□□ -1.29
LIMA1-212ENST00000552491 SLKQ9H2G2 1235 aaPredicted RBP6.97□□□□□ -1.29
LIMA1-212ENST00000552491 RARSP54136 660 aaKnown RBP6.97□□□□□ -1.29
LIMA1-212ENST00000552491 VWDEQ8N2E2 1590 aa6.97□□□□□ -1.29
LIMA1-212ENST00000552491 SLC24A1O60721 1099 aa6.96□□□□□ -1.29
LIMA1-212ENST00000552491 RTEL1-TNFRSF6BF6WH68 1400 aa6.96□□□□□ -1.3
LIMA1-212ENST00000552491 CANXP27824 592 aaKnown RBP6.96□□□□□ -1.3
LIMA1-212ENST00000552491 ANTXR1Q9H6X2 564 aa6.96□□□□□ -1.3
LIMA1-212ENST00000552491 MROH2AA6NES4 1674 aa6.96□□□□□ -1.3
LIMA1-212ENST00000552491 MAPK8IP3Q9UPT6 1336 aa6.96□□□□□ -1.3
LIMA1-212ENST00000552491 MROH1Q8NDA8 1641 aa6.96□□□□□ -1.3
LIMA1-212ENST00000552491 NSD3Q9BZ95 1437 aa6.96□□□□□ -1.3
LIMA1-212ENST00000552491 IQSEC2Q5JU85 1478 aa6.95□□□□□ -1.3
LIMA1-212ENST00000552491 KIF3BO15066 747 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 108.4 ms