RNA–Protein interactions for RNA: ENST00000551269.1

PRPF40B-213, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 3

Gene PRPF40B, Length 923 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-213ENST00000551269 TMEM94Q12767 1356 aa16.51■□□□□ 0.23
PRPF40B-213ENST00000551269 NCOA3Q9Y6Q9 1424 aa16.51■□□□□ 0.23
PRPF40B-213ENST00000551269 PLEKHH1Q9ULM0 1364 aa16.51■□□□□ 0.23
PRPF40B-213ENST00000551269 IQSEC2Q5JU85 1478 aa16.5■□□□□ 0.23
PRPF40B-213ENST00000551269 EIF4G2P78344 907 aaKnown RBP eCLIP16.5■□□□□ 0.23
PRPF40B-213ENST00000551269 SAFB2Q14151 953 aaKnown RBP eCLIP16.5■□□□□ 0.23
PRPF40B-213ENST00000551269 MSH6P52701 1360 aa16.5■□□□□ 0.23
PRPF40B-213ENST00000551269 SIRT1Q96EB6 747 aa16.49■□□□□ 0.23
PRPF40B-213ENST00000551269 DCCP43146 1447 aa16.48■□□□□ 0.23
PRPF40B-213ENST00000551269 WAPLQ7Z5K2 1190 aa16.48■□□□□ 0.23
PRPF40B-213ENST00000551269 TOPAZ1Q8N9V7 1692 aa16.48■□□□□ 0.23
PRPF40B-213ENST00000551269 TULP4Q9NRJ4 1543 aa16.48■□□□□ 0.23
PRPF40B-213ENST00000551269 SBNO2Q9Y2G9 1366 aa16.48■□□□□ 0.23
PRPF40B-213ENST00000551269 MINK1Q8N4C8 1332 aaPredicted RBP16.45■□□□□ 0.22
PRPF40B-213ENST00000551269 RBM33Q96EV2 1170 aaKnown RBP16.45■□□□□ 0.22
PRPF40B-213ENST00000551269 KIF1AQ12756 1690 aa16.45■□□□□ 0.22
PRPF40B-213ENST00000551269 USP32Q8NFA0 1604 aa16.45■□□□□ 0.22
PRPF40B-213ENST00000551269 ST20-MTHFSA0A0A6YYL1 179 aa16.44■□□□□ 0.22
PRPF40B-213ENST00000551269 HSPA5P11021 654 aaKnown RBP16.44■□□□□ 0.22
PRPF40B-213ENST00000551269 MYOM1P52179 1685 aa16.43■□□□□ 0.22
PRPF40B-213ENST00000551269 HIRIP3Q9BW71 556 aaPredicted RBP16.42■□□□□ 0.22
PRPF40B-213ENST00000551269 SLC24A1O60721 1099 aa16.41■□□□□ 0.22
PRPF40B-213ENST00000551269 EVC2Q86UK5 1308 aa16.41■□□□□ 0.22
PRPF40B-213ENST00000551269 ATF3P18847 181 aa16.4■□□□□ 0.22
PRPF40B-213ENST00000551269 AKAP12Q02952 1782 aa16.4■□□□□ 0.22
PRPF40B-213ENST00000551269 ANKARQ7Z5J8 1434 aa16.39■□□□□ 0.21
PRPF40B-213ENST00000551269 TMF1P82094 1093 aa16.39■□□□□ 0.21
PRPF40B-213ENST00000551269 C19orf44Q9H6X5 657 aa16.39■□□□□ 0.21
PRPF40B-213ENST00000551269 ATP7BP35670 1465 aa16.39■□□□□ 0.21
PRPF40B-213ENST00000551269 ROBO1Q9Y6N7 1651 aa16.39■□□□□ 0.21
PRPF40B-213ENST00000551269 CADPS2Q86UW7 1296 aa16.38■□□□□ 0.21
PRPF40B-213ENST00000551269 SRPK2P78362 688 aaKnown RBP16.37■□□□□ 0.21
PRPF40B-213ENST00000551269 CERKQ8TCT0 537 aa16.37■□□□□ 0.21
PRPF40B-213ENST00000551269 DISP3Q9P2K9 1392 aa16.37■□□□□ 0.21
PRPF40B-213ENST00000551269 MST1RQ04912 1400 aa16.36■□□□□ 0.21
PRPF40B-213ENST00000551269 WASLO00401 505 aaPredicted RBP16.36■□□□□ 0.21
PRPF40B-213ENST00000551269 TESK2Q96S53 571 aa16.36■□□□□ 0.21
PRPF40B-213ENST00000551269 ATAD2Q6PL18 1390 aa16.36■□□□□ 0.21
PRPF40B-213ENST00000551269 MON2Q7Z3U7 1717 aa16.36■□□□□ 0.21
PRPF40B-213ENST00000551269 NHSL1Q5SYE7 1610 aa16.35■□□□□ 0.21
PRPF40B-213ENST00000551269 CDCA8Q53HL2 280 aa16.35■□□□□ 0.21
PRPF40B-213ENST00000551269 CDK19Q9BWU1 502 aa16.34■□□□□ 0.21
PRPF40B-213ENST00000551269 C1orf167Q5SNV9 1468 aa16.34■□□□□ 0.21
PRPF40B-213ENST00000551269 NUTM2FA1L443 756 aa16.33■□□□□ 0.2
PRPF40B-213ENST00000551269 PHLPP1O60346 1717 aa16.33■□□□□ 0.2
PRPF40B-213ENST00000551269 POLR3GLQ9BT43 218 aa16.32■□□□□ 0.2
PRPF40B-213ENST00000551269 PPIP5K1Q6PFW1 1433 aa16.31■□□□□ 0.2
PRPF40B-213ENST00000551269 TOM1O60784 492 aa16.31■□□□□ 0.2
PRPF40B-213ENST00000551269 CABP2Q9NPB3 220 aa16.31■□□□□ 0.2
PRPF40B-213ENST00000551269 KIF20BQ96Q89 1820 aa16.31■□□□□ 0.2
PRPF40B-213ENST00000551269 NINLQ9Y2I6 1382 aa16.3■□□□□ 0.2
PRPF40B-213ENST00000551269 NRKQ7Z2Y5 1582 aa16.3■□□□□ 0.2
PRPF40B-213ENST00000551269 UBAP1LF5GYI3 381 aa16.29■□□□□ 0.2
PRPF40B-213ENST00000551269 SCAF1Q9H7N4 1312 aaKnown RBP16.28■□□□□ 0.2
PRPF40B-213ENST00000551269 NUDT16Q96DE0 195 aaKnown RBP16.28■□□□□ 0.2
PRPF40B-213ENST00000551269 AHDC1Q5TGY3 1603 aaPredicted RBP16.27■□□□□ 0.2
PRPF40B-213ENST00000551269 PRR36Q9H6K5 1346 aa16.27■□□□□ 0.2
PRPF40B-213ENST00000551269 PUS7Q96PZ0 661 aaKnown RBP16.27■□□□□ 0.2
PRPF40B-213ENST00000551269 TRPM3Q9HCF6 1732 aaPredicted RBP16.27■□□□□ 0.19
PRPF40B-213ENST00000551269 CCDC7Q96M83 1385 aa16.26■□□□□ 0.19
PRPF40B-213ENST00000551269 KIF7Q2M1P5 1343 aa16.26■□□□□ 0.19
PRPF40B-213ENST00000551269 ESCO1Q5FWF5 840 aa16.26■□□□□ 0.19
PRPF40B-213ENST00000551269 SLAIN2Q9P270 581 aa16.26■□□□□ 0.19
PRPF40B-213ENST00000551269 TMC1Q8TDI8 760 aa16.25■□□□□ 0.19
PRPF40B-213ENST00000551269 CCDC61Q9Y6R9 512 aa16.25■□□□□ 0.19
PRPF40B-213ENST00000551269 ANKRD26Q9UPS8 1709 aa16.25■□□□□ 0.19
PRPF40B-213ENST00000551269 PIP4K2BP78356 416 aa16.24■□□□□ 0.19
PRPF40B-213ENST00000551269 PHF8Q9UPP1 1060 aa16.23■□□□□ 0.19
PRPF40B-213ENST00000551269 WASHC2AQ641Q2 1341 aa16.22■□□□□ 0.19
PRPF40B-213ENST00000551269 ALS2Q96Q42 1657 aa16.22■□□□□ 0.19
PRPF40B-213ENST00000551269 BRINP3Q76B58 766 aa16.22■□□□□ 0.19
PRPF40B-213ENST00000551269 PMFBP1Q8TBY8 1022 aa16.22■□□□□ 0.19
PRPF40B-213ENST00000551269 ORAI2Q96SN7 254 aa16.22■□□□□ 0.19
PRPF40B-213ENST00000551269 COL16A1Q07092 1604 aaPredicted RBP16.22■□□□□ 0.19
PRPF40B-213ENST00000551269 ZNF316A6NFI3 1004 aaPredicted RBP16.21■□□□□ 0.19
PRPF40B-213ENST00000551269 NGDNQ8NEJ9 315 aaKnown RBP16.21■□□□□ 0.19
PRPF40B-213ENST00000551269 POLR3AO14802 1390 aaPredicted RBP16.21■□□□□ 0.19
PRPF40B-213ENST00000551269 ANKRD36BQ8N2N9 1353 aa16.21■□□□□ 0.19
PRPF40B-213ENST00000551269 NPHP3Q7Z494 1330 aa16.2■□□□□ 0.18
PRPF40B-213ENST00000551269 C11orf95C9JLR9 678 aaPredicted RBP16.2■□□□□ 0.18
PRPF40B-213ENST00000551269 HDGFL2Q7Z4V5 671 aaPredicted RBP16.2■□□□□ 0.18
PRPF40B-213ENST00000551269 CABP1Q9NZU7 370 aa16.2■□□□□ 0.18
PRPF40B-213ENST00000551269 A0A1W2PP64 1363 aa16.2■□□□□ 0.18
PRPF40B-213ENST00000551269 CD163L1Q9NR16 1453 aa16.2■□□□□ 0.18
PRPF40B-213ENST00000551269 ABCA3Q99758 1704 aa16.19■□□□□ 0.18
PRPF40B-213ENST00000551269 PIK3C2AO00443 1686 aa16.19■□□□□ 0.18
PRPF40B-213ENST00000551269 PXDNQ92626 1479 aa16.19■□□□□ 0.18
PRPF40B-213ENST00000551269 TERF2IPQ9NYB0 399 aa16.19■□□□□ 0.18
PRPF40B-213ENST00000551269 USP6P35125 1406 aa16.19■□□□□ 0.18
PRPF40B-213ENST00000551269 ACEP12821 1306 aa16.19■□□□□ 0.18
PRPF40B-213ENST00000551269 SHPRHQ149N8 1683 aa16.18■□□□□ 0.18
PRPF40B-213ENST00000551269 USP54Q70EL1 1684 aa16.18■□□□□ 0.18
PRPF40B-213ENST00000551269 KTN1Q86UP2 1357 aaKnown RBP16.18■□□□□ 0.18
PRPF40B-213ENST00000551269 CPSF1Q10570 1443 aaKnown RBP16.18■□□□□ 0.18
PRPF40B-213ENST00000551269 PLEKHG3A1L390 1219 aa16.17■□□□□ 0.18
PRPF40B-213ENST00000551269 EDC4Q6P2E9 1401 aaKnown RBP16.17■□□□□ 0.18
PRPF40B-213ENST00000551269 PHRF1Q9P1Y6 1649 aaKnown RBP16.16■□□□□ 0.18
PRPF40B-213ENST00000551269 SLC12A5Q9H2X9 1139 aa16.16■□□□□ 0.18
PRPF40B-213ENST00000551269 MARF1Q9Y4F3 1742 aaKnown RBP16.16■□□□□ 0.18
PRPF40B-213ENST00000551269 CRYBG1Q9Y4K1 1723 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms