RNA–Protein interactions for RNA: ENST00000550285.5

PDE1B-206, Transcript of phosphodiesterase 1B, human

TSL 2

Gene PDE1B, Length 2,209 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDE1B-206	ENST00000550285	TMC1	Q8TDI8	760 aa		19.91	■□□□□ 0.78
PDE1B-206	ENST00000550285	CC2D1B	Q5T0F9	858 aa	Known RBP	19.9	■□□□□ 0.78
PDE1B-206	ENST00000550285	ANKLE2	Q86XL3	938 aa		19.9	■□□□□ 0.78
PDE1B-206	ENST00000550285	TBX22	Q9Y458	520 aa		19.9	■□□□□ 0.78
PDE1B-206	ENST00000550285	ROBO2	Q9HCK4	1378 aa		19.89	■□□□□ 0.78
PDE1B-206	ENST00000550285	KNDC1	Q76NI1	1749 aa		19.89	■□□□□ 0.77
PDE1B-206	ENST00000550285	SRPK2	P78362	688 aa	Known RBP	19.88	■□□□□ 0.77
PDE1B-206	ENST00000550285	CARD14	Q9BXL6	1004 aa		19.88	■□□□□ 0.77
PDE1B-206	ENST00000550285	TECPR2	O15040	1411 aa		19.88	■□□□□ 0.77
PDE1B-206	ENST00000550285	CDK19	Q9BWU1	502 aa		19.87	■□□□□ 0.77
PDE1B-206	ENST00000550285	CPS1	P31327	1500 aa		19.86	■□□□□ 0.77
PDE1B-206	ENST00000550285	AMOTL2	Q9Y2J4	779 aa		19.86	■□□□□ 0.77
PDE1B-206	ENST00000550285	KNSTRN	Q9Y448	316 aa		19.86	■□□□□ 0.77
PDE1B-206	ENST00000550285	KTN1	Q86UP2	1357 aa	Known RBP	19.85	■□□□□ 0.77
PDE1B-206	ENST00000550285	MRS2	Q9HD23	443 aa		19.84	■□□□□ 0.77
PDE1B-206	ENST00000550285	FAM135B	Q49AJ0	1406 aa		19.84	■□□□□ 0.77
PDE1B-206	ENST00000550285	AMER1	Q5JTC6	1135 aa	Predicted RBP	19.84	■□□□□ 0.77
PDE1B-206	ENST00000550285	SIRT1	Q96EB6	747 aa		19.84	■□□□□ 0.77
PDE1B-206	ENST00000550285	NCKAP5L	Q9HCH0	1330 aa		19.83	■□□□□ 0.77
PDE1B-206	ENST00000550285	PUS7	Q96PZ0	661 aa	Known RBP	19.83	■□□□□ 0.77
PDE1B-206	ENST00000550285	PARD3	Q8TEW0	1356 aa		19.83	■□□□□ 0.77
PDE1B-206	ENST00000550285	DIP2A	Q14689	1571 aa		19.82	■□□□□ 0.76
PDE1B-206	ENST00000550285	RALBP1	Q15311	655 aa		19.82	■□□□□ 0.76
PDE1B-206	ENST00000550285	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	19.81	■□□□□ 0.76
PDE1B-206	ENST00000550285	WASL	O00401	505 aa	Predicted RBP	19.79	■□□□□ 0.76
PDE1B-206	ENST00000550285	KCNA6	P17658	529 aa		19.79	■□□□□ 0.76
PDE1B-206	ENST00000550285	MYBBP1A	Q9BQG0	1328 aa	Known RBP	19.78	■□□□□ 0.76
PDE1B-206	ENST00000550285	NSD3	Q9BZ95	1437 aa		19.78	■□□□□ 0.76
PDE1B-206	ENST00000550285	NPHP4	O75161	1426 aa	Predicted RBP	19.78	■□□□□ 0.76
PDE1B-206	ENST00000550285	HSPA2	P54652	639 aa		19.78	■□□□□ 0.76
PDE1B-206	ENST00000550285	CABP1	Q9NZU7	370 aa		19.78	■□□□□ 0.76
PDE1B-206	ENST00000550285	ATAD2	Q6PL18	1390 aa		19.77	■□□□□ 0.76
PDE1B-206	ENST00000550285	XRN1	Q8IZH2	1706 aa	Known RBP	19.77	■□□□□ 0.76
PDE1B-206	ENST00000550285	FAM9B	Q8IZU0	186 aa		19.77	■□□□□ 0.76
PDE1B-206	ENST00000550285		A0A1W2PP64	1363 aa		19.75	■□□□□ 0.75
PDE1B-206	ENST00000550285	ANKRD36B	Q8N2N9	1353 aa		19.75	■□□□□ 0.75
PDE1B-206	ENST00000550285	CD163L1	Q9NR16	1453 aa		19.75	■□□□□ 0.75
PDE1B-206	ENST00000550285	NUTM2F	A1L443	756 aa		19.74	■□□□□ 0.75
PDE1B-206	ENST00000550285	RBM33	Q96EV2	1170 aa	Known RBP	19.74	■□□□□ 0.75
PDE1B-206	ENST00000550285	CHD2	O14647	1828 aa	Known RBP	19.74	■□□□□ 0.75
PDE1B-206	ENST00000550285	PTCH1	Q13635	1447 aa		19.74	■□□□□ 0.75
PDE1B-206	ENST00000550285	CENPB	P07199	599 aa	Predicted RBP	19.74	■□□□□ 0.75
PDE1B-206	ENST00000550285	PRR36	Q9H6K5	1346 aa		19.73	■□□□□ 0.75
PDE1B-206	ENST00000550285	PIK3R4	Q99570	1358 aa		19.73	■□□□□ 0.75
PDE1B-206	ENST00000550285	NUDT16	Q96DE0	195 aa	Known RBP	19.72	■□□□□ 0.75
PDE1B-206	ENST00000550285	NPC1L1	Q9UHC9	1359 aa		19.72	■□□□□ 0.75
PDE1B-206	ENST00000550285	NLRP13	Q86W25	1043 aa		19.71	■□□□□ 0.75
PDE1B-206	ENST00000550285	NINL	Q9Y2I6	1382 aa		19.71	■□□□□ 0.75
PDE1B-206	ENST00000550285	ADGRB2	O60241	1585 aa		19.7	■□□□□ 0.74
PDE1B-206	ENST00000550285	PPP2R1A	P30153	589 aa		19.7	■□□□□ 0.74
PDE1B-206	ENST00000550285	BRD4	O60885	1362 aa	Predicted RBP	19.7	■□□□□ 0.74
PDE1B-206	ENST00000550285	PNISR	Q8TF01	805 aa	Known RBP	19.69	■□□□□ 0.74
PDE1B-206	ENST00000550285	PPIP5K1	Q6PFW1	1433 aa		19.69	■□□□□ 0.74
PDE1B-206	ENST00000550285	TERF2IP	Q9NYB0	399 aa		19.68	■□□□□ 0.74
PDE1B-206	ENST00000550285	ATP7B	P35670	1465 aa		19.68	■□□□□ 0.74
PDE1B-206	ENST00000550285	LMTK3	Q96Q04	1460 aa		19.67	■□□□□ 0.74
PDE1B-206	ENST00000550285	CCDC61	Q9Y6R9	512 aa		19.67	■□□□□ 0.74
PDE1B-206	ENST00000550285	CGNL1	Q0VF96	1302 aa		19.66	■□□□□ 0.74
PDE1B-206	ENST00000550285	USP32	Q8NFA0	1604 aa		19.66	■□□□□ 0.74
PDE1B-206	ENST00000550285	TNNT2	P45379	298 aa	Predicted RBP	19.66	■□□□□ 0.74
PDE1B-206	ENST00000550285	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	19.66	■□□□□ 0.74
PDE1B-206	ENST00000550285	HNRNPU	Q00839	825 aa	Known RBP eCLIP	19.65	■□□□□ 0.74
PDE1B-206	ENST00000550285	SENP3-EIF4A1	A0A087X0R7	540 aa		19.64	■□□□□ 0.73
PDE1B-206	ENST00000550285	MORC1	Q86VD1	984 aa		19.64	■□□□□ 0.73
PDE1B-206	ENST00000550285	GGNBP2	Q9H3C7	697 aa		19.63	■□□□□ 0.73
PDE1B-206	ENST00000550285	SCAF1	Q9H7N4	1312 aa	Known RBP	19.63	■□□□□ 0.73
PDE1B-206	ENST00000550285	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	19.63	■□□□□ 0.73
PDE1B-206	ENST00000550285	RGPD8	O14715	1765 aa	Predicted RBP	19.63	■□□□□ 0.73
PDE1B-206	ENST00000550285	CPSF1	Q10570	1443 aa	Known RBP	19.62	■□□□□ 0.73
PDE1B-206	ENST00000550285	FYB1	O15117	783 aa		19.62	■□□□□ 0.73
PDE1B-206	ENST00000550285	NALCN	Q8IZF0	1738 aa		19.61	■□□□□ 0.73
PDE1B-206	ENST00000550285	TOPAZ1	Q8N9V7	1692 aa		19.6	■□□□□ 0.73
PDE1B-206	ENST00000550285	CDC42BPG	Q6DT37	1551 aa		19.6	■□□□□ 0.73
PDE1B-206	ENST00000550285	NKTR	P30414	1462 aa	Known RBP	19.6	■□□□□ 0.73
PDE1B-206	ENST00000550285	PMFBP1	Q8TBY8	1022 aa		19.59	■□□□□ 0.73
PDE1B-206	ENST00000550285	STRC	Q7RTU9	1775 aa		19.58	■□□□□ 0.73
PDE1B-206	ENST00000550285	ACE	P12821	1306 aa		19.58	■□□□□ 0.73
PDE1B-206	ENST00000550285	NWD1	Q149M9	1564 aa		19.58	■□□□□ 0.72
PDE1B-206	ENST00000550285	AKAP12	Q02952	1782 aa		19.57	■□□□□ 0.72
PDE1B-206	ENST00000550285	STRCP1	A6NGW2	1772 aa		19.57	■□□□□ 0.72
PDE1B-206	ENST00000550285	ITSN1	Q15811	1721 aa		19.56	■□□□□ 0.72
PDE1B-206	ENST00000550285	PLEKHG3	A1L390	1219 aa		19.56	■□□□□ 0.72
PDE1B-206	ENST00000550285	ZRANB1	Q9UGI0	708 aa		19.56	■□□□□ 0.72
PDE1B-206	ENST00000550285	MON2	Q7Z3U7	1717 aa		19.56	■□□□□ 0.72
PDE1B-206	ENST00000550285	NSD2	O96028	1365 aa		19.56	■□□□□ 0.72
PDE1B-206	ENST00000550285	FMN2	Q9NZ56	1722 aa		19.56	■□□□□ 0.72
PDE1B-206	ENST00000550285	PROSER2	Q86WR7	435 aa	Predicted RBP	19.55	■□□□□ 0.72
PDE1B-206	ENST00000550285	NME9	Q86XW9	330 aa		19.55	■□□□□ 0.72
PDE1B-206	ENST00000550285	KIF20B	Q96Q89	1820 aa		19.55	■□□□□ 0.72
PDE1B-206	ENST00000550285	C14orf37	Q86TY3	774 aa		19.55	■□□□□ 0.72
PDE1B-206	ENST00000550285	EDC4	Q6P2E9	1401 aa	Known RBP	19.54	■□□□□ 0.72
PDE1B-206	ENST00000550285	FBLN1	P23142	703 aa		19.53	■□□□□ 0.72
PDE1B-206	ENST00000550285	ADGRL3	Q9HAR2	1447 aa		19.53	■□□□□ 0.72
PDE1B-206	ENST00000550285	ANKRD26	Q9UPS8	1709 aa		19.53	■□□□□ 0.72
PDE1B-206	ENST00000550285	MTHFS	P49914	203 aa		19.52	■□□□□ 0.72
PDE1B-206	ENST00000550285	ZNF692	Q9BU19	519 aa	Predicted RBP	19.52	■□□□□ 0.72
PDE1B-206	ENST00000550285	ADAMTS8	Q9UP79	889 aa		19.52	■□□□□ 0.71
PDE1B-206	ENST00000550285	ANKAR	Q7Z5J8	1434 aa		19.5	■□□□□ 0.71
PDE1B-206	ENST00000550285	NGDN	Q8NEJ9	315 aa	Known RBP	19.49	■□□□□ 0.71
PDE1B-206	ENST00000550285	USP6	P35125	1406 aa		19.49	■□□□□ 0.71

Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms