RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 WAPLQ7Z5K2 1190 aa15.95■□□□□ 0.14
VTI1BP3-201ENST00000550220 NPHP3Q7Z494 1330 aa15.94■□□□□ 0.14
VTI1BP3-201ENST00000550220 SETD1AO15047 1707 aaKnown RBP15.94■□□□□ 0.14
VTI1BP3-201ENST00000550220 DDX17Q92841 729 aaKnown RBP15.94■□□□□ 0.14
VTI1BP3-201ENST00000550220 YTHDC2Q9H6S0 1430 aaKnown RBP15.94■□□□□ 0.14
VTI1BP3-201ENST00000550220 SHPRHQ149N8 1683 aa15.93■□□□□ 0.14
VTI1BP3-201ENST00000550220 PNPLA6Q8IY17 1366 aa15.93■□□□□ 0.14
VTI1BP3-201ENST00000550220 LRP6O75581 1613 aa15.93■□□□□ 0.14
VTI1BP3-201ENST00000550220 MYOM2P54296 1465 aa15.92■□□□□ 0.14
VTI1BP3-201ENST00000550220 NALCNQ8IZF0 1738 aa15.92■□□□□ 0.14
VTI1BP3-201ENST00000550220 RXRBP28702 533 aa15.92■□□□□ 0.14
VTI1BP3-201ENST00000550220 CFAP70Q5T0N1 1121 aa15.92■□□□□ 0.14
VTI1BP3-201ENST00000550220 NRXN1Q9ULB1 1477 aa15.91■□□□□ 0.14
VTI1BP3-201ENST00000550220 NHSL1Q5SYE7 1610 aa15.9■□□□□ 0.14
VTI1BP3-201ENST00000550220 CDC42BPGQ6DT37 1551 aa15.89■□□□□ 0.13
VTI1BP3-201ENST00000550220 FOXO3O43524 673 aa15.89■□□□□ 0.13
VTI1BP3-201ENST00000550220 DCAF11Q8TEB1 546 aa15.89■□□□□ 0.13
VTI1BP3-201ENST00000550220 NGLY1Q96IV0 654 aa15.89■□□□□ 0.13
VTI1BP3-201ENST00000550220 C8orf37Q96NL8 207 aa15.89■□□□□ 0.13
VTI1BP3-201ENST00000550220 AFF2P51816 1311 aa15.89■□□□□ 0.13
VTI1BP3-201ENST00000550220 POGKQ9P215 609 aa15.88■□□□□ 0.13
VTI1BP3-201ENST00000550220 PLEKHH1Q9ULM0 1364 aa15.87■□□□□ 0.13
VTI1BP3-201ENST00000550220 LAMC1P11047 1609 aa15.86■□□□□ 0.13
VTI1BP3-201ENST00000550220 IFT172Q9UG01 1749 aa15.86■□□□□ 0.13
VTI1BP3-201ENST00000550220 ADAMTS2O95450 1211 aa15.86■□□□□ 0.13
VTI1BP3-201ENST00000550220 PRAM1Q96QH2 718 aa15.86■□□□□ 0.13
VTI1BP3-201ENST00000550220 QTRT2Q9H974 415 aaKnown RBP15.86■□□□□ 0.13
VTI1BP3-201ENST00000550220 KDM2AQ9Y2K7 1162 aa15.86■□□□□ 0.13
VTI1BP3-201ENST00000550220 NUTM2FA1L443 756 aa15.85■□□□□ 0.13
VTI1BP3-201ENST00000550220 RBM6P78332 1123 aaKnown RBP15.85■□□□□ 0.13
VTI1BP3-201ENST00000550220 PSME1Q06323 249 aa15.85■□□□□ 0.13
VTI1BP3-201ENST00000550220 FNBP4Q8N3X1 1017 aaPredicted RBP15.83■□□□□ 0.12
VTI1BP3-201ENST00000550220 PHF8Q9UPP1 1060 aa15.83■□□□□ 0.12
VTI1BP3-201ENST00000550220 CDK12Q9NYV4 1490 aaPredicted RBP15.83■□□□□ 0.12
VTI1BP3-201ENST00000550220 KNDC1Q76NI1 1749 aa15.82■□□□□ 0.12
VTI1BP3-201ENST00000550220 KRT28Q7Z3Y7 464 aa15.82■□□□□ 0.12
VTI1BP3-201ENST00000550220 USP21Q9UK80 565 aa15.82■□□□□ 0.12
VTI1BP3-201ENST00000550220 TRPC5Q9UL62 973 aaPredicted RBP15.82■□□□□ 0.12
VTI1BP3-201ENST00000550220 DLC1Q96QB1 1528 aa15.82■□□□□ 0.12
VTI1BP3-201ENST00000550220 XPCQ01831 940 aaPredicted RBP15.81■□□□□ 0.12
VTI1BP3-201ENST00000550220 SAFB2Q14151 953 aaKnown RBP eCLIP15.81■□□□□ 0.12
VTI1BP3-201ENST00000550220 EIF3AQ14152 1382 aaKnown RBP15.81■□□□□ 0.12
VTI1BP3-201ENST00000550220 TRAK1Q9UPV9 953 aa15.81■□□□□ 0.12
VTI1BP3-201ENST00000550220 SPATA31A3Q5VYP0 1347 aa15.8■□□□□ 0.12
VTI1BP3-201ENST00000550220 PXDNQ92626 1479 aa15.79■□□□□ 0.12
VTI1BP3-201ENST00000550220 ANKARQ7Z5J8 1434 aa15.78■□□□□ 0.12
VTI1BP3-201ENST00000550220 SBNO1A3KN83 1393 aa15.76■□□□□ 0.11
VTI1BP3-201ENST00000550220 ADGRB1O14514 1584 aa15.76■□□□□ 0.11
VTI1BP3-201ENST00000550220 WASLO00401 505 aaPredicted RBP15.76■□□□□ 0.11
VTI1BP3-201ENST00000550220 UPF1Q92900 1129 aaKnown RBP eCLIP15.76■□□□□ 0.11
VTI1BP3-201ENST00000550220 HAP1P54257 671 aaPredicted RBP15.75■□□□□ 0.11
VTI1BP3-201ENST00000550220 COL22A1Q8NFW1 1626 aaPredicted RBP15.75■□□□□ 0.11
VTI1BP3-201ENST00000550220 ARHGEF10O15013 1369 aa15.75■□□□□ 0.11
VTI1BP3-201ENST00000550220 FMN2Q9NZ56 1722 aa15.74■□□□□ 0.11
VTI1BP3-201ENST00000550220 MINK1Q8N4C8 1332 aaPredicted RBP15.74■□□□□ 0.11
VTI1BP3-201ENST00000550220 KIF1AQ12756 1690 aa15.74■□□□□ 0.11
VTI1BP3-201ENST00000550220 GPRASP1Q5JY77 1395 aa15.74■□□□□ 0.11
VTI1BP3-201ENST00000550220 PMFBP1Q8TBY8 1022 aa15.73■□□□□ 0.11
VTI1BP3-201ENST00000550220 HIRIP3Q9BW71 556 aaPredicted RBP15.73■□□□□ 0.11
VTI1BP3-201ENST00000550220 LMOD2Q6P5Q4 547 aa15.72■□□□□ 0.11
VTI1BP3-201ENST00000550220 TNS3Q68CZ2 1445 aa15.71■□□□□ 0.11
VTI1BP3-201ENST00000550220 UNC5CLQ8IV45 518 aa15.71■□□□□ 0.11
VTI1BP3-201ENST00000550220 ATRNO75882 1429 aa15.7■□□□□ 0.1
VTI1BP3-201ENST00000550220 NGDNQ8NEJ9 315 aaKnown RBP15.7■□□□□ 0.1
VTI1BP3-201ENST00000550220 GJD4Q96KN9 370 aaPredicted RBP15.7■□□□□ 0.1
VTI1BP3-201ENST00000550220 ADGRB2O60241 1585 aa15.7■□□□□ 0.1
VTI1BP3-201ENST00000550220 BCL9LQ86UU0 1499 aa15.69■□□□□ 0.1
VTI1BP3-201ENST00000550220 RGS12O14924 1447 aa15.68■□□□□ 0.1
VTI1BP3-201ENST00000550220 NUDT16Q96DE0 195 aaKnown RBP15.68■□□□□ 0.1
VTI1BP3-201ENST00000550220 PRR36Q9H6K5 1346 aa15.68■□□□□ 0.1
VTI1BP3-201ENST00000550220 ATAD2Q6PL18 1390 aa15.67■□□□□ 0.1
VTI1BP3-201ENST00000550220 CDK19Q9BWU1 502 aa15.67■□□□□ 0.1
VTI1BP3-201ENST00000550220 CCDC61Q9Y6R9 512 aa15.67■□□□□ 0.1
VTI1BP3-201ENST00000550220 CABLES1Q8TDN4 633 aa15.66■□□□□ 0.1
VTI1BP3-201ENST00000550220 TULP4Q9NRJ4 1543 aa15.66■□□□□ 0.1
VTI1BP3-201ENST00000550220 SLIT2O94813 1529 aa15.65■□□□□ 0.1
VTI1BP3-201ENST00000550220 CCDC125Q86Z20 511 aa15.65■□□□□ 0.1
VTI1BP3-201ENST00000550220 PAK3O75914 559 aaPredicted RBP15.64■□□□□ 0.09
VTI1BP3-201ENST00000550220 VPS72Q15906 364 aa15.64■□□□□ 0.09
VTI1BP3-201ENST00000550220 NBPF1Q3BBV0 1214 aa15.64■□□□□ 0.09
VTI1BP3-201ENST00000550220 L3MBTL2Q969R5 705 aa15.64■□□□□ 0.09
VTI1BP3-201ENST00000550220 PLEKHG3A1L390 1219 aa15.63■□□□□ 0.09
VTI1BP3-201ENST00000550220 FAM83GA6ND36 823 aa15.62■□□□□ 0.09
VTI1BP3-201ENST00000550220 CENPJQ9HC77 1338 aaPredicted RBP15.62■□□□□ 0.09
VTI1BP3-201ENST00000550220 PLEKHG5O94827 1062 aa15.61■□□□□ 0.09
VTI1BP3-201ENST00000550220 KIAA1210Q9ULL0 1709 aa15.6■□□□□ 0.09
VTI1BP3-201ENST00000550220 ONECUT3O60422 494 aaPredicted RBP15.6■□□□□ 0.09
VTI1BP3-201ENST00000550220 SRPK2P78362 688 aaKnown RBP15.6■□□□□ 0.09
VTI1BP3-201ENST00000550220 NBPF8Q3BBV2 869 aa15.6■□□□□ 0.09
VTI1BP3-201ENST00000550220 CCDC9Q9Y3X0 531 aaKnown RBP15.6■□□□□ 0.09
VTI1BP3-201ENST00000550220 USP32Q8NFA0 1604 aa15.6■□□□□ 0.09
VTI1BP3-201ENST00000550220 NEUROD1Q13562 356 aa15.59■□□□□ 0.09
VTI1BP3-201ENST00000550220 SIN3AQ96ST3 1273 aa15.59■□□□□ 0.09
VTI1BP3-201ENST00000550220 RGPD8O14715 1765 aaPredicted RBP15.59■□□□□ 0.09
VTI1BP3-201ENST00000550220 ACEP12821 1306 aa15.58■□□□□ 0.08
VTI1BP3-201ENST00000550220 POLR3AO14802 1390 aaPredicted RBP15.58■□□□□ 0.08
VTI1BP3-201ENST00000550220 ATP7BP35670 1465 aa15.58■□□□□ 0.08
VTI1BP3-201ENST00000550220 RALGAPBQ86X10 1494 aa15.58■□□□□ 0.08
VTI1BP3-201ENST00000550220 SEPT12Q8IYM1 358 aa15.57■□□□□ 0.08
VTI1BP3-201ENST00000550220 PRDM11Q9NQV5 511 aa15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms