RNA–Protein interactions for RNA: ENST00000550136.1

PTCH1-220, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 2,388 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-220ENST00000550136 MS4A1P11836 297 aa11.99□□□□□ -0.49
PTCH1-220ENST00000550136 PSEN1P49768 467 aa11.99□□□□□ -0.49
PTCH1-220ENST00000550136 PLXNC1O60486 1568 aa11.99□□□□□ -0.49
PTCH1-220ENST00000550136 POLR3GLQ9BT43 218 aa11.99□□□□□ -0.49
PTCH1-220ENST00000550136 ATXN8OSP0DMR3 200 aa11.98□□□□□ -0.49
PTCH1-220ENST00000550136 XRCC6P12956 609 aaKnown RBP eCLIP11.98□□□□□ -0.49
PTCH1-220ENST00000550136 CCDC9Q9Y3X0 531 aaKnown RBP11.98□□□□□ -0.49
PTCH1-220ENST00000550136 POGKQ9P215 609 aa11.97□□□□□ -0.49
PTCH1-220ENST00000550136 RNF17Q9BXT8 1623 aaKnown RBP11.97□□□□□ -0.49
PTCH1-220ENST00000550136 CEP162Q5TB80 1403 aa11.97□□□□□ -0.49
PTCH1-220ENST00000550136 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.97□□□□□ -0.49
PTCH1-220ENST00000550136 ATP1B4Q9UN42 357 aaPredicted RBP11.96□□□□□ -0.49
PTCH1-220ENST00000550136 FSD2A1L4K1 749 aa11.96□□□□□ -0.5
PTCH1-220ENST00000550136 PTMSP20962 102 aa11.96□□□□□ -0.5
PTCH1-220ENST00000550136 FAM13BQ9NYF5 915 aa11.96□□□□□ -0.5
PTCH1-220ENST00000550136 MED14O60244 1454 aa11.95□□□□□ -0.5
PTCH1-220ENST00000550136 A2MP01023 1474 aa11.95□□□□□ -0.5
PTCH1-220ENST00000550136 SYNMO15061 1565 aa11.95□□□□□ -0.5
PTCH1-220ENST00000550136 GOLGA6L3A6NEY3 463 aa11.95□□□□□ -0.5
PTCH1-220ENST00000550136 DEPDC5O75140 1603 aa11.95□□□□□ -0.5
PTCH1-220ENST00000550136 SPAG9O60271 1321 aaKnown RBP11.95□□□□□ -0.5
PTCH1-220ENST00000550136 ERBB4Q15303 1308 aa11.95□□□□□ -0.5
PTCH1-220ENST00000550136 ATP7AQ04656 1500 aa11.94□□□□□ -0.5
PTCH1-220ENST00000550136 APPP05067 770 aa11.94□□□□□ -0.5
PTCH1-220ENST00000550136 TMED8Q6PL24 325 aaPredicted RBP11.94□□□□□ -0.5
PTCH1-220ENST00000550136 ANKLE2Q86XL3 938 aa11.94□□□□□ -0.5
PTCH1-220ENST00000550136 TRIM44Q96DX7 344 aaPredicted RBP11.94□□□□□ -0.5
PTCH1-220ENST00000550136 CCDC94Q9BW85 323 aaPredicted RBP11.94□□□□□ -0.5
PTCH1-220ENST00000550136 LRRC7Q96NW7 1537 aa11.94□□□□□ -0.5
PTCH1-220ENST00000550136 PATL2C9JE40 543 aaKnown RBP11.93□□□□□ -0.5
PTCH1-220ENST00000550136 E9PSI1 815 aa11.93□□□□□ -0.5
PTCH1-220ENST00000550136 INO80Q9ULG1 1556 aaPredicted RBP11.93□□□□□ -0.5
PTCH1-220ENST00000550136 NPHP4O75161 1426 aaPredicted RBP11.93□□□□□ -0.5
PTCH1-220ENST00000550136 POTEAQ6S8J7 498 aa11.93□□□□□ -0.5
PTCH1-220ENST00000550136 CDC42BPAQ5VT25 1732 aa11.93□□□□□ -0.5
PTCH1-220ENST00000550136 DNAJC2Q99543 621 aaKnown RBP11.92□□□□□ -0.5
PTCH1-220ENST00000550136 TNRQ92752 1358 aa11.92□□□□□ -0.5
PTCH1-220ENST00000550136 LRRIQ1Q96JM4 1722 aa11.92□□□□□ -0.5
PTCH1-220ENST00000550136 OFD1O75665 1012 aa11.92□□□□□ -0.5
PTCH1-220ENST00000550136 SIN3AQ96ST3 1273 aa11.92□□□□□ -0.5
PTCH1-220ENST00000550136 MCCP23508 829 aa11.91□□□□□ -0.5
PTCH1-220ENST00000550136 GGT6Q6P531 493 aa11.91□□□□□ -0.5
PTCH1-220ENST00000550136 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.91□□□□□ -0.5
PTCH1-220ENST00000550136 SYCP2Q9BX26 1530 aa11.91□□□□□ -0.5
PTCH1-220ENST00000550136 RNF123Q5XPI4 1314 aa11.91□□□□□ -0.5
PTCH1-220ENST00000550136 SOX12O15370 315 aa11.91□□□□□ -0.5
PTCH1-220ENST00000550136 TPRNQ4KMQ1 711 aa11.91□□□□□ -0.5
PTCH1-220ENST00000550136 AKT1S1Q96B36 256 aa11.91□□□□□ -0.5
PTCH1-220ENST00000550136 ARID3AQ99856 593 aa11.9□□□□□ -0.5
PTCH1-220ENST00000550136 YY1AP1Q9H869 796 aa11.9□□□□□ -0.5
PTCH1-220ENST00000550136 STRCP1A6NGW2 1772 aa11.9□□□□□ -0.5
PTCH1-220ENST00000550136 IQGAP1P46940 1657 aa11.9□□□□□ -0.5
PTCH1-220ENST00000550136 ADGBQ8N7X0 1667 aa11.9□□□□□ -0.5
PTCH1-220ENST00000550136 CHRDL2Q6WN34 429 aa11.9□□□□□ -0.51
PTCH1-220ENST00000550136 THEMISQ8N1K5 641 aaPredicted RBP11.9□□□□□ -0.51
PTCH1-220ENST00000550136 PANK2Q9BZ23 570 aa11.9□□□□□ -0.51
PTCH1-220ENST00000550136 FAM135AQ9P2D6 1515 aa11.89□□□□□ -0.51
PTCH1-220ENST00000550136 KIAA1107Q9UPP5 1409 aa11.89□□□□□ -0.51
PTCH1-220ENST00000550136 PLEKHH2Q8IVE3 1493 aa11.89□□□□□ -0.51
PTCH1-220ENST00000550136 ARHGAP35Q9NRY4 1499 aa11.89□□□□□ -0.51
PTCH1-220ENST00000550136 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.89□□□□□ -0.51
PTCH1-220ENST00000550136 PHF14O94880 888 aa11.89□□□□□ -0.51
PTCH1-220ENST00000550136 PZPP20742 1482 aa11.88□□□□□ -0.51
PTCH1-220ENST00000550136 NLRP1Q9C000 1473 aa11.88□□□□□ -0.51
PTCH1-220ENST00000550136 IRX5P78411 483 aaPredicted RBP11.88□□□□□ -0.51
PTCH1-220ENST00000550136 ZBED9Q6R2W3 1325 aa11.88□□□□□ -0.51
PTCH1-220ENST00000550136 CCDC18Q5T9S5 1454 aa11.88□□□□□ -0.51
PTCH1-220ENST00000550136 CLSTN1O94985 981 aa11.87□□□□□ -0.51
PTCH1-220ENST00000550136 GEMIN8Q9NWZ8 242 aaKnown RBP11.87□□□□□ -0.51
PTCH1-220ENST00000550136 DYNC1I1O14576 645 aa11.87□□□□□ -0.51
PTCH1-220ENST00000550136 MRE11P49959 708 aa11.87□□□□□ -0.51
PTCH1-220ENST00000550136 FAM43BQ6ZT52 329 aaPredicted RBP11.87□□□□□ -0.51
PTCH1-220ENST00000550136 NGEFQ8N5V2 710 aa11.87□□□□□ -0.51
PTCH1-220ENST00000550136 SETD1AO15047 1707 aaKnown RBP11.87□□□□□ -0.51
PTCH1-220ENST00000550136 SLC4A3P48751 1232 aa11.86□□□□□ -0.51
PTCH1-220ENST00000550136 PLCD4Q9BRC7 762 aa11.86□□□□□ -0.51
PTCH1-220ENST00000550136 MYH16Q9H6N6 1097 aa11.86□□□□□ -0.51
PTCH1-220ENST00000550136 FAM135BQ49AJ0 1406 aa11.86□□□□□ -0.51
PTCH1-220ENST00000550136 HNRNPMP52272 730 aaKnown RBP eCLIP11.86□□□□□ -0.51
PTCH1-220ENST00000550136 UGGT1Q9NYU2 1555 aa11.86□□□□□ -0.51
PTCH1-220ENST00000550136 CERS3Q8IU89 383 aa11.85□□□□□ -0.51
PTCH1-220ENST00000550136 CGNQ9P2M7 1197 aaKnown RBP11.85□□□□□ -0.51
PTCH1-220ENST00000550136 RALBP1Q15311 655 aa11.85□□□□□ -0.51
PTCH1-220ENST00000550136 CC2D1BQ5T0F9 858 aaKnown RBP11.85□□□□□ -0.51
PTCH1-220ENST00000550136 FBXO31Q5XUX0 539 aaPredicted RBP11.85□□□□□ -0.51
PTCH1-220ENST00000550136 ZNF777Q9ULD5 760 aaPredicted RBP11.85□□□□□ -0.51
PTCH1-220ENST00000550136 MIA2Q96PC5 1412 aa11.85□□□□□ -0.51
PTCH1-220ENST00000550136 GPATCH8Q9UKJ3 1502 aaKnown RBP11.84□□□□□ -0.51
PTCH1-220ENST00000550136 SMG6Q86US8 1419 aaKnown RBP11.84□□□□□ -0.51
PTCH1-220ENST00000550136 TMC1Q8TDI8 760 aa11.84□□□□□ -0.51
PTCH1-220ENST00000550136 KDM5DQ9BY66 1539 aa11.84□□□□□ -0.51
PTCH1-220ENST00000550136 AEBP1Q8IUX7 1158 aa11.83□□□□□ -0.52
PTCH1-220ENST00000550136 CARD10Q9BWT7 1032 aa11.83□□□□□ -0.52
PTCH1-220ENST00000550136 ZC3H13Q5T200 1668 aaKnown RBP11.83□□□□□ -0.52
PTCH1-220ENST00000550136 ISY1Q9ULR0 285 aaKnown RBP11.82□□□□□ -0.52
PTCH1-220ENST00000550136 CASKIN1Q8WXD9 1431 aa11.82□□□□□ -0.52
PTCH1-220ENST00000550136 HMGB1P09429 215 aaKnown RBP11.82□□□□□ -0.52
PTCH1-220ENST00000550136 UPF1Q92900 1129 aaKnown RBP eCLIP11.82□□□□□ -0.52
PTCH1-220ENST00000550136 DHX29Q7Z478 1369 aaKnown RBP11.81□□□□□ -0.52
PTCH1-220ENST00000550136 UQCRHLA0A096LP55 91 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms