RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 NCOA3Q9Y6Q9 1424 aa29.92■■■□□ 2.38
VPS29-206ENST00000549578 ADGRL3Q9HAR2 1447 aa29.91■■■□□ 2.38
VPS29-206ENST00000549578 MINK1Q8N4C8 1332 aaPredicted RBP29.9■■■□□ 2.38
VPS29-206ENST00000549578 ST20-MTHFSA0A0A6YYL1 179 aa29.9■■■□□ 2.38
VPS29-206ENST00000549578 CERKQ8TCT0 537 aa29.88■■■□□ 2.37
VPS29-206ENST00000549578 HIRIP3Q9BW71 556 aaPredicted RBP29.88■■■□□ 2.37
VPS29-206ENST00000549578 EIF4G2P78344 907 aaKnown RBP eCLIP29.87■■■□□ 2.37
VPS29-206ENST00000549578 MSH6P52701 1360 aa29.86■■■□□ 2.37
VPS29-206ENST00000549578 C19orf44Q9H6X5 657 aa29.86■■■□□ 2.37
VPS29-206ENST00000549578 HSPA5P11021 654 aaKnown RBP29.85■■■□□ 2.37
VPS29-206ENST00000549578 ADGRB2O60241 1585 aa29.83■■■□□ 2.37
VPS29-206ENST00000549578 CDC42BPGQ6DT37 1551 aa29.81■■■□□ 2.36
VPS29-206ENST00000549578 IQSEC2Q5JU85 1478 aa29.81■■■□□ 2.36
VPS29-206ENST00000549578 TESK2Q96S53 571 aa29.81■■■□□ 2.36
VPS29-206ENST00000549578 SBNO2Q9Y2G9 1366 aa29.8■■■□□ 2.36
VPS29-206ENST00000549578 DCCP43146 1447 aa29.79■■■□□ 2.36
VPS29-206ENST00000549578 ATF3P18847 181 aa29.78■■■□□ 2.36
VPS29-206ENST00000549578 TULP4Q9NRJ4 1543 aa29.77■■■□□ 2.36
VPS29-206ENST00000549578 WASLO00401 505 aaPredicted RBP29.76■■■□□ 2.35
VPS29-206ENST00000549578 CADPS2Q86UW7 1296 aa29.75■■■□□ 2.35
VPS29-206ENST00000549578 FMN2Q9NZ56 1722 aa29.74■■■□□ 2.35
VPS29-206ENST00000549578 NUTM2FA1L443 756 aa29.73■■■□□ 2.35
VPS29-206ENST00000549578 CDK19Q9BWU1 502 aa29.72■■■□□ 2.35
VPS29-206ENST00000549578 EVC2Q86UK5 1308 aa29.72■■■□□ 2.35
VPS29-206ENST00000549578 MST1RQ04912 1400 aa29.71■■■□□ 2.35
VPS29-206ENST00000549578 DISP3Q9P2K9 1392 aa29.69■■■□□ 2.34
VPS29-206ENST00000549578 SRPK2P78362 688 aaKnown RBP29.69■■■□□ 2.34
VPS29-206ENST00000549578 UBAP1LF5GYI3 381 aa29.68■■■□□ 2.34
VPS29-206ENST00000549578 CABP2Q9NPB3 220 aa29.68■■■□□ 2.34
VPS29-206ENST00000549578 TMF1P82094 1093 aa29.67■■■□□ 2.34
VPS29-206ENST00000549578 USP32Q8NFA0 1604 aa29.66■■■□□ 2.34
VPS29-206ENST00000549578 SLC24A1O60721 1099 aa29.66■■■□□ 2.34
VPS29-206ENST00000549578 TOM1O60784 492 aa29.66■■■□□ 2.34
VPS29-206ENST00000549578 SLAIN2Q9P270 581 aa29.66■■■□□ 2.34
VPS29-206ENST00000549578 PRR36Q9H6K5 1346 aa29.65■■■□□ 2.34
VPS29-206ENST00000549578 C1orf167Q5SNV9 1468 aa29.65■■■□□ 2.34
VPS29-206ENST00000549578 ATP7BP35670 1465 aa29.64■■■□□ 2.34
VPS29-206ENST00000549578 RGPD8O14715 1765 aaPredicted RBP29.64■■■□□ 2.33
VPS29-206ENST00000549578 ANKARQ7Z5J8 1434 aa29.63■■■□□ 2.33
VPS29-206ENST00000549578 NUDT16Q96DE0 195 aaKnown RBP29.62■■■□□ 2.33
VPS29-206ENST00000549578 C11orf95C9JLR9 678 aaPredicted RBP29.59■■■□□ 2.33
VPS29-206ENST00000549578 PIP4K2BP78356 416 aa29.59■■■□□ 2.33
VPS29-206ENST00000549578 ORAI2Q96SN7 254 aa29.59■■■□□ 2.33
VPS29-206ENST00000549578 ESCO1Q5FWF5 840 aa29.58■■■□□ 2.33
VPS29-206ENST00000549578 TOPAZ1Q8N9V7 1692 aa29.56■■■□□ 2.32
VPS29-206ENST00000549578 SCAF1Q9H7N4 1312 aaKnown RBP29.56■■■□□ 2.32
VPS29-206ENST00000549578 CCDC61Q9Y6R9 512 aa29.55■■■□□ 2.32
VPS29-206ENST00000549578 ATAD2Q6PL18 1390 aa29.55■■■□□ 2.32
VPS29-206ENST00000549578 ITSN1Q15811 1721 aa29.55■■■□□ 2.32
VPS29-206ENST00000549578 CDCA8Q53HL2 280 aa29.55■■■□□ 2.32
VPS29-206ENST00000549578 BRINP3Q76B58 766 aa29.55■■■□□ 2.32
VPS29-206ENST00000549578 ROBO1Q9Y6N7 1651 aa29.54■■■□□ 2.32
VPS29-206ENST00000549578 PUS7Q96PZ0 661 aaKnown RBP29.54■■■□□ 2.32
VPS29-206ENST00000549578 POLR3GLQ9BT43 218 aa29.54■■■□□ 2.32
VPS29-206ENST00000549578 PPIP5K1Q6PFW1 1433 aa29.53■■■□□ 2.32
VPS29-206ENST00000549578 PMFBP1Q8TBY8 1022 aa29.51■■■□□ 2.32
VPS29-206ENST00000549578 PHF8Q9UPP1 1060 aa29.51■■■□□ 2.32
VPS29-206ENST00000549578 KIF7Q2M1P5 1343 aa29.5■■■□□ 2.31
VPS29-206ENST00000549578 CABP1Q9NZU7 370 aa29.5■■■□□ 2.31
VPS29-206ENST00000549578 TMC1Q8TDI8 760 aa29.49■■■□□ 2.31
VPS29-206ENST00000549578 KIF1AQ12756 1690 aa29.48■■■□□ 2.31
VPS29-206ENST00000549578 WASHC2AQ641Q2 1341 aa29.46■■■□□ 2.31
VPS29-206ENST00000549578 PLEKHG3A1L390 1219 aa29.45■■■□□ 2.31
VPS29-206ENST00000549578 DDX17Q92841 729 aaKnown RBP29.45■■■□□ 2.31
VPS29-206ENST00000549578 SLC12A5Q9H2X9 1139 aa29.45■■■□□ 2.31
VPS29-206ENST00000549578 CCDC7Q96M83 1385 aa29.45■■■□□ 2.31
VPS29-206ENST00000549578 MYOM1P52179 1685 aa29.45■■■□□ 2.3
VPS29-206ENST00000549578 FOXO3O43524 673 aa29.45■■■□□ 2.3
VPS29-206ENST00000549578 NGDNQ8NEJ9 315 aaKnown RBP29.43■■■□□ 2.3
VPS29-206ENST00000549578 ACEP12821 1306 aa29.43■■■□□ 2.3
VPS29-206ENST00000549578 NINLQ9Y2I6 1382 aa29.41■■■□□ 2.3
VPS29-206ENST00000549578 NHSL1Q5SYE7 1610 aa29.41■■■□□ 2.3
VPS29-206ENST00000549578 POLR3AO14802 1390 aaPredicted RBP29.41■■■□□ 2.3
VPS29-206ENST00000549578 XPCQ01831 940 aaPredicted RBP29.39■■■□□ 2.3
VPS29-206ENST00000549578 CD163L1Q9NR16 1453 aa29.39■■■□□ 2.29
VPS29-206ENST00000549578 NPHP3Q7Z494 1330 aa29.38■■■□□ 2.29
VPS29-206ENST00000549578 FBXO41Q8TF61 875 aa29.38■■■□□ 2.29
VPS29-206ENST00000549578 AHDC1Q5TGY3 1603 aaPredicted RBP29.38■■■□□ 2.29
VPS29-206ENST00000549578 AKAP12Q02952 1782 aa29.36■■■□□ 2.29
VPS29-206ENST00000549578 PSME1Q06323 249 aa29.35■■■□□ 2.29
VPS29-206ENST00000549578 CPSF1Q10570 1443 aaKnown RBP29.35■■■□□ 2.29
VPS29-206ENST00000549578 A0A1W2PP64 1363 aa29.35■■■□□ 2.29
VPS29-206ENST00000549578 PXDNQ92626 1479 aa29.34■■■□□ 2.29
VPS29-206ENST00000549578 PHLPP1O60346 1717 aa29.34■■■□□ 2.29
VPS29-206ENST00000549578 ZNF316A6NFI3 1004 aaPredicted RBP29.34■■■□□ 2.29
VPS29-206ENST00000549578 TERF2IPQ9NYB0 399 aa29.34■■■□□ 2.29
VPS29-206ENST00000549578 KRT28Q7Z3Y7 464 aa29.33■■■□□ 2.29
VPS29-206ENST00000549578 HDGFL2Q7Z4V5 671 aaPredicted RBP29.33■■■□□ 2.29
VPS29-206ENST00000549578 ANKRD36BQ8N2N9 1353 aa29.33■■■□□ 2.29
VPS29-206ENST00000549578 SOS2Q07890 1332 aaPredicted RBP29.32■■■□□ 2.28
VPS29-206ENST00000549578 USP6P35125 1406 aa29.32■■■□□ 2.28
VPS29-206ENST00000549578 KTN1Q86UP2 1357 aaKnown RBP29.31■■■□□ 2.28
VPS29-206ENST00000549578 MON2Q7Z3U7 1717 aa29.3■■■□□ 2.28
VPS29-206ENST00000549578 ZNF692Q9BU19 519 aaPredicted RBP29.3■■■□□ 2.28
VPS29-206ENST00000549578 COL16A1Q07092 1604 aaPredicted RBP29.29■■■□□ 2.28
VPS29-206ENST00000549578 HSPA1LP34931 641 aa29.29■■■□□ 2.28
VPS29-206ENST00000549578 TRPM3Q9HCF6 1732 aaPredicted RBP29.28■■■□□ 2.28
VPS29-206ENST00000549578 PANK3Q9H999 370 aa29.27■■■□□ 2.28
VPS29-206ENST00000549578 NRKQ7Z2Y5 1582 aa29.26■■■□□ 2.27
VPS29-206ENST00000549578 PAK3O75914 559 aaPredicted RBP29.25■■■□□ 2.27
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms