RNA–Protein interactions for RNA: ENST00000548645.5

NPAS3-206, Transcript of neuronal PAS domain protein 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NPAS3, Length 2,926 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3-206ENST00000548645 IQSEC2Q5JU85 1478 aa29.31■■■□□ 2.28
NPAS3-206ENST00000548645 TRAPPC8Q9Y2L5 1435 aa29.31■■■□□ 2.28
NPAS3-206ENST00000548645 ABCC1P33527 1531 aa29.31■■■□□ 2.28
NPAS3-206ENST00000548645 SHPRHQ149N8 1683 aa29.31■■■□□ 2.28
NPAS3-206ENST00000548645 SHROOM2Q13796 1616 aa29.3■■■□□ 2.28
NPAS3-206ENST00000548645 NEURL4Q96JN8 1562 aa29.3■■■□□ 2.28
NPAS3-206ENST00000548645 BCL2L13Q9BXK5 485 aa29.3■■■□□ 2.28
NPAS3-206ENST00000548645 CCDC27Q2M243 656 aa29.3■■■□□ 2.28
NPAS3-206ENST00000548645 SPRYD3Q8NCJ5 442 aa29.3■■■□□ 2.28
NPAS3-206ENST00000548645 ARXQ96QS3 562 aa29.3■■■□□ 2.28
NPAS3-206ENST00000548645 C22orf23Q9BZE7 217 aa29.3■■■□□ 2.28
NPAS3-206ENST00000548645 SPAG9O60271 1321 aaKnown RBP29.29■■■□□ 2.28
NPAS3-206ENST00000548645 KANK1Q14678 1352 aa29.29■■■□□ 2.28
NPAS3-206ENST00000548645 TET3O43151 1660 aa29.28■■■□□ 2.28
NPAS3-206ENST00000548645 MVPQ14764 893 aaKnown RBP29.28■■■□□ 2.28
NPAS3-206ENST00000548645 MYOM2P54296 1465 aa29.28■■■□□ 2.28
NPAS3-206ENST00000548645 SBNO2Q9Y2G9 1366 aa29.28■■■□□ 2.28
NPAS3-206ENST00000548645 MAP3K4Q9Y6R4 1608 aa29.28■■■□□ 2.28
NPAS3-206ENST00000548645 MYH16Q9H6N6 1097 aa29.27■■■□□ 2.28
NPAS3-206ENST00000548645 RTEL1-TNFRSF6BF6WH68 1400 aa29.27■■■□□ 2.28
NPAS3-206ENST00000548645 GZF1Q9H116 711 aaPredicted RBP29.27■■■□□ 2.28
NPAS3-206ENST00000548645 TRAK2O60296 914 aa29.27■■■□□ 2.28
NPAS3-206ENST00000548645 CLCN1P35523 988 aa29.27■■■□□ 2.28
NPAS3-206ENST00000548645 PNNQ9H307 717 aaKnown RBP29.26■■■□□ 2.27
NPAS3-206ENST00000548645 ABCA6Q8N139 1617 aa29.25■■■□□ 2.27
NPAS3-206ENST00000548645 MRE11P49959 708 aa29.25■■■□□ 2.27
NPAS3-206ENST00000548645 NSD3Q9BZ95 1437 aa29.25■■■□□ 2.27
NPAS3-206ENST00000548645 DEPDC5O75140 1603 aa29.24■■■□□ 2.27
NPAS3-206ENST00000548645 NCBP3Q53F19 620 aaKnown RBP29.24■■■□□ 2.27
NPAS3-206ENST00000548645 ZKSCAN2Q63HK3 967 aa29.24■■■□□ 2.27
NPAS3-206ENST00000548645 PANK2Q9BZ23 570 aa29.23■■■□□ 2.27
NPAS3-206ENST00000548645 MFAP1P55081 439 aaKnown RBP29.23■■■□□ 2.27
NPAS3-206ENST00000548645 ADGRF5Q8IZF2 1346 aa29.22■■■□□ 2.27
NPAS3-206ENST00000548645 TNNT2P45379 298 aaPredicted RBP29.22■■■□□ 2.27
NPAS3-206ENST00000548645 FTSJ3Q8IY81 847 aaKnown RBP29.22■■■□□ 2.27
NPAS3-206ENST00000548645 CFAP53Q96M91 514 aa29.21■■■□□ 2.27
NPAS3-206ENST00000548645 MYO3AQ8NEV4 1616 aa29.21■■■□□ 2.27
NPAS3-206ENST00000548645 DZIP1LQ8IYY4 767 aaKnown RBP29.21■■■□□ 2.27
NPAS3-206ENST00000548645 DDX11L8A8MPP1 907 aa29.21■■■□□ 2.27
NPAS3-206ENST00000548645 HSCBQ8IWL3 235 aa29.2■■■□□ 2.26
NPAS3-206ENST00000548645 NAP1L5Q96NT1 182 aaPredicted RBP29.2■■■□□ 2.26
NPAS3-206ENST00000548645 ISY1Q9ULR0 285 aaKnown RBP29.19■■■□□ 2.26
NPAS3-206ENST00000548645 OSCARQ8IYS5 282 aa29.19■■■□□ 2.26
NPAS3-206ENST00000548645 CT47B1P0C2W7 299 aaPredicted RBP29.18■■■□□ 2.26
NPAS3-206ENST00000548645 ZFYVE16Q7Z3T8 1539 aa29.18■■■□□ 2.26
NPAS3-206ENST00000548645 HDAC1Q13547 482 aaPredicted RBP29.17■■■□□ 2.26
NPAS3-206ENST00000548645 ZNF518AQ6AHZ1 1483 aa29.16■■■□□ 2.26
NPAS3-206ENST00000548645 MTHFSP49914 203 aa29.16■■■□□ 2.26
NPAS3-206ENST00000548645 AFAP1Q8N556 730 aa29.15■■■□□ 2.26
NPAS3-206ENST00000548645 VWDEQ8N2E2 1590 aa29.15■■■□□ 2.26
NPAS3-206ENST00000548645 GRPEL1Q9HAV7 217 aa29.13■■■□□ 2.25
NPAS3-206ENST00000548645 GLIPR1L2Q4G1C9 344 aa29.13■■■□□ 2.25
NPAS3-206ENST00000548645 SLC12A5Q9H2X9 1139 aa29.12■■■□□ 2.25
NPAS3-206ENST00000548645 ZNF692Q9BU19 519 aaPredicted RBP29.11■■■□□ 2.25
NPAS3-206ENST00000548645 DDX19BQ9UMR2 479 aa29.11■■■□□ 2.25
NPAS3-206ENST00000548645 KIF1BO60333 1816 aa29.1■■■□□ 2.25
NPAS3-206ENST00000548645 NRXN1Q9ULB1 1477 aa29.1■■■□□ 2.25
NPAS3-206ENST00000548645 SMC4Q9NTJ3 1288 aa29.09■■■□□ 2.25
NPAS3-206ENST00000548645 NCOA3Q9Y6Q9 1424 aa29.09■■■□□ 2.25
NPAS3-206ENST00000548645 USP32Q8NFA0 1604 aa29.08■■■□□ 2.25
NPAS3-206ENST00000548645 ADGRL1O94910 1474 aa29.08■■■□□ 2.25
NPAS3-206ENST00000548645 UGGT1Q9NYU2 1555 aa29.08■■■□□ 2.25
NPAS3-206ENST00000548645 IFT172Q9UG01 1749 aa29.08■■■□□ 2.25
NPAS3-206ENST00000548645 SMC5Q8IY18 1101 aa29.08■■■□□ 2.25
NPAS3-206ENST00000548645 KIF3BO15066 747 aa29.07■■■□□ 2.24
NPAS3-206ENST00000548645 U2AF1L5P0DN76 240 aaPredicted RBP29.07■■■□□ 2.24
NPAS3-206ENST00000548645 U2AF1Q01081 240 aaKnown RBP eCLIP29.07■■■□□ 2.24
NPAS3-206ENST00000548645 SETBP1Q9Y6X0 1596 aa29.07■■■□□ 2.24
NPAS3-206ENST00000548645 SNX21Q969T3 373 aa29.07■■■□□ 2.24
NPAS3-206ENST00000548645 TRIM27P14373 513 aa29.06■■■□□ 2.24
NPAS3-206ENST00000548645 HSP90AA1P07900 732 aaKnown RBP29.06■■■□□ 2.24
NPAS3-206ENST00000548645 DDIT3P35638 169 aa29.06■■■□□ 2.24
NPAS3-206ENST00000548645 ITPRIPQ8IWB1 547 aa29.06■■■□□ 2.24
NPAS3-206ENST00000548645 RBM25P49756 843 aaKnown RBP29.05■■■□□ 2.24
NPAS3-206ENST00000548645 CIZ1Q9ULV3 898 aaPredicted RBP29.04■■■□□ 2.24
NPAS3-206ENST00000548645 ESPNB1AK53 854 aa29.04■■■□□ 2.24
NPAS3-206ENST00000548645 TRAK1Q9UPV9 953 aa29.04■■■□□ 2.24
NPAS3-206ENST00000548645 ARAP3Q8WWN8 1544 aa29.03■■■□□ 2.24
NPAS3-206ENST00000548645 ATF7IPQ6VMQ6 1270 aa29.03■■■□□ 2.24
NPAS3-206ENST00000548645 ADGRB2O60241 1585 aa29.03■■■□□ 2.24
NPAS3-206ENST00000548645 ZCCHC11Q5TAX3 1644 aaKnown RBP29.03■■■□□ 2.24
NPAS3-206ENST00000548645 TSR2Q969E8 191 aaKnown RBP29.03■■■□□ 2.24
NPAS3-206ENST00000548645 EXOSC9Q06265 439 aaKnown RBP29.02■■■□□ 2.24
NPAS3-206ENST00000548645 GBP4Q96PP9 640 aa29.02■■■□□ 2.24
NPAS3-206ENST00000548645 ATP7AQ04656 1500 aa29.02■■■□□ 2.24
NPAS3-206ENST00000548645 NSD2O96028 1365 aa29.01■■■□□ 2.23
NPAS3-206ENST00000548645 RRP9O43818 475 aaKnown RBP29■■■□□ 2.23
NPAS3-206ENST00000548645 PTMSP20962 102 aa29■■■□□ 2.23
NPAS3-206ENST00000548645 SSH1Q8WYL5 1049 aa29■■■□□ 2.23
NPAS3-206ENST00000548645 SKOR2Q2VWA4 1001 aaPredicted RBP29■■■□□ 2.23
NPAS3-206ENST00000548645 HSP90AA2PQ14568 343 aaPredicted RBP28.99■■■□□ 2.23
NPAS3-206ENST00000548645 TNPO1Q92973 898 aaKnown RBP28.99■■■□□ 2.23
NPAS3-206ENST00000548645 NOS1P29475 1434 aa28.99■■■□□ 2.23
NPAS3-206ENST00000548645 ZC3H13Q5T200 1668 aaKnown RBP28.99■■■□□ 2.23
NPAS3-206ENST00000548645 QRICH2Q9H0J4 1663 aa28.99■■■□□ 2.23
NPAS3-206ENST00000548645 TRIM44Q96DX7 344 aaPredicted RBP28.99■■■□□ 2.23
NPAS3-206ENST00000548645 MROH2AA6NES4 1674 aa28.98■■■□□ 2.23
NPAS3-206ENST00000548645 INO80Q9ULG1 1556 aaPredicted RBP28.97■■■□□ 2.23
NPAS3-206ENST00000548645 HSP90AB1P08238 724 aaKnown RBP28.97■■■□□ 2.23
NPAS3-206ENST00000548645 ZBTB40Q9NUA8 1239 aa28.96■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms