RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 SENP3Q9H4L4 574 aaPredicted RBP24.45■■□□□ 1.5
PRPF40B-208ENST00000548436 APAF1O14727 1248 aa24.44■■□□□ 1.5
PRPF40B-208ENST00000548436 PUS7Q96PZ0 661 aaKnown RBP24.44■■□□□ 1.5
PRPF40B-208ENST00000548436 SHPRHQ149N8 1683 aa24.44■■□□□ 1.5
PRPF40B-208ENST00000548436 MORC1Q86VD1 984 aa24.44■■□□□ 1.5
PRPF40B-208ENST00000548436 MYT1Q01538 1121 aa24.42■■□□□ 1.5
PRPF40B-208ENST00000548436 REREQ9P2R6 1566 aa24.42■■□□□ 1.5
PRPF40B-208ENST00000548436 SLFN5Q08AF3 891 aa24.42■■□□□ 1.5
PRPF40B-208ENST00000548436 SAFB2Q14151 953 aaKnown RBP eCLIP24.41■■□□□ 1.5
PRPF40B-208ENST00000548436 STK26Q9P289 416 aa24.41■■□□□ 1.5
PRPF40B-208ENST00000548436 TNNT2P45379 298 aaPredicted RBP24.4■■□□□ 1.5
PRPF40B-208ENST00000548436 CABP2Q9NPB3 220 aa24.4■■□□□ 1.5
PRPF40B-208ENST00000548436 CLTCQ00610 1675 aaKnown RBP24.4■■□□□ 1.5
PRPF40B-208ENST00000548436 TRMT2AQ8IZ69 625 aaKnown RBP24.39■■□□□ 1.5
PRPF40B-208ENST00000548436 AGLP35573 1532 aa24.39■■□□□ 1.5
PRPF40B-208ENST00000548436 CRBNQ96SW2 442 aa24.39■■□□□ 1.49
PRPF40B-208ENST00000548436 ANKRD36BQ8N2N9 1353 aa24.39■■□□□ 1.49
PRPF40B-208ENST00000548436 CGNL1Q0VF96 1302 aa24.38■■□□□ 1.49
PRPF40B-208ENST00000548436 SPINK5Q9NQ38 1064 aaPredicted RBP24.38■■□□□ 1.49
PRPF40B-208ENST00000548436 PTPRMP28827 1452 aa24.38■■□□□ 1.49
PRPF40B-208ENST00000548436 C20orf194Q5TEA3 1177 aa24.36■■□□□ 1.49
PRPF40B-208ENST00000548436 ALKQ9UM73 1620 aa24.34■■□□□ 1.49
PRPF40B-208ENST00000548436 YTHDC2Q9H6S0 1430 aaKnown RBP24.34■■□□□ 1.49
PRPF40B-208ENST00000548436 PPP6R1Q9UPN7 881 aa24.33■■□□□ 1.48
PRPF40B-208ENST00000548436 DMRT2Q9Y5R5 561 aa24.32■■□□□ 1.48
PRPF40B-208ENST00000548436 MTHFSP49914 203 aa24.31■■□□□ 1.48
PRPF40B-208ENST00000548436 NGEFQ8N5V2 710 aa24.31■■□□□ 1.48
PRPF40B-208ENST00000548436 PRAM1Q96QH2 718 aa24.31■■□□□ 1.48
PRPF40B-208ENST00000548436 NSD2O96028 1365 aa24.31■■□□□ 1.48
PRPF40B-208ENST00000548436 NKTRP30414 1462 aaKnown RBP24.31■■□□□ 1.48
PRPF40B-208ENST00000548436 SRPK2P78362 688 aaKnown RBP24.3■■□□□ 1.48
PRPF40B-208ENST00000548436 STAG3Q9UJ98 1225 aa24.3■■□□□ 1.48
PRPF40B-208ENST00000548436 A0A1W2PP64 1363 aa24.3■■□□□ 1.48
PRPF40B-208ENST00000548436 SPATA31D1Q6ZQQ2 1576 aa24.29■■□□□ 1.48
PRPF40B-208ENST00000548436 E9PSI1 815 aa24.29■■□□□ 1.48
PRPF40B-208ENST00000548436 MINK1Q8N4C8 1332 aaPredicted RBP24.28■■□□□ 1.48
PRPF40B-208ENST00000548436 NINLQ9Y2I6 1382 aa24.28■■□□□ 1.48
PRPF40B-208ENST00000548436 A2ML1A8K2U0 1454 aa24.27■■□□□ 1.48
PRPF40B-208ENST00000548436 WWC1Q8IX03 1113 aa24.26■■□□□ 1.47
PRPF40B-208ENST00000548436 POGKQ9P215 609 aa24.26■■□□□ 1.47
PRPF40B-208ENST00000548436 MLECQ14165 292 aa24.26■■□□□ 1.47
PRPF40B-208ENST00000548436 ABCC11Q96J66 1382 aa24.26■■□□□ 1.47
PRPF40B-208ENST00000548436 RUNDC1Q96C34 613 aa24.25■■□□□ 1.47
PRPF40B-208ENST00000548436 IQSEC2Q5JU85 1478 aa24.25■■□□□ 1.47
PRPF40B-208ENST00000548436 ATAD2Q6PL18 1390 aa24.24■■□□□ 1.47
PRPF40B-208ENST00000548436 ARHGEF40Q8TER5 1519 aa24.24■■□□□ 1.47
PRPF40B-208ENST00000548436 CD163L1Q9NR16 1453 aa24.24■■□□□ 1.47
PRPF40B-208ENST00000548436 SETD1AO15047 1707 aaKnown RBP24.23■■□□□ 1.47
PRPF40B-208ENST00000548436 GOLGA6L2Q8N9W4 650 aaPredicted RBP24.23■■□□□ 1.47
PRPF40B-208ENST00000548436 CFAP53Q96M91 514 aa24.23■■□□□ 1.47
PRPF40B-208ENST00000548436 TCERG1O14776 1098 aaKnown RBP24.23■■□□□ 1.47
PRPF40B-208ENST00000548436 ANKRD26Q9UPS8 1709 aa24.22■■□□□ 1.47
PRPF40B-208ENST00000548436 TCP11L2Q8N4U5 519 aa24.22■■□□□ 1.47
PRPF40B-208ENST00000548436 RRP7AQ9Y3A4 280 aaKnown RBP24.21■■□□□ 1.47
PRPF40B-208ENST00000548436 RIMS2Q9UQ26 1411 aa24.21■■□□□ 1.47
PRPF40B-208ENST00000548436 BCAR3O75815 825 aa24.2■■□□□ 1.47
PRPF40B-208ENST00000548436 NEUROD2Q15784 382 aa24.2■■□□□ 1.47
PRPF40B-208ENST00000548436 PHF23Q9BUL5 403 aaPredicted RBP24.19■■□□□ 1.46
PRPF40B-208ENST00000548436 CDK19Q9BWU1 502 aa24.19■■□□□ 1.46
PRPF40B-208ENST00000548436 GGNBP2Q9H3C7 697 aa24.19■■□□□ 1.46
PRPF40B-208ENST00000548436 TERF2IPQ9NYB0 399 aa24.18■■□□□ 1.46
PRPF40B-208ENST00000548436 KDM2BQ8NHM5 1336 aa24.17■■□□□ 1.46
PRPF40B-208ENST00000548436 NLRP1Q9C000 1473 aa24.17■■□□□ 1.46
PRPF40B-208ENST00000548436 DLC1Q96QB1 1528 aa24.17■■□□□ 1.46
PRPF40B-208ENST00000548436 FYB1O15117 783 aa24.16■■□□□ 1.46
PRPF40B-208ENST00000548436 NRXN3Q9Y4C0 1643 aa24.15■■□□□ 1.46
PRPF40B-208ENST00000548436 SKAP1Q86WV1 359 aa24.15■■□□□ 1.46
PRPF40B-208ENST00000548436 MS4A1P11836 297 aa24.14■■□□□ 1.46
PRPF40B-208ENST00000548436 MED14O60244 1454 aa24.14■■□□□ 1.46
PRPF40B-208ENST00000548436 KIF20BQ96Q89 1820 aa24.14■■□□□ 1.45
PRPF40B-208ENST00000548436 U2AF1L5P0DN76 240 aaPredicted RBP24.14■■□□□ 1.45
PRPF40B-208ENST00000548436 U2AF1Q01081 240 aaKnown RBP eCLIP24.14■■□□□ 1.45
PRPF40B-208ENST00000548436 WAPLQ7Z5K2 1190 aa24.14■■□□□ 1.45
PRPF40B-208ENST00000548436 ADGRB2O60241 1585 aa24.12■■□□□ 1.45
PRPF40B-208ENST00000548436 COL3A1P02461 1466 aaPredicted RBP24.12■■□□□ 1.45
PRPF40B-208ENST00000548436 CABP1Q9NZU7 370 aa24.12■■□□□ 1.45
PRPF40B-208ENST00000548436 ZMYM3Q14202 1370 aa24.12■■□□□ 1.45
PRPF40B-208ENST00000548436 PDE4AP27815 886 aa24.12■■□□□ 1.45
PRPF40B-208ENST00000548436 CCDC27Q2M243 656 aa24.12■■□□□ 1.45
PRPF40B-208ENST00000548436 ERICH6Q7L0X2 663 aa24.12■■□□□ 1.45
PRPF40B-208ENST00000548436 WDR63Q8IWG1 891 aa24.12■■□□□ 1.45
PRPF40B-208ENST00000548436 HDGFL2Q7Z4V5 671 aaPredicted RBP24.11■■□□□ 1.45
PRPF40B-208ENST00000548436 CENPQQ7L2Z9 268 aaPredicted RBP24.09■■□□□ 1.45
PRPF40B-208ENST00000548436 BACH2Q9BYV9 841 aa24.09■■□□□ 1.45
PRPF40B-208ENST00000548436 ANP32AP39687 249 aaKnown RBP24.08■■□□□ 1.45
PRPF40B-208ENST00000548436 NCBP3Q53F19 620 aaKnown RBP24.07■■□□□ 1.44
PRPF40B-208ENST00000548436 ESF1Q9H501 851 aaKnown RBP24.07■■□□□ 1.44
PRPF40B-208ENST00000548436 METP08581 1390 aa24.06■■□□□ 1.44
PRPF40B-208ENST00000548436 PLEKHF1Q96S99 279 aa24.05■■□□□ 1.44
PRPF40B-208ENST00000548436 U2SURPO15042 1029 aaKnown RBP24.04■■□□□ 1.44
PRPF40B-208ENST00000548436 PDE3AQ14432 1141 aa24.04■■□□□ 1.44
PRPF40B-208ENST00000548436 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.04■■□□□ 1.44
PRPF40B-208ENST00000548436 NOP58Q9Y2X3 529 aaKnown RBP24.04■■□□□ 1.44
PRPF40B-208ENST00000548436 IPO9Q96P70 1041 aaKnown RBP24.04■■□□□ 1.44
PRPF40B-208ENST00000548436 ATP7BP35670 1465 aa24.03■■□□□ 1.44
PRPF40B-208ENST00000548436 RARSP54136 660 aaKnown RBP24.03■■□□□ 1.44
PRPF40B-208ENST00000548436 PAK3O75914 559 aaPredicted RBP24.01■■□□□ 1.43
PRPF40B-208ENST00000548436 PNPLA6Q8IY17 1366 aa24.01■■□□□ 1.43
PRPF40B-208ENST00000548436 KNDC1Q76NI1 1749 aa24.01■■□□□ 1.43
PRPF40B-208ENST00000548436 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms