RNA–Protein interactions for RNA: ENST00000546298.5

YBX3-218, Transcript of Y-box binding protein 3, human

TSL 4

Gene YBX3, Length 564 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-218	ENST00000546298	DDX17	Q92841	729 aa	Known RBP	13.72	□□□□□ -0.21
YBX3-218	ENST00000546298	PIK3C2G	O75747	1445 aa		13.72	□□□□□ -0.21
YBX3-218	ENST00000546298	CFAP70	Q5T0N1	1121 aa		13.71	□□□□□ -0.21
YBX3-218	ENST00000546298	SOS2	Q07890	1332 aa	Predicted RBP	13.7	□□□□□ -0.22
YBX3-218	ENST00000546298	NPHP3	Q7Z494	1330 aa		13.69	□□□□□ -0.22
YBX3-218	ENST00000546298	PPL	O60437	1756 aa		13.69	□□□□□ -0.22
YBX3-218	ENST00000546298	YTHDC2	Q9H6S0	1430 aa	Known RBP	13.69	□□□□□ -0.22
YBX3-218	ENST00000546298	PNPLA6	Q8IY17	1366 aa		13.69	□□□□□ -0.22
YBX3-218	ENST00000546298	LRP6	O75581	1613 aa		13.68	□□□□□ -0.22
YBX3-218	ENST00000546298	KDM2A	Q9Y2K7	1162 aa		13.68	□□□□□ -0.22
YBX3-218	ENST00000546298	MYOM2	P54296	1465 aa		13.67	□□□□□ -0.22
YBX3-218	ENST00000546298	DCAF11	Q8TEB1	546 aa		13.67	□□□□□ -0.22
YBX3-218	ENST00000546298	NRXN1	Q9ULB1	1477 aa		13.67	□□□□□ -0.22
YBX3-218	ENST00000546298	NUTM2F	A1L443	756 aa		13.66	□□□□□ -0.22
YBX3-218	ENST00000546298	FOXO3	O43524	673 aa		13.66	□□□□□ -0.22
YBX3-218	ENST00000546298	RXRB	P28702	533 aa		13.66	□□□□□ -0.22
YBX3-218	ENST00000546298	POGK	Q9P215	609 aa		13.66	□□□□□ -0.22
YBX3-218	ENST00000546298	SETD1A	O15047	1707 aa	Known RBP	13.66	□□□□□ -0.22
YBX3-218	ENST00000546298	PLEKHH1	Q9ULM0	1364 aa		13.66	□□□□□ -0.22
YBX3-218	ENST00000546298	AFF2	P51816	1311 aa		13.65	□□□□□ -0.22
YBX3-218	ENST00000546298	NGLY1	Q96IV0	654 aa		13.65	□□□□□ -0.22
YBX3-218	ENST00000546298	C8orf37	Q96NL8	207 aa		13.65	□□□□□ -0.22
YBX3-218	ENST00000546298	PRAM1	Q96QH2	718 aa		13.65	□□□□□ -0.22
YBX3-218	ENST00000546298	NALCN	Q8IZF0	1738 aa		13.64	□□□□□ -0.23
YBX3-218	ENST00000546298	CDC42BPG	Q6DT37	1551 aa		13.64	□□□□□ -0.23
YBX3-218	ENST00000546298	SHPRH	Q149N8	1683 aa		13.63	□□□□□ -0.23
YBX3-218	ENST00000546298	ADAMTS2	O95450	1211 aa		13.63	□□□□□ -0.23
YBX3-218	ENST00000546298	SAFB2	Q14151	953 aa	Known RBP eCLIP	13.62	□□□□□ -0.23
YBX3-218	ENST00000546298	QTRT2	Q9H974	415 aa	Known RBP	13.62	□□□□□ -0.23
YBX3-218	ENST00000546298	NHSL1	Q5SYE7	1610 aa		13.61	□□□□□ -0.23
YBX3-218	ENST00000546298	RBM6	P78332	1123 aa	Known RBP	13.61	□□□□□ -0.23
YBX3-218	ENST00000546298	XPC	Q01831	940 aa	Predicted RBP	13.61	□□□□□ -0.23
YBX3-218	ENST00000546298	PSME1	Q06323	249 aa		13.61	□□□□□ -0.23
YBX3-218	ENST00000546298	PHF8	Q9UPP1	1060 aa		13.61	□□□□□ -0.23
YBX3-218	ENST00000546298	TRAK1	Q9UPV9	953 aa		13.61	□□□□□ -0.23
YBX3-218	ENST00000546298	KRT28	Q7Z3Y7	464 aa		13.6	□□□□□ -0.23
YBX3-218	ENST00000546298	IFT172	Q9UG01	1749 aa		13.59	□□□□□ -0.23
YBX3-218	ENST00000546298	FNBP4	Q8N3X1	1017 aa	Predicted RBP	13.58	□□□□□ -0.24
YBX3-218	ENST00000546298	USP21	Q9UK80	565 aa		13.58	□□□□□ -0.24
YBX3-218	ENST00000546298	SPATA31A3	Q5VYP0	1347 aa		13.58	□□□□□ -0.24
YBX3-218	ENST00000546298	TRPC5	Q9UL62	973 aa	Predicted RBP	13.57	□□□□□ -0.24
YBX3-218	ENST00000546298	DLC1	Q96QB1	1528 aa		13.57	□□□□□ -0.24
YBX3-218	ENST00000546298	LAMC1	P11047	1609 aa		13.57	□□□□□ -0.24
YBX3-218	ENST00000546298	EIF3A	Q14152	1382 aa	Known RBP	13.57	□□□□□ -0.24
YBX3-218	ENST00000546298	PXDN	Q92626	1479 aa		13.56	□□□□□ -0.24
YBX3-218	ENST00000546298	CDK12	Q9NYV4	1490 aa	Predicted RBP	13.56	□□□□□ -0.24
YBX3-218	ENST00000546298	MINK1	Q8N4C8	1332 aa	Predicted RBP	13.56	□□□□□ -0.24
YBX3-218	ENST00000546298	KNDC1	Q76NI1	1749 aa		13.56	□□□□□ -0.24
YBX3-218	ENST00000546298	ANKAR	Q7Z5J8	1434 aa		13.56	□□□□□ -0.24
YBX3-218	ENST00000546298	WASL	O00401	505 aa	Predicted RBP	13.55	□□□□□ -0.24
YBX3-218	ENST00000546298	HAP1	P54257	671 aa	Predicted RBP	13.55	□□□□□ -0.24
YBX3-218	ENST00000546298	HIRIP3	Q9BW71	556 aa	Predicted RBP	13.55	□□□□□ -0.24
YBX3-218	ENST00000546298	ADGRB1	O14514	1584 aa		13.54	□□□□□ -0.24
YBX3-218	ENST00000546298	LMOD2	Q6P5Q4	547 aa		13.53	□□□□□ -0.24
YBX3-218	ENST00000546298	PMFBP1	Q8TBY8	1022 aa		13.53	□□□□□ -0.24
YBX3-218	ENST00000546298	SBNO1	A3KN83	1393 aa		13.53	□□□□□ -0.24
YBX3-218	ENST00000546298	UPF1	Q92900	1129 aa	Known RBP eCLIP	13.52	□□□□□ -0.25
YBX3-218	ENST00000546298	GPRASP1	Q5JY77	1395 aa		13.52	□□□□□ -0.25
YBX3-218	ENST00000546298	ARHGEF10	O15013	1369 aa		13.51	□□□□□ -0.25
YBX3-218	ENST00000546298	NGDN	Q8NEJ9	315 aa	Known RBP	13.51	□□□□□ -0.25
YBX3-218	ENST00000546298	TNS3	Q68CZ2	1445 aa		13.5	□□□□□ -0.25
YBX3-218	ENST00000546298	PRR36	Q9H6K5	1346 aa		13.49	□□□□□ -0.25
YBX3-218	ENST00000546298	UNC5CL	Q8IV45	518 aa		13.49	□□□□□ -0.25
YBX3-218	ENST00000546298	FMN2	Q9NZ56	1722 aa		13.49	□□□□□ -0.25
YBX3-218	ENST00000546298	ATRN	O75882	1429 aa		13.48	□□□□□ -0.25
YBX3-218	ENST00000546298	KIF1A	Q12756	1690 aa		13.48	□□□□□ -0.25
YBX3-218	ENST00000546298	NUDT16	Q96DE0	195 aa	Known RBP	13.48	□□□□□ -0.25
YBX3-218	ENST00000546298	GJD4	Q96KN9	370 aa	Predicted RBP	13.48	□□□□□ -0.25
YBX3-218	ENST00000546298	COL22A1	Q8NFW1	1626 aa	Predicted RBP	13.47	□□□□□ -0.25
YBX3-218	ENST00000546298	PLEKHG5	O94827	1062 aa		13.47	□□□□□ -0.25
YBX3-218	ENST00000546298	NBPF1	Q3BBV0	1214 aa		13.47	□□□□□ -0.25
YBX3-218	ENST00000546298	CABLES1	Q8TDN4	633 aa		13.47	□□□□□ -0.25
YBX3-218	ENST00000546298	L3MBTL2	Q969R5	705 aa		13.47	□□□□□ -0.25
YBX3-218	ENST00000546298	CDK19	Q9BWU1	502 aa		13.47	□□□□□ -0.25
YBX3-218	ENST00000546298	BCL9L	Q86UU0	1499 aa		13.47	□□□□□ -0.25
YBX3-218	ENST00000546298	RGS12	O14924	1447 aa		13.47	□□□□□ -0.25
YBX3-218	ENST00000546298	ADGRB2	O60241	1585 aa		13.46	□□□□□ -0.25
YBX3-218	ENST00000546298	CCDC61	Q9Y6R9	512 aa		13.46	□□□□□ -0.25
YBX3-218	ENST00000546298	TULP4	Q9NRJ4	1543 aa		13.45	□□□□□ -0.26
YBX3-218	ENST00000546298	PAK3	O75914	559 aa	Predicted RBP	13.45	□□□□□ -0.26
YBX3-218	ENST00000546298	NEUROD1	Q13562	356 aa		13.45	□□□□□ -0.26
YBX3-218	ENST00000546298	ATAD2	Q6PL18	1390 aa		13.45	□□□□□ -0.26
YBX3-218	ENST00000546298	CENPJ	Q9HC77	1338 aa	Predicted RBP	13.44	□□□□□ -0.26
YBX3-218	ENST00000546298	SIN3A	Q96ST3	1273 aa		13.44	□□□□□ -0.26
YBX3-218	ENST00000546298	VPS72	Q15906	364 aa		13.43	□□□□□ -0.26
YBX3-218	ENST00000546298	SLIT2	O94813	1529 aa		13.43	□□□□□ -0.26
YBX3-218	ENST00000546298	PLEKHG3	A1L390	1219 aa		13.42	□□□□□ -0.26
YBX3-218	ENST00000546298	FAM83G	A6ND36	823 aa		13.42	□□□□□ -0.26
YBX3-218	ENST00000546298	SRPK2	P78362	688 aa	Known RBP	13.42	□□□□□ -0.26
YBX3-218	ENST00000546298	CCDC9	Q9Y3X0	531 aa	Known RBP	13.42	□□□□□ -0.26
YBX3-218	ENST00000546298	NBPF8	Q3BBV2	869 aa		13.41	□□□□□ -0.26
YBX3-218	ENST00000546298	CCDC125	Q86Z20	511 aa		13.4	□□□□□ -0.26
YBX3-218	ENST00000546298	ACE	P12821	1306 aa		13.39	□□□□□ -0.27
YBX3-218	ENST00000546298	PRDM11	Q9NQV5	511 aa		13.39	□□□□□ -0.27
YBX3-218	ENST00000546298	ATP7B	P35670	1465 aa		13.39	□□□□□ -0.27
YBX3-218	ENST00000546298	RALGAPB	Q86X10	1494 aa		13.38	□□□□□ -0.27
YBX3-218	ENST00000546298	POLR3A	O14802	1390 aa	Predicted RBP	13.38	□□□□□ -0.27
YBX3-218	ENST00000546298	SEPT12	Q8IYM1	358 aa		13.38	□□□□□ -0.27
YBX3-218	ENST00000546298	BTG4	Q9NY30	223 aa		13.38	□□□□□ -0.27
YBX3-218	ENST00000546298	USP32	Q8NFA0	1604 aa		13.38	□□□□□ -0.27

Retrieved 100 of 20,778 RNA–protein pairs in 97.3 ms