RNA–Protein interactions for RNA: ENST00000545998.1

HMGA2-211, Transcript of high mobility group AT-hook 2, humanhuman

TSL 1 (best)

Gene HMGA2, Length 1,584 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA2-211ENST00000545998 DCCP43146 1447 aa29.22■■■□□ 2.27
HMGA2-211ENST00000545998 FBXO41Q8TF61 875 aa29.22■■■□□ 2.27
HMGA2-211ENST00000545998 POGKQ9P215 609 aa29.18■■■□□ 2.26
HMGA2-211ENST00000545998 ATF3P18847 181 aa29.17■■■□□ 2.26
HMGA2-211ENST00000545998 CADPS2Q86UW7 1296 aa29.17■■■□□ 2.26
HMGA2-211ENST00000545998 SAFB2Q14151 953 aaKnown RBP eCLIP29.16■■■□□ 2.26
HMGA2-211ENST00000545998 CDC42BPGQ6DT37 1551 aa29.15■■■□□ 2.26
HMGA2-211ENST00000545998 CARD11Q9BXL7 1154 aa29.14■■■□□ 2.26
HMGA2-211ENST00000545998 SLAIN2Q9P270 581 aa29.11■■■□□ 2.25
HMGA2-211ENST00000545998 ADGRB2O60241 1585 aa29.11■■■□□ 2.25
HMGA2-211ENST00000545998 PIP4K2BP78356 416 aa29.1■■■□□ 2.25
HMGA2-211ENST00000545998 MST1RQ04912 1400 aa29.1■■■□□ 2.25
HMGA2-211ENST00000545998 CENPJQ9HC77 1338 aaPredicted RBP29.08■■■□□ 2.25
HMGA2-211ENST00000545998 QRICH2Q9H0J4 1663 aa29.08■■■□□ 2.25
HMGA2-211ENST00000545998 MINK1Q8N4C8 1332 aaPredicted RBP29.07■■■□□ 2.24
HMGA2-211ENST00000545998 FMN2Q9NZ56 1722 aa29.07■■■□□ 2.24
HMGA2-211ENST00000545998 EIF3AQ14152 1382 aaKnown RBP29.07■■■□□ 2.24
HMGA2-211ENST00000545998 SCAF1Q9H7N4 1312 aaKnown RBP29.06■■■□□ 2.24
HMGA2-211ENST00000545998 ROBO1Q9Y6N7 1651 aa29.05■■■□□ 2.24
HMGA2-211ENST00000545998 HIRIP3Q9BW71 556 aaPredicted RBP29.05■■■□□ 2.24
HMGA2-211ENST00000545998 C1orf167Q5SNV9 1468 aa29.03■■■□□ 2.24
HMGA2-211ENST00000545998 ILDR1Q86SU0 546 aaPredicted RBP29.01■■■□□ 2.24
HMGA2-211ENST00000545998 WASLO00401 505 aaPredicted RBP28.99■■■□□ 2.23
HMGA2-211ENST00000545998 RGPD8O14715 1765 aaPredicted RBP28.97■■■□□ 2.23
HMGA2-211ENST00000545998 BRINP3Q76B58 766 aa28.96■■■□□ 2.23
HMGA2-211ENST00000545998 USP47Q96K76 1375 aa28.96■■■□□ 2.23
HMGA2-211ENST00000545998 USP32Q8NFA0 1604 aa28.96■■■□□ 2.23
HMGA2-211ENST00000545998 NUTM2FA1L443 756 aa28.96■■■□□ 2.23
HMGA2-211ENST00000545998 TULP4Q9NRJ4 1543 aa28.95■■■□□ 2.22
HMGA2-211ENST00000545998 SBNO2Q9Y2G9 1366 aa28.95■■■□□ 2.22
HMGA2-211ENST00000545998 ANKARQ7Z5J8 1434 aa28.93■■■□□ 2.22
HMGA2-211ENST00000545998 ORAI2Q96SN7 254 aa28.92■■■□□ 2.22
HMGA2-211ENST00000545998 CDK19Q9BWU1 502 aa28.92■■■□□ 2.22
HMGA2-211ENST00000545998 ST20-MTHFSA0A0A6YYL1 179 aa28.92■■■□□ 2.22
HMGA2-211ENST00000545998 ESCO1Q5FWF5 840 aa28.89■■■□□ 2.22
HMGA2-211ENST00000545998 PRR36Q9H6K5 1346 aa28.88■■■□□ 2.21
HMGA2-211ENST00000545998 NHSL1Q5SYE7 1610 aa28.88■■■□□ 2.21
HMGA2-211ENST00000545998 AHDC1Q5TGY3 1603 aaPredicted RBP28.88■■■□□ 2.21
HMGA2-211ENST00000545998 ATP7BP35670 1465 aa28.88■■■□□ 2.21
HMGA2-211ENST00000545998 EVC2Q86UK5 1308 aa28.88■■■□□ 2.21
HMGA2-211ENST00000545998 HSPA1LP34931 641 aa28.88■■■□□ 2.21
HMGA2-211ENST00000545998 TESK2Q96S53 571 aa28.87■■■□□ 2.21
HMGA2-211ENST00000545998 PHLPP1O60346 1717 aa28.86■■■□□ 2.21
HMGA2-211ENST00000545998 KIF1AQ12756 1690 aa28.86■■■□□ 2.21
HMGA2-211ENST00000545998 ITSN1Q15811 1721 aa28.85■■■□□ 2.21
HMGA2-211ENST00000545998 NUDT16Q96DE0 195 aaKnown RBP28.84■■■□□ 2.21
HMGA2-211ENST00000545998 TOPAZ1Q8N9V7 1692 aa28.84■■■□□ 2.21
HMGA2-211ENST00000545998 SRPK2P78362 688 aaKnown RBP28.84■■■□□ 2.21
HMGA2-211ENST00000545998 CABP2Q9NPB3 220 aa28.83■■■□□ 2.21
HMGA2-211ENST00000545998 PHF8Q9UPP1 1060 aa28.81■■■□□ 2.2
HMGA2-211ENST00000545998 COL16A1Q07092 1604 aaPredicted RBP28.8■■■□□ 2.2
HMGA2-211ENST00000545998 EIF4G2P78344 907 aaKnown RBP eCLIP28.8■■■□□ 2.2
HMGA2-211ENST00000545998 DDX17Q92841 729 aaKnown RBP28.8■■■□□ 2.2
HMGA2-211ENST00000545998 SLC24A1O60721 1099 aa28.79■■■□□ 2.2
HMGA2-211ENST00000545998 CCDC61Q9Y6R9 512 aa28.78■■■□□ 2.2
HMGA2-211ENST00000545998 FOXO3O43524 673 aa28.77■■■□□ 2.2
HMGA2-211ENST00000545998 HSPA5P11021 654 aaKnown RBP28.76■■■□□ 2.19
HMGA2-211ENST00000545998 PMFBP1Q8TBY8 1022 aa28.76■■■□□ 2.19
HMGA2-211ENST00000545998 NPHP3Q7Z494 1330 aa28.76■■■□□ 2.19
HMGA2-211ENST00000545998 PXDNQ92626 1479 aa28.74■■■□□ 2.19
HMGA2-211ENST00000545998 SOS2Q07890 1332 aaPredicted RBP28.74■■■□□ 2.19
HMGA2-211ENST00000545998 PPIP5K1Q6PFW1 1433 aa28.73■■■□□ 2.19
HMGA2-211ENST00000545998 DISP3Q9P2K9 1392 aa28.73■■■□□ 2.19
HMGA2-211ENST00000545998 PLEKHG3A1L390 1219 aa28.72■■■□□ 2.19
HMGA2-211ENST00000545998 ATAD2Q6PL18 1390 aa28.72■■■□□ 2.19
HMGA2-211ENST00000545998 TMF1P82094 1093 aa28.71■■■□□ 2.19
HMGA2-211ENST00000545998 PUS7Q96PZ0 661 aaKnown RBP28.71■■■□□ 2.19
HMGA2-211ENST00000545998 POLR3AO14802 1390 aaPredicted RBP28.69■■■□□ 2.18
HMGA2-211ENST00000545998 XPCQ01831 940 aaPredicted RBP28.68■■■□□ 2.18
HMGA2-211ENST00000545998 CABP1Q9NZU7 370 aa28.68■■■□□ 2.18
HMGA2-211ENST00000545998 NGDNQ8NEJ9 315 aaKnown RBP28.67■■■□□ 2.18
HMGA2-211ENST00000545998 PSME1Q06323 249 aa28.67■■■□□ 2.18
HMGA2-211ENST00000545998 KRT28Q7Z3Y7 464 aa28.67■■■□□ 2.18
HMGA2-211ENST00000545998 ACEP12821 1306 aa28.66■■■□□ 2.18
HMGA2-211ENST00000545998 ZEB1P37275 1124 aaPredicted RBP28.66■■■□□ 2.18
HMGA2-211ENST00000545998 LRRC59Q96AG4 307 aaKnown RBP28.66■■■□□ 2.18
HMGA2-211ENST00000545998 TRPM3Q9HCF6 1732 aaPredicted RBP28.64■■■□□ 2.18
HMGA2-211ENST00000545998 SHPRHQ149N8 1683 aa28.64■■■□□ 2.18
HMGA2-211ENST00000545998 JCADQ9P266 1359 aa28.64■■■□□ 2.17
HMGA2-211ENST00000545998 CDCA8Q53HL2 280 aa28.62■■■□□ 2.17
HMGA2-211ENST00000545998 AKAP12Q02952 1782 aa28.61■■■□□ 2.17
HMGA2-211ENST00000545998 SBNO1A3KN83 1393 aa28.61■■■□□ 2.17
HMGA2-211ENST00000545998 SPATA31A3Q5VYP0 1347 aa28.59■■■□□ 2.17
HMGA2-211ENST00000545998 PNPLA6Q8IY17 1366 aa28.58■■■□□ 2.17
HMGA2-211ENST00000545998 NINLQ9Y2I6 1382 aa28.58■■■□□ 2.17
HMGA2-211ENST00000545998 TMC1Q8TDI8 760 aa28.58■■■□□ 2.17
HMGA2-211ENST00000545998 SLC12A5Q9H2X9 1139 aa28.57■■■□□ 2.16
HMGA2-211ENST00000545998 CPSF1Q10570 1443 aaKnown RBP28.57■■■□□ 2.16
HMGA2-211ENST00000545998 TNS3Q68CZ2 1445 aa28.57■■■□□ 2.16
HMGA2-211ENST00000545998 CD163L1Q9NR16 1453 aa28.56■■■□□ 2.16
HMGA2-211ENST00000545998 ALS2Q96Q42 1657 aa28.56■■■□□ 2.16
HMGA2-211ENST00000545998 COL22A1Q8NFW1 1626 aaPredicted RBP28.56■■■□□ 2.16
HMGA2-211ENST00000545998 USP6P35125 1406 aa28.55■■■□□ 2.16
HMGA2-211ENST00000545998 MYOM1P52179 1685 aa28.54■■■□□ 2.16
HMGA2-211ENST00000545998 C11orf95C9JLR9 678 aaPredicted RBP28.54■■■□□ 2.16
HMGA2-211ENST00000545998 ZNF692Q9BU19 519 aaPredicted RBP28.54■■■□□ 2.16
HMGA2-211ENST00000545998 MON2Q7Z3U7 1717 aa28.54■■■□□ 2.16
HMGA2-211ENST00000545998 BRD4O60885 1362 aaPredicted RBP28.52■■■□□ 2.16
HMGA2-211ENST00000545998 SPATA31A6Q5VVP1 1343 aa28.51■■■□□ 2.15
HMGA2-211ENST00000545998 SSH2Q76I76 1423 aa28.51■■■□□ 2.15
Retrieved 100 of 20,778 RNA–protein pairs in 141.6 ms