RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 CHMP3Q9Y3E7 222 aa17.46■□□□□ 0.39
LIMS1-215ENST00000544547 PHF14O94880 888 aa17.46■□□□□ 0.39
LIMS1-215ENST00000544547 ZNF608Q9ULD9 1512 aaPredicted RBP17.45■□□□□ 0.38
LIMS1-215ENST00000544547 SLC12A5Q9H2X9 1139 aa17.45■□□□□ 0.38
LIMS1-215ENST00000544547 DISP3Q9P2K9 1392 aa17.45■□□□□ 0.38
LIMS1-215ENST00000544547 MTHFSP49914 203 aa17.45■□□□□ 0.38
LIMS1-215ENST00000544547 TSR2Q969E8 191 aaKnown RBP17.44■□□□□ 0.38
LIMS1-215ENST00000544547 RUNDC1Q96C34 613 aa17.44■□□□□ 0.38
LIMS1-215ENST00000544547 SSFA2P28290 1259 aa17.43■□□□□ 0.38
LIMS1-215ENST00000544547 C1orf115Q9H7X2 142 aa17.43■□□□□ 0.38
LIMS1-215ENST00000544547 NPHP1O15259 732 aa17.43■□□□□ 0.38
LIMS1-215ENST00000544547 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.43■□□□□ 0.38
LIMS1-215ENST00000544547 GOLGA6L6A8MZA4 724 aa17.43■□□□□ 0.38
LIMS1-215ENST00000544547 K7ELQ4 463 aaPredicted RBP17.43■□□□□ 0.38
LIMS1-215ENST00000544547 NAP1L2Q9ULW6 460 aaPredicted RBP17.42■□□□□ 0.38
LIMS1-215ENST00000544547 TCOF1Q13428 1488 aaKnown RBP17.42■□□□□ 0.38
LIMS1-215ENST00000544547 HDGFL2Q7Z4V5 671 aaPredicted RBP17.42■□□□□ 0.38
LIMS1-215ENST00000544547 GPATCH8Q9UKJ3 1502 aaKnown RBP17.42■□□□□ 0.38
LIMS1-215ENST00000544547 MAGI3Q5TCQ9 1506 aa17.41■□□□□ 0.38
LIMS1-215ENST00000544547 MRC2Q9UBG0 1479 aa17.41■□□□□ 0.38
LIMS1-215ENST00000544547 RTF1Q92541 710 aaKnown RBP17.41■□□□□ 0.38
LIMS1-215ENST00000544547 ARHGAP5Q13017 1502 aa17.41■□□□□ 0.38
LIMS1-215ENST00000544547 SLC4A10Q6U841 1118 aa17.4■□□□□ 0.38
LIMS1-215ENST00000544547 EXOSC9Q06265 439 aaKnown RBP17.4■□□□□ 0.38
LIMS1-215ENST00000544547 SYCE3A1L190 88 aa17.39■□□□□ 0.38
LIMS1-215ENST00000544547 CTTNBP2Q8WZ74 1663 aa17.39■□□□□ 0.37
LIMS1-215ENST00000544547 RILPL2Q969X0 211 aa17.39■□□□□ 0.37
LIMS1-215ENST00000544547 NGEFQ8N5V2 710 aa17.39■□□□□ 0.37
LIMS1-215ENST00000544547 GGNBP2Q9H3C7 697 aa17.39■□□□□ 0.37
LIMS1-215ENST00000544547 NUP153P49790 1475 aaKnown RBP17.39■□□□□ 0.37
LIMS1-215ENST00000544547 TEX14Q8IWB6 1497 aa17.39■□□□□ 0.37
LIMS1-215ENST00000544547 KDM6BO15054 1643 aa17.38■□□□□ 0.37
LIMS1-215ENST00000544547 AAMPQ13685 434 aa17.38■□□□□ 0.37
LIMS1-215ENST00000544547 MVPQ14764 893 aaKnown RBP17.38■□□□□ 0.37
LIMS1-215ENST00000544547 CIZ1Q9ULV3 898 aaPredicted RBP17.38■□□□□ 0.37
LIMS1-215ENST00000544547 PCDHB15Q9Y5E8 787 aa17.38■□□□□ 0.37
LIMS1-215ENST00000544547 IFT140Q96RY7 1462 aa17.38■□□□□ 0.37
LIMS1-215ENST00000544547 WWC1Q8IX03 1113 aa17.38■□□□□ 0.37
LIMS1-215ENST00000544547 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.37■□□□□ 0.37
LIMS1-215ENST00000544547 SYNJ2O15056 1496 aa17.37■□□□□ 0.37
LIMS1-215ENST00000544547 MINK1Q8N4C8 1332 aaPredicted RBP17.37■□□□□ 0.37
LIMS1-215ENST00000544547 LAMC3Q9Y6N6 1575 aa17.37■□□□□ 0.37
LIMS1-215ENST00000544547 CABP2Q9NPB3 220 aa17.37■□□□□ 0.37
LIMS1-215ENST00000544547 KIF16BQ96L93 1317 aa17.37■□□□□ 0.37
LIMS1-215ENST00000544547 LRPPRCP42704 1394 aaKnown RBP17.37■□□□□ 0.37
LIMS1-215ENST00000544547 TULP1O00294 542 aaPredicted RBP17.36■□□□□ 0.37
LIMS1-215ENST00000544547 PER1O15534 1290 aaPredicted RBP17.36■□□□□ 0.37
LIMS1-215ENST00000544547 MAGI1Q96QZ7 1491 aaPredicted RBP17.36■□□□□ 0.37
LIMS1-215ENST00000544547 SPATA31E1Q6ZUB1 1445 aa17.36■□□□□ 0.37
LIMS1-215ENST00000544547 RIPK4P57078 832 aa17.36■□□□□ 0.37
LIMS1-215ENST00000544547 PZPP20742 1482 aa17.36■□□□□ 0.37
LIMS1-215ENST00000544547 CDC45O75419 566 aa17.36■□□□□ 0.37
LIMS1-215ENST00000544547 KDM2BQ8NHM5 1336 aa17.35■□□□□ 0.37
LIMS1-215ENST00000544547 NRDCO43847 1150 aa17.35■□□□□ 0.37
LIMS1-215ENST00000544547 SPC24Q8NBT2 197 aa17.35■□□□□ 0.37
LIMS1-215ENST00000544547 HMGN5P82970 282 aaKnown RBP17.35■□□□□ 0.37
LIMS1-215ENST00000544547 IFT57Q9NWB7 429 aa17.35■□□□□ 0.37
LIMS1-215ENST00000544547 NOB1Q9ULX3 412 aaKnown RBP17.35■□□□□ 0.37
LIMS1-215ENST00000544547 TSPY26PQ9H489 355 aa17.35■□□□□ 0.37
LIMS1-215ENST00000544547 RARSP54136 660 aaKnown RBP17.34■□□□□ 0.37
LIMS1-215ENST00000544547 TNNQ9UQP3 1299 aa17.34■□□□□ 0.37
LIMS1-215ENST00000544547 TERF2IPQ9NYB0 399 aa17.34■□□□□ 0.37
LIMS1-215ENST00000544547 TESK2Q96S53 571 aa17.34■□□□□ 0.37
LIMS1-215ENST00000544547 DIAPH3Q9NSV4 1193 aa17.34■□□□□ 0.37
LIMS1-215ENST00000544547 REC8O95072 547 aa17.33■□□□□ 0.37
LIMS1-215ENST00000544547 NEK4P51957 841 aa17.33■□□□□ 0.37
LIMS1-215ENST00000544547 SPDYE4A6NLX3 237 aa17.33■□□□□ 0.36
LIMS1-215ENST00000544547 ANO2Q9NQ90 1003 aa17.33■□□□□ 0.36
LIMS1-215ENST00000544547 PARD3Q8TEW0 1356 aa17.33■□□□□ 0.36
LIMS1-215ENST00000544547 RBM27Q9P2N5 1060 aaKnown RBP17.33■□□□□ 0.36
LIMS1-215ENST00000544547 RALGAPBQ86X10 1494 aa17.32■□□□□ 0.36
LIMS1-215ENST00000544547 GRIN2AQ12879 1464 aa17.32■□□□□ 0.36
LIMS1-215ENST00000544547 SASS6Q6UVJ0 657 aa17.32■□□□□ 0.36
LIMS1-215ENST00000544547 EVC2Q86UK5 1308 aa17.32■□□□□ 0.36
LIMS1-215ENST00000544547 IGSF3O75054 1194 aa17.31■□□□□ 0.36
LIMS1-215ENST00000544547 INTS3Q68E01 1043 aaKnown RBP17.31■□□□□ 0.36
LIMS1-215ENST00000544547 CHD1LQ86WJ1 897 aa17.31■□□□□ 0.36
LIMS1-215ENST00000544547 KIF3AQ9Y496 699 aa17.31■□□□□ 0.36
LIMS1-215ENST00000544547 MBD3O95983 291 aa17.3■□□□□ 0.36
LIMS1-215ENST00000544547 RABEP1Q15276 862 aa17.3■□□□□ 0.36
LIMS1-215ENST00000544547 SPINK5Q9NQ38 1064 aaPredicted RBP17.3■□□□□ 0.36
LIMS1-215ENST00000544547 NUTM2FA1L443 756 aa17.3■□□□□ 0.36
LIMS1-215ENST00000544547 OFD1O75665 1012 aa17.3■□□□□ 0.36
LIMS1-215ENST00000544547 BAG4O95429 457 aaKnown RBP17.29■□□□□ 0.36
LIMS1-215ENST00000544547 PDCL2Q8N4E4 241 aa17.29■□□□□ 0.36
LIMS1-215ENST00000544547 RBM42Q9BTD8 480 aaKnown RBP17.29■□□□□ 0.36
LIMS1-215ENST00000544547 NKTRP30414 1462 aaKnown RBP17.29■□□□□ 0.36
LIMS1-215ENST00000544547 PLEKHH2Q8IVE3 1493 aa17.29■□□□□ 0.36
LIMS1-215ENST00000544547 CCDC27Q2M243 656 aa17.29■□□□□ 0.36
LIMS1-215ENST00000544547 CCDC141Q6ZP82 1450 aa17.29■□□□□ 0.36
LIMS1-215ENST00000544547 HMOX1P09601 288 aa17.29■□□□□ 0.36
LIMS1-215ENST00000544547 ATF7IPQ6VMQ6 1270 aa17.29■□□□□ 0.36
LIMS1-215ENST00000544547 CGNQ9P2M7 1197 aaKnown RBP17.29■□□□□ 0.36
LIMS1-215ENST00000544547 PLEKHH1Q9ULM0 1364 aa17.28■□□□□ 0.36
LIMS1-215ENST00000544547 HMMRO75330 724 aa17.28■□□□□ 0.36
LIMS1-215ENST00000544547 TMEM57Q8N5G2 664 aa17.27■□□□□ 0.36
LIMS1-215ENST00000544547 ZNF830Q96NB3 372 aaPredicted RBP17.27■□□□□ 0.36
LIMS1-215ENST00000544547 FAM177BA6PVY3 158 aa17.27■□□□□ 0.36
LIMS1-215ENST00000544547 PPP4R3BQ5MIZ7 849 aa17.27■□□□□ 0.36
LIMS1-215ENST00000544547 BBXQ8WY36 941 aaPredicted RBP17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms