RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 RIMBP3Q9UFD9 1639 aa23.69■■□□□ 1.38
VIM-209ENST00000544301 DIP2BQ9P265 1576 aa23.68■■□□□ 1.38
VIM-209ENST00000544301 C20orf194Q5TEA3 1177 aa23.66■■□□□ 1.38
VIM-209ENST00000544301 NGEFQ8N5V2 710 aa23.66■■□□□ 1.38
VIM-209ENST00000544301 CGNL1Q0VF96 1302 aa23.66■■□□□ 1.38
VIM-209ENST00000544301 SHPRHQ149N8 1683 aa23.65■■□□□ 1.38
VIM-209ENST00000544301 SPINK5Q9NQ38 1064 aaPredicted RBP23.65■■□□□ 1.38
VIM-209ENST00000544301 ANKRD36BQ8N2N9 1353 aa23.65■■□□□ 1.38
VIM-209ENST00000544301 TNNT2P45379 298 aaPredicted RBP23.65■■□□□ 1.38
VIM-209ENST00000544301 FBXO31Q5XUX0 539 aaPredicted RBP23.64■■□□□ 1.37
VIM-209ENST00000544301 CABP2Q9NPB3 220 aa23.63■■□□□ 1.37
VIM-209ENST00000544301 TCERG1O14776 1098 aaKnown RBP23.62■■□□□ 1.37
VIM-209ENST00000544301 STK26Q9P289 416 aa23.62■■□□□ 1.37
VIM-209ENST00000544301 E9PSI1 815 aa23.62■■□□□ 1.37
VIM-209ENST00000544301 SAFB2Q14151 953 aaKnown RBP eCLIP23.62■■□□□ 1.37
VIM-209ENST00000544301 NKTRP30414 1462 aaKnown RBP23.61■■□□□ 1.37
VIM-209ENST00000544301 TSPOAP1O95153 1857 aa23.6■■□□□ 1.37
VIM-209ENST00000544301 REREQ9P2R6 1566 aa23.6■■□□□ 1.37
VIM-209ENST00000544301 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.6■■□□□ 1.37
VIM-209ENST00000544301 SENP3Q9H4L4 574 aaPredicted RBP23.6■■□□□ 1.37
VIM-209ENST00000544301 NSD2O96028 1365 aa23.6■■□□□ 1.37
VIM-209ENST00000544301 PTPRMP28827 1452 aa23.59■■□□□ 1.37
VIM-209ENST00000544301 DMRT2Q9Y5R5 561 aa23.59■■□□□ 1.37
VIM-209ENST00000544301 AGLP35573 1532 aa23.58■■□□□ 1.37
VIM-209ENST00000544301 MTHFSP49914 203 aa23.58■■□□□ 1.37
VIM-209ENST00000544301 ERICH6Q7L0X2 663 aa23.57■■□□□ 1.36
VIM-209ENST00000544301 NINLQ9Y2I6 1382 aa23.57■■□□□ 1.36
VIM-209ENST00000544301 WWC1Q8IX03 1113 aa23.56■■□□□ 1.36
VIM-209ENST00000544301 YTHDC2Q9H6S0 1430 aaKnown RBP23.56■■□□□ 1.36
VIM-209ENST00000544301 PPP6R1Q9UPN7 881 aa23.56■■□□□ 1.36
VIM-209ENST00000544301 RUNDC1Q96C34 613 aa23.56■■□□□ 1.36
VIM-209ENST00000544301 MS4A1P11836 297 aa23.54■■□□□ 1.36
VIM-209ENST00000544301 SRPK2P78362 688 aaKnown RBP23.54■■□□□ 1.36
VIM-209ENST00000544301 CFAP53Q96M91 514 aa23.54■■□□□ 1.36
VIM-209ENST00000544301 ALKQ9UM73 1620 aa23.54■■□□□ 1.36
VIM-209ENST00000544301 PRAM1Q96QH2 718 aa23.54■■□□□ 1.36
VIM-209ENST00000544301 A0A1W2PP64 1363 aa23.53■■□□□ 1.36
VIM-209ENST00000544301 IQSEC2Q5JU85 1478 aa23.53■■□□□ 1.36
VIM-209ENST00000544301 ABCC11Q96J66 1382 aa23.52■■□□□ 1.36
VIM-209ENST00000544301 CLTCQ00610 1675 aaKnown RBP23.52■■□□□ 1.36
VIM-209ENST00000544301 MINK1Q8N4C8 1332 aaPredicted RBP23.52■■□□□ 1.36
VIM-209ENST00000544301 POGKQ9P215 609 aa23.51■■□□□ 1.35
VIM-209ENST00000544301 STAG3Q9UJ98 1225 aa23.51■■□□□ 1.35
VIM-209ENST00000544301 KDM2BQ8NHM5 1336 aa23.51■■□□□ 1.35
VIM-209ENST00000544301 ATAD2Q6PL18 1390 aa23.51■■□□□ 1.35
VIM-209ENST00000544301 BCAR3O75815 825 aa23.5■■□□□ 1.35
VIM-209ENST00000544301 ANP32AP39687 249 aaKnown RBP23.5■■□□□ 1.35
VIM-209ENST00000544301 TCP11L2Q8N4U5 519 aa23.5■■□□□ 1.35
VIM-209ENST00000544301 PDE4AP27815 886 aa23.49■■□□□ 1.35
VIM-209ENST00000544301 PHF23Q9BUL5 403 aaPredicted RBP23.49■■□□□ 1.35
VIM-209ENST00000544301 SPATA31D1Q6ZQQ2 1576 aa23.48■■□□□ 1.35
VIM-209ENST00000544301 RRP7AQ9Y3A4 280 aaKnown RBP23.48■■□□□ 1.35
VIM-209ENST00000544301 NEUROD2Q15784 382 aa23.47■■□□□ 1.35
VIM-209ENST00000544301 A2ML1A8K2U0 1454 aa23.47■■□□□ 1.35
VIM-209ENST00000544301 CENPQQ7L2Z9 268 aaPredicted RBP23.47■■□□□ 1.35
VIM-209ENST00000544301 BACH2Q9BYV9 841 aa23.47■■□□□ 1.35
VIM-209ENST00000544301 CD163L1Q9NR16 1453 aa23.46■■□□□ 1.35
VIM-209ENST00000544301 TERF2IPQ9NYB0 399 aa23.46■■□□□ 1.35
VIM-209ENST00000544301 NOP58Q9Y2X3 529 aaKnown RBP23.46■■□□□ 1.35
VIM-209ENST00000544301 IPO9Q96P70 1041 aaKnown RBP23.45■■□□□ 1.35
VIM-209ENST00000544301 SKAP1Q86WV1 359 aa23.44■■□□□ 1.34
VIM-209ENST00000544301 WDR63Q8IWG1 891 aa23.44■■□□□ 1.34
VIM-209ENST00000544301 ARHGEF40Q8TER5 1519 aa23.44■■□□□ 1.34
VIM-209ENST00000544301 CCDC27Q2M243 656 aa23.44■■□□□ 1.34
VIM-209ENST00000544301 GGNBP2Q9H3C7 697 aa23.44■■□□□ 1.34
VIM-209ENST00000544301 CDK19Q9BWU1 502 aa23.43■■□□□ 1.34
VIM-209ENST00000544301 RIMS2Q9UQ26 1411 aa23.42■■□□□ 1.34
VIM-209ENST00000544301 FYB1O15117 783 aa23.42■■□□□ 1.34
VIM-209ENST00000544301 U2AF1L5P0DN76 240 aaPredicted RBP23.42■■□□□ 1.34
VIM-209ENST00000544301 U2AF1Q01081 240 aaKnown RBP eCLIP23.42■■□□□ 1.34
VIM-209ENST00000544301 MLECQ14165 292 aa23.42■■□□□ 1.34
VIM-209ENST00000544301 NCBP3Q53F19 620 aaKnown RBP23.42■■□□□ 1.34
VIM-209ENST00000544301 MED14O60244 1454 aa23.42■■□□□ 1.34
VIM-209ENST00000544301 ANKRD26Q9UPS8 1709 aa23.42■■□□□ 1.34
VIM-209ENST00000544301 NLRP1Q9C000 1473 aa23.41■■□□□ 1.34
VIM-209ENST00000544301 DLC1Q96QB1 1528 aa23.4■■□□□ 1.34
VIM-209ENST00000544301 PAK3O75914 559 aaPredicted RBP23.4■■□□□ 1.34
VIM-209ENST00000544301 PDE3AQ14432 1141 aa23.39■■□□□ 1.34
VIM-209ENST00000544301 SETD1AO15047 1707 aaKnown RBP23.39■■□□□ 1.33
VIM-209ENST00000544301 HDGFL2Q7Z4V5 671 aaPredicted RBP23.39■■□□□ 1.33
VIM-209ENST00000544301 ADGRB2O60241 1585 aa23.39■■□□□ 1.33
VIM-209ENST00000544301 COL3A1P02461 1466 aaPredicted RBP23.39■■□□□ 1.33
VIM-209ENST00000544301 CABP1Q9NZU7 370 aa23.37■■□□□ 1.33
VIM-209ENST00000544301 RARSP54136 660 aaKnown RBP23.35■■□□□ 1.33
VIM-209ENST00000544301 WAPLQ7Z5K2 1190 aa23.35■■□□□ 1.33
VIM-209ENST00000544301 KIF13AQ9H1H9 1805 aa23.34■■□□□ 1.33
VIM-209ENST00000544301 NPM2Q86SE8 214 aaKnown RBP23.33■■□□□ 1.33
VIM-209ENST00000544301 PLEKHF1Q96S99 279 aa23.33■■□□□ 1.33
VIM-209ENST00000544301 CANXP27824 592 aaKnown RBP23.33■■□□□ 1.32
VIM-209ENST00000544301 ZBTB47Q9UFB7 747 aaPredicted RBP23.33■■□□□ 1.32
VIM-209ENST00000544301 U2SURPO15042 1029 aaKnown RBP23.32■■□□□ 1.32
VIM-209ENST00000544301 MYH16Q9H6N6 1097 aa23.32■■□□□ 1.32
VIM-209ENST00000544301 KIF20BQ96Q89 1820 aa23.32■■□□□ 1.32
VIM-209ENST00000544301 NRXN3Q9Y4C0 1643 aa23.31■■□□□ 1.32
VIM-209ENST00000544301 ZMYM3Q14202 1370 aa23.31■■□□□ 1.32
VIM-209ENST00000544301 PANK1Q8TE04 598 aa23.31■■□□□ 1.32
VIM-209ENST00000544301 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.3■■□□□ 1.32
VIM-209ENST00000544301 ATP7BP35670 1465 aa23.29■■□□□ 1.32
VIM-209ENST00000544301 FRAT1Q92837 279 aaPredicted RBP23.29■■□□□ 1.32
VIM-209ENST00000544301 PNPLA6Q8IY17 1366 aa23.29■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms