RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 KDM5CP41229 1560 aa7.68□□□□□ -1.18
CLIP1-217ENST00000543205 DOK7Q18PE1 504 aa7.68□□□□□ -1.18
CLIP1-217ENST00000543205 ZNF710Q8N1W2 664 aa7.68□□□□□ -1.18
CLIP1-217ENST00000543205 ARIH1Q9Y4X5 557 aaPredicted RBP7.68□□□□□ -1.18
CLIP1-217ENST00000543205 ZFYVE16Q7Z3T8 1539 aa7.68□□□□□ -1.18
CLIP1-217ENST00000543205 MLH3Q9UHC1 1453 aa7.67□□□□□ -1.18
CLIP1-217ENST00000543205 DPYSL4O14531 572 aa7.67□□□□□ -1.18
CLIP1-217ENST00000543205 UPF1Q92900 1129 aaKnown RBP eCLIP7.67□□□□□ -1.18
CLIP1-217ENST00000543205 YEATS2Q9ULM3 1422 aa7.67□□□□□ -1.18
CLIP1-217ENST00000543205 ARHGEF5Q12774 1597 aa7.67□□□□□ -1.18
CLIP1-217ENST00000543205 ARID4BQ4LE39 1312 aaPredicted RBP7.66□□□□□ -1.18
CLIP1-217ENST00000543205 ARID3AQ99856 593 aa7.66□□□□□ -1.18
CLIP1-217ENST00000543205 HOXB3P14651 431 aaPredicted RBP7.66□□□□□ -1.18
CLIP1-217ENST00000543205 ITGAEP38570 1179 aa7.66□□□□□ -1.18
CLIP1-217ENST00000543205 RTEL1-TNFRSF6BF6WH68 1400 aa7.66□□□□□ -1.18
CLIP1-217ENST00000543205 ABCC5O15440 1437 aa7.66□□□□□ -1.18
CLIP1-217ENST00000543205 DAPK1P53355 1430 aa7.66□□□□□ -1.18
CLIP1-217ENST00000543205 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP7.65□□□□□ -1.18
CLIP1-217ENST00000543205 ATP10AO60312 1499 aa7.65□□□□□ -1.18
CLIP1-217ENST00000543205 C9orf84Q5VXU9 1444 aa7.65□□□□□ -1.18
CLIP1-217ENST00000543205 RRBP1Q9P2E9 1410 aaKnown RBP7.65□□□□□ -1.18
CLIP1-217ENST00000543205 SEMA3EO15041 775 aa7.65□□□□□ -1.18
CLIP1-217ENST00000543205 CHIC2Q9UKJ5 165 aa7.65□□□□□ -1.18
CLIP1-217ENST00000543205 ATP7AQ04656 1500 aa7.65□□□□□ -1.18
CLIP1-217ENST00000543205 ARHGEF40Q8TER5 1519 aa7.65□□□□□ -1.18
CLIP1-217ENST00000543205 MAP3K9P80192 1104 aa7.64□□□□□ -1.19
CLIP1-217ENST00000543205 LMTK3Q96Q04 1460 aa7.64□□□□□ -1.19
CLIP1-217ENST00000543205 DNMT1P26358 1616 aaKnown RBP7.64□□□□□ -1.19
CLIP1-217ENST00000543205 RIMBP2O15034 1052 aa7.64□□□□□ -1.19
CLIP1-217ENST00000543205 ZNF687Q8N1G0 1237 aa7.63□□□□□ -1.19
CLIP1-217ENST00000543205 RRP7BPQ9NSQ0 103 aa7.63□□□□□ -1.19
CLIP1-217ENST00000543205 SHANK2Q9UPX8 1470 aa7.63□□□□□ -1.19
CLIP1-217ENST00000543205 INO80Q9ULG1 1556 aaPredicted RBP7.63□□□□□ -1.19
CLIP1-217ENST00000543205 KIDINS220Q9ULH0 1771 aa7.63□□□□□ -1.19
CLIP1-217ENST00000543205 DIP2CQ9Y2E4 1556 aa7.63□□□□□ -1.19
CLIP1-217ENST00000543205 ANKRD30AQ9BXX3 1397 aa7.62□□□□□ -1.19
CLIP1-217ENST00000543205 C1orf115Q9H7X2 142 aa7.62□□□□□ -1.19
CLIP1-217ENST00000543205 ABCA6Q8N139 1617 aa7.62□□□□□ -1.19
CLIP1-217ENST00000543205 MAST1Q9Y2H9 1570 aa7.62□□□□□ -1.19
CLIP1-217ENST00000543205 A2MP01023 1474 aa7.62□□□□□ -1.19
CLIP1-217ENST00000543205 MYT1Q01538 1121 aa7.62□□□□□ -1.19
CLIP1-217ENST00000543205 PDIA6Q15084 440 aa7.62□□□□□ -1.19
CLIP1-217ENST00000543205 NEUROD2Q15784 382 aa7.62□□□□□ -1.19
CLIP1-217ENST00000543205 OXER1Q8TDS5 423 aa7.62□□□□□ -1.19
CLIP1-217ENST00000543205 DHX29Q7Z478 1369 aaKnown RBP7.61□□□□□ -1.19
CLIP1-217ENST00000543205 TESPA1A2RU30 521 aaPredicted RBP7.61□□□□□ -1.19
CLIP1-217ENST00000543205 SPDYE16A6NNV3 312 aaPredicted RBP7.61□□□□□ -1.19
CLIP1-217ENST00000543205 MLECQ14165 292 aa7.61□□□□□ -1.19
CLIP1-217ENST00000543205 KIF15Q9NS87 1388 aa7.61□□□□□ -1.19
CLIP1-217ENST00000543205 CROCC2H7BZ55 1655 aa7.61□□□□□ -1.19
CLIP1-217ENST00000543205 LMOD2Q6P5Q4 547 aa7.61□□□□□ -1.19
CLIP1-217ENST00000543205 PTPRKQ15262 1439 aa7.6□□□□□ -1.19
CLIP1-217ENST00000543205 NCOA1Q15788 1441 aa7.6□□□□□ -1.19
CLIP1-217ENST00000543205 REREQ9P2R6 1566 aa7.59□□□□□ -1.19
CLIP1-217ENST00000543205 KIF3BO15066 747 aa7.59□□□□□ -1.19
CLIP1-217ENST00000543205 TBC1D12O60347 775 aa7.59□□□□□ -1.19
CLIP1-217ENST00000543205 VARS2Q5ST30 1063 aaKnown RBP7.59□□□□□ -1.19
CLIP1-217ENST00000543205 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.59□□□□□ -1.19
CLIP1-217ENST00000543205 ADGBQ8N7X0 1667 aa7.59□□□□□ -1.19
CLIP1-217ENST00000543205 ROCK1Q13464 1354 aa7.59□□□□□ -1.19
CLIP1-217ENST00000543205 PLXNC1O60486 1568 aa7.59□□□□□ -1.19
CLIP1-217ENST00000543205 SLC34A2O95436 690 aa7.59□□□□□ -1.19
CLIP1-217ENST00000543205 SMYD5Q6GMV2 418 aa7.59□□□□□ -1.19
CLIP1-217ENST00000543205 GGT6Q6P531 493 aa7.59□□□□□ -1.19
CLIP1-217ENST00000543205 PTCD2Q8WV60 388 aaKnown RBP7.59□□□□□ -1.19
CLIP1-217ENST00000543205 ZMYND15Q9H091 742 aa7.59□□□□□ -1.19
CLIP1-217ENST00000543205 ESF1Q9H501 851 aaKnown RBP7.59□□□□□ -1.19
CLIP1-217ENST00000543205 ZSWIM6Q9HCJ5 1215 aa7.59□□□□□ -1.19
CLIP1-217ENST00000543205 CCDC9Q9Y3X0 531 aaKnown RBP7.59□□□□□ -1.19
CLIP1-217ENST00000543205 ADGRL2O95490 1459 aa7.59□□□□□ -1.19
CLIP1-217ENST00000543205 AGLP35573 1532 aa7.59□□□□□ -1.2
CLIP1-217ENST00000543205 DUOX2Q9NRD8 1548 aa7.59□□□□□ -1.2
CLIP1-217ENST00000543205 ZNF316A6NFI3 1004 aaPredicted RBP7.58□□□□□ -1.2
CLIP1-217ENST00000543205 SOCS7O14512 581 aa7.58□□□□□ -1.2
CLIP1-217ENST00000543205 NECTIN2Q92692 538 aa7.58□□□□□ -1.2
CLIP1-217ENST00000543205 PLA2G2EQ9NZK7 142 aa7.58□□□□□ -1.2
CLIP1-217ENST00000543205 MLLT3P42568 568 aaPredicted RBP7.57□□□□□ -1.2
CLIP1-217ENST00000543205 ERBINQ96RT1 1412 aa7.57□□□□□ -1.2
CLIP1-217ENST00000543205 SIGLEC1Q9BZZ2 1709 aa7.57□□□□□ -1.2
CLIP1-217ENST00000543205 EVI5O60447 810 aa7.56□□□□□ -1.2
CLIP1-217ENST00000543205 RSPH6AQ9H0K4 717 aa7.56□□□□□ -1.2
CLIP1-217ENST00000543205 ANKRD50Q9ULJ7 1429 aa7.56□□□□□ -1.2
CLIP1-217ENST00000543205 BCORL1Q5H9F3 1711 aa7.56□□□□□ -1.2
CLIP1-217ENST00000543205 PCDHGA4Q9Y5G9 962 aa7.56□□□□□ -1.2
CLIP1-217ENST00000543205 EIF5BO60841 1220 aaKnown RBP7.55□□□□□ -1.2
CLIP1-217ENST00000543205 DISP3Q9P2K9 1392 aa7.54□□□□□ -1.2
CLIP1-217ENST00000543205 WASHC2CQ9Y4E1 1318 aa7.54□□□□□ -1.2
CLIP1-217ENST00000543205 GRXCR2A6NFK2 248 aa7.54□□□□□ -1.2
CLIP1-217ENST00000543205 ILDR2Q71H61 639 aa7.54□□□□□ -1.2
CLIP1-217ENST00000543205 EIF2AK4Q9P2K8 1649 aaKnown RBP7.54□□□□□ -1.2
CLIP1-217ENST00000543205 KANK1Q14678 1352 aa7.54□□□□□ -1.2
CLIP1-217ENST00000543205 ADAMTSL3P82987 1691 aa7.53□□□□□ -1.2
CLIP1-217ENST00000543205 HFM1A2PYH4 1435 aa7.53□□□□□ -1.2
CLIP1-217ENST00000543205 NAIPQ13075 1403 aa7.53□□□□□ -1.2
CLIP1-217ENST00000543205 IGSF3O75054 1194 aa7.53□□□□□ -1.2
CLIP1-217ENST00000543205 CNTLNQ9NXG0 1405 aa7.53□□□□□ -1.2
CLIP1-217ENST00000543205 DDX12PQ92771 950 aa7.52□□□□□ -1.2
CLIP1-217ENST00000543205 MADDQ8WXG6 1647 aa7.52□□□□□ -1.2
CLIP1-217ENST00000543205 HCSTQ9UBK5 93 aa7.52□□□□□ -1.21
CLIP1-217ENST00000543205 PTPRMP28827 1452 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms