RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 MINK1Q8N4C8 1332 aaPredicted RBP21.62■■□□□ 1.05
COL4A1-204ENST00000543140 PRAM1Q96QH2 718 aa21.62■■□□□ 1.05
COL4A1-204ENST00000543140 SRPK2P78362 688 aaKnown RBP21.61■■□□□ 1.05
COL4A1-204ENST00000543140 POGKQ9P215 609 aa21.61■■□□□ 1.05
COL4A1-204ENST00000543140 YTHDC2Q9H6S0 1430 aaKnown RBP21.6■■□□□ 1.05
COL4A1-204ENST00000543140 ARHGEF40Q8TER5 1519 aa21.59■■□□□ 1.05
COL4A1-204ENST00000543140 ESF1Q9H501 851 aaKnown RBP21.59■■□□□ 1.05
COL4A1-204ENST00000543140 ALKQ9UM73 1620 aa21.58■■□□□ 1.05
COL4A1-204ENST00000543140 PTPRMP28827 1452 aa21.58■■□□□ 1.05
COL4A1-204ENST00000543140 CGNL1Q0VF96 1302 aa21.58■■□□□ 1.05
COL4A1-204ENST00000543140 APAF1O14727 1248 aa21.58■■□□□ 1.05
COL4A1-204ENST00000543140 PLIN1O60240 522 aa21.57■■□□□ 1.04
COL4A1-204ENST00000543140 EXOC6Q8TAG9 804 aa21.57■■□□□ 1.04
COL4A1-204ENST00000543140 PUS7Q96PZ0 661 aaKnown RBP21.57■■□□□ 1.04
COL4A1-204ENST00000543140 SPATA31D1Q6ZQQ2 1576 aa21.57■■□□□ 1.04
COL4A1-204ENST00000543140 A2ML1A8K2U0 1454 aa21.57■■□□□ 1.04
COL4A1-204ENST00000543140 ANKRD36BQ8N2N9 1353 aa21.56■■□□□ 1.04
COL4A1-204ENST00000543140 ZNF521Q96K83 1311 aa21.55■■□□□ 1.04
COL4A1-204ENST00000543140 GOLGA2Q08379 1002 aa21.55■■□□□ 1.04
COL4A1-204ENST00000543140 POLR3AO14802 1390 aaPredicted RBP21.54■■□□□ 1.04
COL4A1-204ENST00000543140 ZMYM3Q14202 1370 aa21.53■■□□□ 1.04
COL4A1-204ENST00000543140 RIMS2Q9UQ26 1411 aa21.53■■□□□ 1.04
COL4A1-204ENST00000543140 DUSP27Q5VZP5 1158 aa21.53■■□□□ 1.04
COL4A1-204ENST00000543140 MTHFSP49914 203 aa21.53■■□□□ 1.04
COL4A1-204ENST00000543140 USP32Q8NFA0 1604 aa21.52■■□□□ 1.04
COL4A1-204ENST00000543140 A0A1W2PP64 1363 aa21.51■■□□□ 1.03
COL4A1-204ENST00000543140 WAPLQ7Z5K2 1190 aa21.5■■□□□ 1.03
COL4A1-204ENST00000543140 SPINK5Q9NQ38 1064 aaPredicted RBP21.49■■□□□ 1.03
COL4A1-204ENST00000543140 CDK19Q9BWU1 502 aa21.49■■□□□ 1.03
COL4A1-204ENST00000543140 SHPRHQ149N8 1683 aa21.48■■□□□ 1.03
COL4A1-204ENST00000543140 SLFN5Q08AF3 891 aa21.48■■□□□ 1.03
COL4A1-204ENST00000543140 GGNBP2Q9H3C7 697 aa21.47■■□□□ 1.03
COL4A1-204ENST00000543140 ATAD2Q6PL18 1390 aa21.46■■□□□ 1.03
COL4A1-204ENST00000543140 DMRT2Q9Y5R5 561 aa21.46■■□□□ 1.03
COL4A1-204ENST00000543140 NEUROD2Q15784 382 aa21.46■■□□□ 1.03
COL4A1-204ENST00000543140 TERF2IPQ9NYB0 399 aa21.45■■□□□ 1.02
COL4A1-204ENST00000543140 CFAP53Q96M91 514 aa21.45■■□□□ 1.02
COL4A1-204ENST00000543140 NSD2O96028 1365 aa21.44■■□□□ 1.02
COL4A1-204ENST00000543140 NINLQ9Y2I6 1382 aa21.44■■□□□ 1.02
COL4A1-204ENST00000543140 CABP1Q9NZU7 370 aa21.44■■□□□ 1.02
COL4A1-204ENST00000543140 ABCC11Q96J66 1382 aa21.44■■□□□ 1.02
COL4A1-204ENST00000543140 C20orf194Q5TEA3 1177 aa21.44■■□□□ 1.02
COL4A1-204ENST00000543140 CRBNQ96SW2 442 aa21.44■■□□□ 1.02
COL4A1-204ENST00000543140 RRP7AQ9Y3A4 280 aaKnown RBP21.44■■□□□ 1.02
COL4A1-204ENST00000543140 MYT1Q01538 1121 aa21.43■■□□□ 1.02
COL4A1-204ENST00000543140 SETD1AO15047 1707 aaKnown RBP21.43■■□□□ 1.02
COL4A1-204ENST00000543140 CD163L1Q9NR16 1453 aa21.42■■□□□ 1.02
COL4A1-204ENST00000543140 TRMT2AQ8IZ69 625 aaKnown RBP21.42■■□□□ 1.02
COL4A1-204ENST00000543140 FYB1O15117 783 aa21.41■■□□□ 1.02
COL4A1-204ENST00000543140 RUNDC1Q96C34 613 aa21.4■■□□□ 1.02
COL4A1-204ENST00000543140 METP08581 1390 aa21.4■■□□□ 1.02
COL4A1-204ENST00000543140 TNRQ92752 1358 aa21.4■■□□□ 1.02
COL4A1-204ENST00000543140 WWC1Q8IX03 1113 aa21.4■■□□□ 1.02
COL4A1-204ENST00000543140 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.4■■□□□ 1.02
COL4A1-204ENST00000543140 HDGFL2Q7Z4V5 671 aaPredicted RBP21.39■■□□□ 1.02
COL4A1-204ENST00000543140 NRXN3Q9Y4C0 1643 aa21.39■■□□□ 1.02
COL4A1-204ENST00000543140 TXNDC2Q86VQ3 553 aa21.39■■□□□ 1.01
COL4A1-204ENST00000543140 TCP11L2Q8N4U5 519 aa21.39■■□□□ 1.01
COL4A1-204ENST00000543140 E9PSI1 815 aa21.38■■□□□ 1.01
COL4A1-204ENST00000543140 U2AF1L5P0DN76 240 aaPredicted RBP21.38■■□□□ 1.01
COL4A1-204ENST00000543140 U2AF1Q01081 240 aaKnown RBP eCLIP21.38■■□□□ 1.01
COL4A1-204ENST00000543140 PLPPR3Q6T4P5 718 aa21.37■■□□□ 1.01
COL4A1-204ENST00000543140 NGEFQ8N5V2 710 aa21.37■■□□□ 1.01
COL4A1-204ENST00000543140 DLC1Q96QB1 1528 aa21.37■■□□□ 1.01
COL4A1-204ENST00000543140 NKTRP30414 1462 aaKnown RBP21.37■■□□□ 1.01
COL4A1-204ENST00000543140 CEBPAP49715 358 aaPredicted RBP21.36■■□□□ 1.01
COL4A1-204ENST00000543140 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.36■■□□□ 1.01
COL4A1-204ENST00000543140 HDGFP51858 240 aaKnown RBP21.34■■□□□ 1.01
COL4A1-204ENST00000543140 U2SURPO15042 1029 aaKnown RBP21.33■■□□□ 1
COL4A1-204ENST00000543140 BCAR3O75815 825 aa21.33■■□□□ 1
COL4A1-204ENST00000543140 NLRP1Q9C000 1473 aa21.33■■□□□ 1
COL4A1-204ENST00000543140 UBR1Q8IWV7 1749 aa21.32■■□□□ 1
COL4A1-204ENST00000543140 TMEM2Q9UHN6 1383 aa21.32■■□□□ 1
COL4A1-204ENST00000543140 ANKRD26Q9UPS8 1709 aa21.31■■□□□ 1
COL4A1-204ENST00000543140 IQSEC2Q5JU85 1478 aa21.31■■□□□ 1
COL4A1-204ENST00000543140 WASLO00401 505 aaPredicted RBP21.31■■□□□ 1
COL4A1-204ENST00000543140 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.31■■□□□ 1
COL4A1-204ENST00000543140 FBLN1P23142 703 aa21.3■■□□□ 1
COL4A1-204ENST00000543140 NCKAP5LQ9HCH0 1330 aa21.3■■□□□ 1
COL4A1-204ENST00000543140 KIF20BQ96Q89 1820 aa21.29■■□□□ 1
COL4A1-204ENST00000543140 FANCIQ9NVI1 1328 aa21.28■■□□□ 1
COL4A1-204ENST00000543140 MED14O60244 1454 aa21.27■■□□□ 1
COL4A1-204ENST00000543140 LTKP29376 864 aa21.27■■□□□ 1
COL4A1-204ENST00000543140 PPM1GO15355 546 aaPredicted RBP21.27■■□□□ 1
COL4A1-204ENST00000543140 PPIP5K1Q6PFW1 1433 aa21.27■□□□□ 0.99
COL4A1-204ENST00000543140 PHF23Q9BUL5 403 aaPredicted RBP21.26■□□□□ 0.99
COL4A1-204ENST00000543140 MSH5O43196 834 aa21.25■□□□□ 0.99
COL4A1-204ENST00000543140 NUDT16Q96DE0 195 aaKnown RBP21.25■□□□□ 0.99
COL4A1-204ENST00000543140 COL3A1P02461 1466 aaPredicted RBP21.25■□□□□ 0.99
COL4A1-204ENST00000543140 ATP7BP35670 1465 aa21.25■□□□□ 0.99
COL4A1-204ENST00000543140 SKAP1Q86WV1 359 aa21.24■□□□□ 0.99
COL4A1-204ENST00000543140 TRHP20396 242 aaPredicted RBP21.24■□□□□ 0.99
COL4A1-204ENST00000543140 WDR63Q8IWG1 891 aa21.24■□□□□ 0.99
COL4A1-204ENST00000543140 DIAPH1O60610 1272 aaKnown RBP21.23■□□□□ 0.99
COL4A1-204ENST00000543140 CCDC27Q2M243 656 aa21.22■□□□□ 0.99
COL4A1-204ENST00000543140 SLC26A8Q96RN1 970 aa21.22■□□□□ 0.99
COL4A1-204ENST00000543140 FAM135BQ49AJ0 1406 aa21.22■□□□□ 0.99
COL4A1-204ENST00000543140 ADAMTS13Q76LX8 1427 aa21.22■□□□□ 0.99
COL4A1-204ENST00000543140 ROBO2Q9HCK4 1378 aa21.22■□□□□ 0.99
COL4A1-204ENST00000543140 NME9Q86XW9 330 aa21.22■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms