RNA–Protein interactions for RNA: ENST00000541903.6

VPS53-205, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-205ENST00000541903 PTPRUQ92729 1446 aa10.11□□□□□ -0.79
VPS53-205ENST00000541903 CCER2I3L3R5 266 aa10.11□□□□□ -0.79
VPS53-205ENST00000541903 SRPK2P78362 688 aaKnown RBP10.11□□□□□ -0.79
VPS53-205ENST00000541903 WAPLQ7Z5K2 1190 aa10.11□□□□□ -0.79
VPS53-205ENST00000541903 PANK3Q9H999 370 aa10.11□□□□□ -0.79
VPS53-205ENST00000541903 ATAD2Q6PL18 1390 aa10.11□□□□□ -0.79
VPS53-205ENST00000541903 ROBO2Q9HCK4 1378 aa10.11□□□□□ -0.79
VPS53-205ENST00000541903 NINLQ9Y2I6 1382 aa10.11□□□□□ -0.79
VPS53-205ENST00000541903 MYOM1P52179 1685 aa10.1□□□□□ -0.79
VPS53-205ENST00000541903 TMC1Q8TDI8 760 aa10.1□□□□□ -0.79
VPS53-205ENST00000541903 AMOTL2Q9Y2J4 779 aa10.1□□□□□ -0.79
VPS53-205ENST00000541903 NCKAP5LQ9HCH0 1330 aa10.09□□□□□ -0.79
VPS53-205ENST00000541903 PRKRIP1Q9H875 184 aaPredicted RBP10.09□□□□□ -0.79
VPS53-205ENST00000541903 CABP2Q9NPB3 220 aa10.09□□□□□ -0.79
VPS53-205ENST00000541903 XRN1Q8IZH2 1706 aaKnown RBP10.09□□□□□ -0.79
VPS53-205ENST00000541903 KTN1Q86UP2 1357 aaKnown RBP10.09□□□□□ -0.79
VPS53-205ENST00000541903 CDK19Q9BWU1 502 aa10.08□□□□□ -0.8
VPS53-205ENST00000541903 KNSTRNQ9Y448 316 aa10.08□□□□□ -0.8
VPS53-205ENST00000541903 ADGRB2O60241 1585 aa10.08□□□□□ -0.8
VPS53-205ENST00000541903 LMTK3Q96Q04 1460 aa10.07□□□□□ -0.8
VPS53-205ENST00000541903 WASLO00401 505 aaPredicted RBP10.07□□□□□ -0.8
VPS53-205ENST00000541903 CNGB1Q14028 1251 aaPredicted RBP10.07□□□□□ -0.8
VPS53-205ENST00000541903 RALBP1Q15311 655 aa10.07□□□□□ -0.8
VPS53-205ENST00000541903 ANKRD36BQ8N2N9 1353 aa10.06□□□□□ -0.8
VPS53-205ENST00000541903 PER1O15534 1290 aaPredicted RBP10.06□□□□□ -0.8
VPS53-205ENST00000541903 KCNA6P17658 529 aa10.06□□□□□ -0.8
VPS53-205ENST00000541903 HSPA2P54652 639 aa10.05□□□□□ -0.8
VPS53-205ENST00000541903 SLC12A5Q9H2X9 1139 aa10.05□□□□□ -0.8
VPS53-205ENST00000541903 NSD3Q9BZ95 1437 aa10.05□□□□□ -0.8
VPS53-205ENST00000541903 PARD3Q8TEW0 1356 aa10.04□□□□□ -0.8
VPS53-205ENST00000541903 NPC1L1Q9UHC9 1359 aa10.04□□□□□ -0.8
VPS53-205ENST00000541903 CC2D1BQ5T0F9 858 aaKnown RBP10.04□□□□□ -0.8
VPS53-205ENST00000541903 TERF2IPQ9NYB0 399 aa10.04□□□□□ -0.8
VPS53-205ENST00000541903 NWD1Q149M9 1564 aa10.04□□□□□ -0.8
VPS53-205ENST00000541903 MYBBP1AQ9BQG0 1328 aaKnown RBP10.04□□□□□ -0.8
VPS53-205ENST00000541903 ATP7BP35670 1465 aa10.04□□□□□ -0.8
VPS53-205ENST00000541903 HDGFL2Q7Z4V5 671 aaPredicted RBP10.03□□□□□ -0.8
VPS53-205ENST00000541903 YTHDC1Q96MU7 727 aaKnown RBP10.03□□□□□ -0.8
VPS53-205ENST00000541903 A0A1W2PP64 1363 aa10.02□□□□□ -0.8
VPS53-205ENST00000541903 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.02□□□□□ -0.8
VPS53-205ENST00000541903 PPIP5K1Q6PFW1 1433 aa10.02□□□□□ -0.81
VPS53-205ENST00000541903 AMER1Q5JTC6 1135 aaPredicted RBP10.02□□□□□ -0.81
VPS53-205ENST00000541903 NUDT16Q96DE0 195 aaKnown RBP10.02□□□□□ -0.81
VPS53-205ENST00000541903 CARD14Q9BXL6 1004 aa10.02□□□□□ -0.81
VPS53-205ENST00000541903 MRS2Q9HD23 443 aa10.02□□□□□ -0.81
VPS53-205ENST00000541903 NKTRP30414 1462 aaKnown RBP10.02□□□□□ -0.81
VPS53-205ENST00000541903 CGNL1Q0VF96 1302 aa10.02□□□□□ -0.81
VPS53-205ENST00000541903 USP32Q8NFA0 1604 aa10.01□□□□□ -0.81
VPS53-205ENST00000541903 CHD2O14647 1828 aaKnown RBP10.01□□□□□ -0.81
VPS53-205ENST00000541903 CABP1Q9NZU7 370 aa10.01□□□□□ -0.81
VPS53-205ENST00000541903 CCDC61Q9Y6R9 512 aa10.01□□□□□ -0.81
VPS53-205ENST00000541903 NSD2O96028 1365 aa10.01□□□□□ -0.81
VPS53-205ENST00000541903 ANKARQ7Z5J8 1434 aa10□□□□□ -0.81
VPS53-205ENST00000541903 ADGRL3Q9HAR2 1447 aa10□□□□□ -0.81
VPS53-205ENST00000541903 C14orf37Q86TY3 774 aa10□□□□□ -0.81
VPS53-205ENST00000541903 NLRP13Q86W25 1043 aa10□□□□□ -0.81
VPS53-205ENST00000541903 PRR36Q9H6K5 1346 aa10□□□□□ -0.81
VPS53-205ENST00000541903 CDC42BPGQ6DT37 1551 aa10□□□□□ -0.81
VPS53-205ENST00000541903 BRD4O60885 1362 aaPredicted RBP10□□□□□ -0.81
VPS53-205ENST00000541903 CD163L1Q9NR16 1453 aa9.99□□□□□ -0.81
VPS53-205ENST00000541903 PROSER2Q86WR7 435 aaPredicted RBP9.98□□□□□ -0.81
VPS53-205ENST00000541903 TOPAZ1Q8N9V7 1692 aa9.97□□□□□ -0.81
VPS53-205ENST00000541903 NUTM2FA1L443 756 aa9.97□□□□□ -0.81
VPS53-205ENST00000541903 CENPBP07199 599 aaPredicted RBP9.97□□□□□ -0.81
VPS53-205ENST00000541903 CCDC184Q52MB2 194 aa9.97□□□□□ -0.81
VPS53-205ENST00000541903 MORC1Q86VD1 984 aa9.97□□□□□ -0.81
VPS53-205ENST00000541903 CPSF1Q10570 1443 aaKnown RBP9.97□□□□□ -0.81
VPS53-205ENST00000541903 EDC4Q6P2E9 1401 aaKnown RBP9.97□□□□□ -0.81
VPS53-205ENST00000541903 NALCNQ8IZF0 1738 aa9.96□□□□□ -0.81
VPS53-205ENST00000541903 PLEKHG3A1L390 1219 aa9.96□□□□□ -0.82
VPS53-205ENST00000541903 PPP2R1AP30153 589 aa9.96□□□□□ -0.82
VPS53-205ENST00000541903 ZNF692Q9BU19 519 aaPredicted RBP9.96□□□□□ -0.82
VPS53-205ENST00000541903 FMN2Q9NZ56 1722 aa9.96□□□□□ -0.82
VPS53-205ENST00000541903 RBM33Q96EV2 1170 aaKnown RBP9.95□□□□□ -0.82
VPS53-205ENST00000541903 DMRT2Q9Y5R5 561 aa9.95□□□□□ -0.82
VPS53-205ENST00000541903 TMEM94Q12767 1356 aa9.95□□□□□ -0.82
VPS53-205ENST00000541903 NCOA3Q9Y6Q9 1424 aa9.95□□□□□ -0.82
VPS53-205ENST00000541903 ITSN1Q15811 1721 aa9.95□□□□□ -0.82
VPS53-205ENST00000541903 STRCQ7RTU9 1775 aa9.95□□□□□ -0.82
VPS53-205ENST00000541903 ACEP12821 1306 aa9.94□□□□□ -0.82
VPS53-205ENST00000541903 FAM9BQ8IZU0 186 aa9.94□□□□□ -0.82
VPS53-205ENST00000541903 USP6P35125 1406 aa9.93□□□□□ -0.82
VPS53-205ENST00000541903 POLR3AO14802 1390 aaPredicted RBP9.93□□□□□ -0.82
VPS53-205ENST00000541903 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.93□□□□□ -0.82
VPS53-205ENST00000541903 NGDNQ8NEJ9 315 aaKnown RBP9.93□□□□□ -0.82
VPS53-205ENST00000541903 GGNBP2Q9H3C7 697 aa9.93□□□□□ -0.82
VPS53-205ENST00000541903 MON2Q7Z3U7 1717 aa9.93□□□□□ -0.82
VPS53-205ENST00000541903 DCCP43146 1447 aa9.92□□□□□ -0.82
VPS53-205ENST00000541903 FYB1O15117 783 aa9.92□□□□□ -0.82
VPS53-205ENST00000541903 PMFBP1Q8TBY8 1022 aa9.92□□□□□ -0.82
VPS53-205ENST00000541903 C19orf44Q9H6X5 657 aa9.92□□□□□ -0.82
VPS53-205ENST00000541903 AKAP12Q02952 1782 aa9.92□□□□□ -0.82
VPS53-205ENST00000541903 KIF20BQ96Q89 1820 aa9.91□□□□□ -0.82
VPS53-205ENST00000541903 MSH6P52701 1360 aa9.91□□□□□ -0.82
VPS53-205ENST00000541903 ZNF335Q9H4Z2 1342 aaPredicted RBP9.91□□□□□ -0.82
VPS53-205ENST00000541903 ATF3P18847 181 aa9.91□□□□□ -0.82
VPS53-205ENST00000541903 TNNT2P45379 298 aaPredicted RBP9.91□□□□□ -0.82
VPS53-205ENST00000541903 PNISRQ8TF01 805 aaKnown RBP9.91□□□□□ -0.82
VPS53-205ENST00000541903 PHF8Q9UPP1 1060 aa9.91□□□□□ -0.82
VPS53-205ENST00000541903 NRKQ7Z2Y5 1582 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms