RNA–Protein interactions for RNA: ENST00000541764.5

LMO3-227, Transcript of LIM domain only 3, humanhuman

TSL 1 (best)

Gene LMO3, Length 1,489 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-227ENST00000541764 MS4A1P11836 297 aa13.06□□□□□ -0.32
LMO3-227ENST00000541764 RICTORQ6R327 1708 aa13.06□□□□□ -0.32
LMO3-227ENST00000541764 GOLGA2Q08379 1002 aa13.05□□□□□ -0.32
LMO3-227ENST00000541764 NEXMIFQ5QGS0 1516 aa13.05□□□□□ -0.32
LMO3-227ENST00000541764 VGFO15240 615 aaPredicted RBP13.04□□□□□ -0.32
LMO3-227ENST00000541764 SLFN5Q08AF3 891 aa13.04□□□□□ -0.32
LMO3-227ENST00000541764 QRICH2Q9H0J4 1663 aa13.04□□□□□ -0.32
LMO3-227ENST00000541764 SIGLEC1Q9BZZ2 1709 aa13.04□□□□□ -0.32
LMO3-227ENST00000541764 SLC52A1Q9NWF4 448 aa13.04□□□□□ -0.32
LMO3-227ENST00000541764 SALL2Q9Y467 1007 aaPredicted RBP13.04□□□□□ -0.32
LMO3-227ENST00000541764 SENP3-EIF4A1A0A087X0R7 540 aa13.03□□□□□ -0.32
LMO3-227ENST00000541764 GGT6Q6P531 493 aa13.03□□□□□ -0.32
LMO3-227ENST00000541764 NSD2O96028 1365 aa13.03□□□□□ -0.32
LMO3-227ENST00000541764 NINLQ9Y2I6 1382 aa13.02□□□□□ -0.33
LMO3-227ENST00000541764 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.01□□□□□ -0.33
LMO3-227ENST00000541764 REREQ9P2R6 1566 aa13□□□□□ -0.33
LMO3-227ENST00000541764 E9PSI1 815 aa13□□□□□ -0.33
LMO3-227ENST00000541764 ARHGEF28Q8N1W1 1705 aaKnown RBP13□□□□□ -0.33
LMO3-227ENST00000541764 NKTRP30414 1462 aaKnown RBP12.99□□□□□ -0.33
LMO3-227ENST00000541764 NSD3Q9BZ95 1437 aa12.99□□□□□ -0.33
LMO3-227ENST00000541764 ANKRD36BQ8N2N9 1353 aa12.99□□□□□ -0.33
LMO3-227ENST00000541764 EVC2Q86UK5 1308 aa12.98□□□□□ -0.33
LMO3-227ENST00000541764 CRBNQ96SW2 442 aa12.98□□□□□ -0.33
LMO3-227ENST00000541764 TRAK1Q9UPV9 953 aa12.98□□□□□ -0.33
LMO3-227ENST00000541764 KDM2BQ8NHM5 1336 aa12.98□□□□□ -0.33
LMO3-227ENST00000541764 RAPGEF3O95398 923 aa12.97□□□□□ -0.33
LMO3-227ENST00000541764 CHGAP10645 457 aaKnown RBP12.97□□□□□ -0.33
LMO3-227ENST00000541764 TULP4Q9NRJ4 1543 aa12.97□□□□□ -0.33
LMO3-227ENST00000541764 SHPRHQ149N8 1683 aa12.97□□□□□ -0.33
LMO3-227ENST00000541764 CGNL1Q0VF96 1302 aa12.97□□□□□ -0.33
LMO3-227ENST00000541764 ERICH6Q7L0X2 663 aa12.97□□□□□ -0.33
LMO3-227ENST00000541764 AGLP35573 1532 aa12.97□□□□□ -0.33
LMO3-227ENST00000541764 TMEM131LA2VDJ0 1609 aa12.96□□□□□ -0.33
LMO3-227ENST00000541764 APAF1O14727 1248 aa12.96□□□□□ -0.34
LMO3-227ENST00000541764 ANP32AP39687 249 aaKnown RBP12.96□□□□□ -0.34
LMO3-227ENST00000541764 IDI1Q13907 227 aa12.96□□□□□ -0.34
LMO3-227ENST00000541764 IPO9Q96P70 1041 aaKnown RBP12.96□□□□□ -0.34
LMO3-227ENST00000541764 IQSEC2Q5JU85 1478 aa12.96□□□□□ -0.34
LMO3-227ENST00000541764 PREX1Q8TCU6 1659 aa12.96□□□□□ -0.34
LMO3-227ENST00000541764 PLIN1O60240 522 aa12.95□□□□□ -0.34
LMO3-227ENST00000541764 CCDC27Q2M243 656 aa12.95□□□□□ -0.34
LMO3-227ENST00000541764 CENPQQ7L2Z9 268 aaPredicted RBP12.95□□□□□ -0.34
LMO3-227ENST00000541764 MORC1Q86VD1 984 aa12.95□□□□□ -0.34
LMO3-227ENST00000541764 AKT1S1Q96B36 256 aa12.95□□□□□ -0.34
LMO3-227ENST00000541764 BACH2Q9BYV9 841 aa12.95□□□□□ -0.34
LMO3-227ENST00000541764 SLC12A5Q9H2X9 1139 aa12.95□□□□□ -0.34
LMO3-227ENST00000541764 NOP58Q9Y2X3 529 aaKnown RBP12.95□□□□□ -0.34
LMO3-227ENST00000541764 YEATS2Q9ULM3 1422 aa12.95□□□□□ -0.34
LMO3-227ENST00000541764 MED14O60244 1454 aa12.94□□□□□ -0.34
LMO3-227ENST00000541764 CLTCQ00610 1675 aaKnown RBP12.94□□□□□ -0.34
LMO3-227ENST00000541764 PDE4AP27815 886 aa12.93□□□□□ -0.34
LMO3-227ENST00000541764 TMEM132EQ6IEE7 984 aa12.93□□□□□ -0.34
LMO3-227ENST00000541764 RUNDC1Q96C34 613 aa12.93□□□□□ -0.34
LMO3-227ENST00000541764 CFAP65Q6ZU64 1925 aaKnown RBP12.93□□□□□ -0.34
LMO3-227ENST00000541764 WDR63Q8IWG1 891 aa12.92□□□□□ -0.34
LMO3-227ENST00000541764 PIP4P2Q8N4L2 257 aa12.92□□□□□ -0.34
LMO3-227ENST00000541764 ATAD2Q6PL18 1390 aa12.92□□□□□ -0.34
LMO3-227ENST00000541764 ABCC11Q96J66 1382 aa12.92□□□□□ -0.34
LMO3-227ENST00000541764 PTPRMP28827 1452 aa12.92□□□□□ -0.34
LMO3-227ENST00000541764 AAMPQ13685 434 aa12.91□□□□□ -0.34
LMO3-227ENST00000541764 PDE3AQ14432 1141 aa12.91□□□□□ -0.34
LMO3-227ENST00000541764 C20orf194Q5TEA3 1177 aa12.91□□□□□ -0.34
LMO3-227ENST00000541764 WWC1Q8IX03 1113 aa12.91□□□□□ -0.34
LMO3-227ENST00000541764 CCDC146Q8IYE0 955 aa12.91□□□□□ -0.34
LMO3-227ENST00000541764 CFAP53Q96M91 514 aa12.91□□□□□ -0.34
LMO3-227ENST00000541764 HAX1O00165 279 aa12.91□□□□□ -0.34
LMO3-227ENST00000541764 POLA2Q14181 598 aa12.91□□□□□ -0.34
LMO3-227ENST00000541764 DLC1Q96QB1 1528 aa12.89□□□□□ -0.35
LMO3-227ENST00000541764 ADGRB2O60241 1585 aa12.89□□□□□ -0.35
LMO3-227ENST00000541764 DIP2BQ9P265 1576 aa12.89□□□□□ -0.35
LMO3-227ENST00000541764 YTHDC2Q9H6S0 1430 aaKnown RBP12.89□□□□□ -0.35
LMO3-227ENST00000541764 MTHFSP49914 203 aa12.87□□□□□ -0.35
LMO3-227ENST00000541764 SPATA31D1Q6ZQQ2 1576 aa12.87□□□□□ -0.35
LMO3-227ENST00000541764 ALKQ9UM73 1620 aa12.87□□□□□ -0.35
LMO3-227ENST00000541764 CT47B1P0C2W7 299 aaPredicted RBP12.86□□□□□ -0.35
LMO3-227ENST00000541764 ZBTB47Q9UFB7 747 aaPredicted RBP12.86□□□□□ -0.35
LMO3-227ENST00000541764 ANKRD26Q9UPS8 1709 aa12.86□□□□□ -0.35
LMO3-227ENST00000541764 NLRP1Q9C000 1473 aa12.86□□□□□ -0.35
LMO3-227ENST00000541764 MYO5BQ9ULV0 1848 aa12.86□□□□□ -0.35
LMO3-227ENST00000541764 ARHGEF40Q8TER5 1519 aa12.86□□□□□ -0.35
LMO3-227ENST00000541764 A0A1W2PP64 1363 aa12.86□□□□□ -0.35
LMO3-227ENST00000541764 TCP11L2Q8N4U5 519 aa12.85□□□□□ -0.35
LMO3-227ENST00000541764 COL3A1P02461 1466 aaPredicted RBP12.85□□□□□ -0.35
LMO3-227ENST00000541764 CD163L1Q9NR16 1453 aa12.85□□□□□ -0.35
LMO3-227ENST00000541764 TERF2IPQ9NYB0 399 aa12.85□□□□□ -0.35
LMO3-227ENST00000541764 PAK3O75914 559 aaPredicted RBP12.84□□□□□ -0.35
LMO3-227ENST00000541764 CABP2Q9NPB3 220 aa12.84□□□□□ -0.35
LMO3-227ENST00000541764 PNPLA6Q8IY17 1366 aa12.83□□□□□ -0.36
LMO3-227ENST00000541764 BCAR3O75815 825 aa12.83□□□□□ -0.36
LMO3-227ENST00000541764 ZMYM3Q14202 1370 aa12.82□□□□□ -0.36
LMO3-227ENST00000541764 A2ML1A8K2U0 1454 aa12.82□□□□□ -0.36
LMO3-227ENST00000541764 RARSP54136 660 aaKnown RBP12.82□□□□□ -0.36
LMO3-227ENST00000541764 RIMBP3CA6NJZ7 1639 aa12.82□□□□□ -0.36
LMO3-227ENST00000541764 RIMBP3BA6NNM3 1639 aa12.82□□□□□ -0.36
LMO3-227ENST00000541764 RIMBP3Q9UFD9 1639 aa12.82□□□□□ -0.36
LMO3-227ENST00000541764 CDC42BPGQ6DT37 1551 aa12.81□□□□□ -0.36
LMO3-227ENST00000541764 DDRGK1Q96HY6 314 aa12.81□□□□□ -0.36
LMO3-227ENST00000541764 MYH16Q9H6N6 1097 aa12.81□□□□□ -0.36
LMO3-227ENST00000541764 IL16Q14005 1332 aa12.81□□□□□ -0.36
LMO3-227ENST00000541764 ATP7BP35670 1465 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms