RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 YTHDC2Q9H6S0 1430 aaKnown RBP13.22□□□□□ -0.29
DDX55-208ENST00000541259 STRCP1A6NGW2 1772 aa13.2□□□□□ -0.3
DDX55-208ENST00000541259 HSPA5P11021 654 aaKnown RBP13.2□□□□□ -0.3
DDX55-208ENST00000541259 USP47Q96K76 1375 aa13.2□□□□□ -0.3
DDX55-208ENST00000541259 KNDC1Q76NI1 1749 aa13.19□□□□□ -0.3
DDX55-208ENST00000541259 LRPPRCP42704 1394 aaKnown RBP13.19□□□□□ -0.3
DDX55-208ENST00000541259 EIF4G2P78344 907 aaKnown RBP eCLIP13.18□□□□□ -0.3
DDX55-208ENST00000541259 AMOTL2Q9Y2J4 779 aa13.18□□□□□ -0.3
DDX55-208ENST00000541259 XRN1Q8IZH2 1706 aaKnown RBP13.18□□□□□ -0.3
DDX55-208ENST00000541259 ST20-MTHFSA0A0A6YYL1 179 aa13.17□□□□□ -0.3
DDX55-208ENST00000541259 ABCC11Q96J66 1382 aa13.17□□□□□ -0.3
DDX55-208ENST00000541259 QRICH2Q9H0J4 1663 aa13.16□□□□□ -0.3
DDX55-208ENST00000541259 PIK3R4Q99570 1358 aa13.16□□□□□ -0.3
DDX55-208ENST00000541259 CPS1P31327 1500 aa13.15□□□□□ -0.3
DDX55-208ENST00000541259 DLC1Q96QB1 1528 aa13.15□□□□□ -0.3
DDX55-208ENST00000541259 KCNA6P17658 529 aa13.15□□□□□ -0.3
DDX55-208ENST00000541259 WAPLQ7Z5K2 1190 aa13.15□□□□□ -0.3
DDX55-208ENST00000541259 ROBO2Q9HCK4 1378 aa13.15□□□□□ -0.3
DDX55-208ENST00000541259 PLEKHH1Q9ULM0 1364 aa13.15□□□□□ -0.3
DDX55-208ENST00000541259 TECPR2O15040 1411 aa13.14□□□□□ -0.31
DDX55-208ENST00000541259 SAFB2Q14151 953 aaKnown RBP eCLIP13.14□□□□□ -0.31
DDX55-208ENST00000541259 PRAM1Q96QH2 718 aa13.14□□□□□ -0.31
DDX55-208ENST00000541259 NWD1Q149M9 1564 aa13.14□□□□□ -0.31
DDX55-208ENST00000541259 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.13□□□□□ -0.31
DDX55-208ENST00000541259 CENPJQ9HC77 1338 aaPredicted RBP13.13□□□□□ -0.31
DDX55-208ENST00000541259 EIF3AQ14152 1382 aaKnown RBP13.12□□□□□ -0.31
DDX55-208ENST00000541259 SIRT1Q96EB6 747 aa13.12□□□□□ -0.31
DDX55-208ENST00000541259 TESK2Q96S53 571 aa13.12□□□□□ -0.31
DDX55-208ENST00000541259 POGKQ9P215 609 aa13.12□□□□□ -0.31
DDX55-208ENST00000541259 ZNF335Q9H4Z2 1342 aaPredicted RBP13.12□□□□□ -0.31
DDX55-208ENST00000541259 XIRP1Q702N8 1843 aaKnown RBP13.11□□□□□ -0.31
DDX55-208ENST00000541259 C11orf95C9JLR9 678 aaPredicted RBP13.11□□□□□ -0.31
DDX55-208ENST00000541259 RBM33Q96EV2 1170 aaKnown RBP13.11□□□□□ -0.31
DDX55-208ENST00000541259 FAM135BQ49AJ0 1406 aa13.11□□□□□ -0.31
DDX55-208ENST00000541259 PTCH1Q13635 1447 aa13.1□□□□□ -0.31
DDX55-208ENST00000541259 MINK1Q8N4C8 1332 aaPredicted RBP13.1□□□□□ -0.31
DDX55-208ENST00000541259 ZNF316A6NFI3 1004 aaPredicted RBP13.09□□□□□ -0.31
DDX55-208ENST00000541259 NALCNQ8IZF0 1738 aa13.08□□□□□ -0.32
DDX55-208ENST00000541259 PROSER2Q86WR7 435 aaPredicted RBP13.08□□□□□ -0.32
DDX55-208ENST00000541259 DISP3Q9P2K9 1392 aa13.07□□□□□ -0.32
DDX55-208ENST00000541259 NKTRP30414 1462 aaKnown RBP13.06□□□□□ -0.32
DDX55-208ENST00000541259 TULP4Q9NRJ4 1543 aa13.06□□□□□ -0.32
DDX55-208ENST00000541259 RGPD8O14715 1765 aaPredicted RBP13.06□□□□□ -0.32
DDX55-208ENST00000541259 SBNO2Q9Y2G9 1366 aa13.06□□□□□ -0.32
DDX55-208ENST00000541259 SPDYE2BA6NHP3 402 aa13.05□□□□□ -0.32
DDX55-208ENST00000541259 SPDYE6P0CI01 402 aa13.05□□□□□ -0.32
DDX55-208ENST00000541259 SPDYE2Q495Y8 402 aa13.05□□□□□ -0.32
DDX55-208ENST00000541259 ZNF692Q9BU19 519 aaPredicted RBP13.05□□□□□ -0.32
DDX55-208ENST00000541259 LRRC7Q96NW7 1537 aa13.04□□□□□ -0.32
DDX55-208ENST00000541259 LTBP4Q8N2S1 1624 aa13.04□□□□□ -0.32
DDX55-208ENST00000541259 TMF1P82094 1093 aa13.04□□□□□ -0.32
DDX55-208ENST00000541259 WASHC2AQ641Q2 1341 aa13.04□□□□□ -0.32
DDX55-208ENST00000541259 TMEM94Q12767 1356 aa13.04□□□□□ -0.32
DDX55-208ENST00000541259 ADGRB2O60241 1585 aa13.03□□□□□ -0.32
DDX55-208ENST00000541259 POLR3GLQ9BT43 218 aa13.03□□□□□ -0.32
DDX55-208ENST00000541259 CDK19Q9BWU1 502 aa13.03□□□□□ -0.32
DDX55-208ENST00000541259 CABP2Q9NPB3 220 aa13.03□□□□□ -0.32
DDX55-208ENST00000541259 KIF7Q2M1P5 1343 aa13.03□□□□□ -0.32
DDX55-208ENST00000541259 EVC2Q86UK5 1308 aa13.02□□□□□ -0.33
DDX55-208ENST00000541259 CCDC7Q96M83 1385 aa13.02□□□□□ -0.33
DDX55-208ENST00000541259 FMN2Q9NZ56 1722 aa13.02□□□□□ -0.33
DDX55-208ENST00000541259 WASLO00401 505 aaPredicted RBP13.01□□□□□ -0.33
DDX55-208ENST00000541259 C14orf37Q86TY3 774 aa13.01□□□□□ -0.33
DDX55-208ENST00000541259 ADGRL3Q9HAR2 1447 aa13.01□□□□□ -0.33
DDX55-208ENST00000541259 USP32Q8NFA0 1604 aa13□□□□□ -0.33
DDX55-208ENST00000541259 SRPK2P78362 688 aaKnown RBP13□□□□□ -0.33
DDX55-208ENST00000541259 MYOM1P52179 1685 aa12.99□□□□□ -0.33
DDX55-208ENST00000541259 NUTM2FA1L443 756 aa12.99□□□□□ -0.33
DDX55-208ENST00000541259 SLC24A1O60721 1099 aa12.99□□□□□ -0.33
DDX55-208ENST00000541259 CDC42BPGQ6DT37 1551 aa12.98□□□□□ -0.33
DDX55-208ENST00000541259 NCOA3Q9Y6Q9 1424 aa12.98□□□□□ -0.33
DDX55-208ENST00000541259 PRR36Q9H6K5 1346 aa12.98□□□□□ -0.33
DDX55-208ENST00000541259 C19orf44Q9H6X5 657 aa12.98□□□□□ -0.33
DDX55-208ENST00000541259 CDCA8Q53HL2 280 aa12.97□□□□□ -0.33
DDX55-208ENST00000541259 NUDT16Q96DE0 195 aaKnown RBP12.97□□□□□ -0.33
DDX55-208ENST00000541259 DDX10Q13206 875 aaKnown RBP12.96□□□□□ -0.33
DDX55-208ENST00000541259 FBXO3Q9UK99 471 aa12.96□□□□□ -0.33
DDX55-208ENST00000541259 TOPAZ1Q8N9V7 1692 aa12.96□□□□□ -0.34
DDX55-208ENST00000541259 PUS7Q96PZ0 661 aaKnown RBP12.95□□□□□ -0.34
DDX55-208ENST00000541259 SLC12A5Q9H2X9 1139 aa12.95□□□□□ -0.34
DDX55-208ENST00000541259 ITSN1Q15811 1721 aa12.95□□□□□ -0.34
DDX55-208ENST00000541259 ATP7BP35670 1465 aa12.95□□□□□ -0.34
DDX55-208ENST00000541259 MSH6P52701 1360 aa12.94□□□□□ -0.34
DDX55-208ENST00000541259 TMC1Q8TDI8 760 aa12.94□□□□□ -0.34
DDX55-208ENST00000541259 ATF3P18847 181 aa12.93□□□□□ -0.34
DDX55-208ENST00000541259 PROM2Q8N271 834 aa12.93□□□□□ -0.34
DDX55-208ENST00000541259 CABP1Q9NZU7 370 aa12.93□□□□□ -0.34
DDX55-208ENST00000541259 ATAD2Q6PL18 1390 aa12.93□□□□□ -0.34
DDX55-208ENST00000541259 DCCP43146 1447 aa12.92□□□□□ -0.34
DDX55-208ENST00000541259 MST1RQ04912 1400 aa12.92□□□□□ -0.34
DDX55-208ENST00000541259 PPIP5K1Q6PFW1 1433 aa12.92□□□□□ -0.34
DDX55-208ENST00000541259 RBM42Q9BTD8 480 aaKnown RBP12.92□□□□□ -0.34
DDX55-208ENST00000541259 CCDC61Q9Y6R9 512 aa12.92□□□□□ -0.34
DDX55-208ENST00000541259 AKAP12Q02952 1782 aa12.92□□□□□ -0.34
DDX55-208ENST00000541259 ANKARQ7Z5J8 1434 aa12.91□□□□□ -0.34
DDX55-208ENST00000541259 PANK3Q9H999 370 aa12.91□□□□□ -0.34
DDX55-208ENST00000541259 SSUH2Q9Y2M2 353 aa12.91□□□□□ -0.34
DDX55-208ENST00000541259 C1orf167Q5SNV9 1468 aa12.91□□□□□ -0.34
DDX55-208ENST00000541259 CADPS2Q86UW7 1296 aa12.9□□□□□ -0.34
DDX55-208ENST00000541259 PMFBP1Q8TBY8 1022 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms