RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 SHANK2Q9UPX8 1470 aa11.93□□□□□ -0.5
CLIP1-214ENST00000540539 XPCQ01831 940 aaPredicted RBP11.93□□□□□ -0.5
CLIP1-214ENST00000540539 ATP2B3Q16720 1220 aa11.93□□□□□ -0.5
CLIP1-214ENST00000540539 NGEFQ8N5V2 710 aa11.93□□□□□ -0.5
CLIP1-214ENST00000540539 DNAJC2Q99543 621 aaKnown RBP11.93□□□□□ -0.5
CLIP1-214ENST00000540539 C9orf84Q5VXU9 1444 aa11.93□□□□□ -0.5
CLIP1-214ENST00000540539 MYCNP04198 464 aaPredicted RBP11.92□□□□□ -0.5
CLIP1-214ENST00000540539 PSEN1P49768 467 aa11.92□□□□□ -0.5
CLIP1-214ENST00000540539 SOX12O15370 315 aa11.92□□□□□ -0.5
CLIP1-214ENST00000540539 ZNF500O60304 480 aaPredicted RBP11.92□□□□□ -0.5
CLIP1-214ENST00000540539 CRBNQ96SW2 442 aa11.92□□□□□ -0.5
CLIP1-214ENST00000540539 POGZQ7Z3K3 1410 aa11.92□□□□□ -0.5
CLIP1-214ENST00000540539 DENND4BO75064 1496 aaPredicted RBP11.92□□□□□ -0.5
CLIP1-214ENST00000540539 ZNF518AQ6AHZ1 1483 aa11.92□□□□□ -0.5
CLIP1-214ENST00000540539 CCDC7Q96M83 1385 aa11.91□□□□□ -0.5
CLIP1-214ENST00000540539 ADGBQ8N7X0 1667 aa11.91□□□□□ -0.5
CLIP1-214ENST00000540539 IGSF3O75054 1194 aa11.91□□□□□ -0.5
CLIP1-214ENST00000540539 RAPGEF3O95398 923 aa11.91□□□□□ -0.5
CLIP1-214ENST00000540539 KCNJ4P48050 445 aa11.91□□□□□ -0.5
CLIP1-214ENST00000540539 SASS6Q6UVJ0 657 aa11.91□□□□□ -0.5
CLIP1-214ENST00000540539 VIRMAQ69YN4 1812 aaKnown RBP11.91□□□□□ -0.5
CLIP1-214ENST00000540539 RRP7BPQ9NSQ0 103 aa11.9□□□□□ -0.5
CLIP1-214ENST00000540539 SPAG9O60271 1321 aaKnown RBP11.9□□□□□ -0.5
CLIP1-214ENST00000540539 ROCK1Q13464 1354 aa11.9□□□□□ -0.5
CLIP1-214ENST00000540539 NCOA1Q15788 1441 aa11.9□□□□□ -0.5
CLIP1-214ENST00000540539 CHMP4CQ96CF2 233 aa11.9□□□□□ -0.5
CLIP1-214ENST00000540539 RICTORQ6R327 1708 aa11.9□□□□□ -0.5
CLIP1-214ENST00000540539 MAST1Q9Y2H9 1570 aa11.9□□□□□ -0.5
CLIP1-214ENST00000540539 PLIN1O60240 522 aa11.89□□□□□ -0.51
CLIP1-214ENST00000540539 CENPQQ7L2Z9 268 aaPredicted RBP11.89□□□□□ -0.51
CLIP1-214ENST00000540539 ZNF710Q8N1W2 664 aa11.89□□□□□ -0.51
CLIP1-214ENST00000540539 ADGRL2O95490 1459 aa11.89□□□□□ -0.51
CLIP1-214ENST00000540539 CLGNO14967 610 aa11.89□□□□□ -0.51
CLIP1-214ENST00000540539 ANKRD30AQ9BXX3 1397 aa11.89□□□□□ -0.51
CLIP1-214ENST00000540539 KDM5CP41229 1560 aa11.88□□□□□ -0.51
CLIP1-214ENST00000540539 ZBTB9Q96C00 473 aa11.88□□□□□ -0.51
CLIP1-214ENST00000540539 PANK3Q9H999 370 aa11.88□□□□□ -0.51
CLIP1-214ENST00000540539 HFM1A2PYH4 1435 aa11.88□□□□□ -0.51
CLIP1-214ENST00000540539 COL17A1Q9UMD9 1497 aaPredicted RBP11.88□□□□□ -0.51
CLIP1-214ENST00000540539 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.87□□□□□ -0.51
CLIP1-214ENST00000540539 NAIPQ13075 1403 aa11.87□□□□□ -0.51
CLIP1-214ENST00000540539 ZFYVE16Q7Z3T8 1539 aa11.87□□□□□ -0.51
CLIP1-214ENST00000540539 FRMPD1Q5SYB0 1578 aa11.87□□□□□ -0.51
CLIP1-214ENST00000540539 RTEL1-TNFRSF6BF6WH68 1400 aa11.87□□□□□ -0.51
CLIP1-214ENST00000540539 ATP7AQ04656 1500 aa11.87□□□□□ -0.51
CLIP1-214ENST00000540539 NLRP1Q9C000 1473 aa11.87□□□□□ -0.51
CLIP1-214ENST00000540539 INO80Q9ULG1 1556 aaPredicted RBP11.87□□□□□ -0.51
CLIP1-214ENST00000540539 NOL7Q9UMY1 257 aaKnown RBP11.87□□□□□ -0.51
CLIP1-214ENST00000540539 EIF4G2P78344 907 aaKnown RBP eCLIP11.86□□□□□ -0.51
CLIP1-214ENST00000540539 JARID2Q92833 1246 aaPredicted RBP11.86□□□□□ -0.51
CLIP1-214ENST00000540539 GCC2Q8IWJ2 1684 aa11.86□□□□□ -0.51
CLIP1-214ENST00000540539 NASPP49321 788 aaPredicted RBP11.86□□□□□ -0.51
CLIP1-214ENST00000540539 ZNF771Q7L3S4 317 aaPredicted RBP11.86□□□□□ -0.51
CLIP1-214ENST00000540539 TBC1D2Q9BYX2 928 aa11.86□□□□□ -0.51
CLIP1-214ENST00000540539 KIDINS220Q9ULH0 1771 aa11.86□□□□□ -0.51
CLIP1-214ENST00000540539 PLXNC1O60486 1568 aa11.86□□□□□ -0.51
CLIP1-214ENST00000540539 HECW2Q9P2P5 1572 aa11.86□□□□□ -0.51
CLIP1-214ENST00000540539 KIF15Q9NS87 1388 aa11.85□□□□□ -0.51
CLIP1-214ENST00000540539 DDX11L8A8MPP1 907 aa11.85□□□□□ -0.51
CLIP1-214ENST00000540539 CSPP1Q1MSJ5 1256 aa11.85□□□□□ -0.51
CLIP1-214ENST00000540539 MLH3Q9UHC1 1453 aa11.85□□□□□ -0.51
CLIP1-214ENST00000540539 SEC24BO95487 1268 aa11.85□□□□□ -0.51
CLIP1-214ENST00000540539 APPP05067 770 aa11.85□□□□□ -0.51
CLIP1-214ENST00000540539 PNISRQ8TF01 805 aaKnown RBP11.85□□□□□ -0.51
CLIP1-214ENST00000540539 SPDYE4A6NLX3 237 aa11.84□□□□□ -0.51
CLIP1-214ENST00000540539 HSP90B1P14625 803 aaKnown RBP11.84□□□□□ -0.51
CLIP1-214ENST00000540539 HS1BP3Q53T59 392 aa11.84□□□□□ -0.51
CLIP1-214ENST00000540539 TSC1Q92574 1164 aa11.84□□□□□ -0.51
CLIP1-214ENST00000540539 FAM193AP78312 1265 aa11.84□□□□□ -0.51
CLIP1-214ENST00000540539 C20orf194Q5TEA3 1177 aa11.84□□□□□ -0.51
CLIP1-214ENST00000540539 ZMYM4Q5VZL5 1548 aa11.84□□□□□ -0.51
CLIP1-214ENST00000540539 SPRYD3Q8NCJ5 442 aa11.83□□□□□ -0.52
CLIP1-214ENST00000540539 TRIM6-TRIM34B2RNG4 842 aa11.83□□□□□ -0.52
CLIP1-214ENST00000540539 CAPN2P17655 700 aa11.83□□□□□ -0.52
CLIP1-214ENST00000540539 NBPF1Q3BBV0 1214 aa11.83□□□□□ -0.52
CLIP1-214ENST00000540539 MYRIPQ8NFW9 859 aa11.83□□□□□ -0.52
CLIP1-214ENST00000540539 TRIM34Q9BYJ4 488 aa11.83□□□□□ -0.52
CLIP1-214ENST00000540539 KDM6BO15054 1643 aa11.83□□□□□ -0.52
CLIP1-214ENST00000540539 CHMP5Q9NZZ3 219 aa11.82□□□□□ -0.52
CLIP1-214ENST00000540539 ANKRD50Q9ULJ7 1429 aa11.82□□□□□ -0.52
CLIP1-214ENST00000540539 GEMIN8Q9NWZ8 242 aaKnown RBP11.82□□□□□ -0.52
CLIP1-214ENST00000540539 YY1AP1Q9H869 796 aa11.81□□□□□ -0.52
CLIP1-214ENST00000540539 DUOX2Q9NRD8 1548 aa11.81□□□□□ -0.52
CLIP1-214ENST00000540539 ABCA6Q8N139 1617 aa11.81□□□□□ -0.52
CLIP1-214ENST00000540539 ZNF622Q969S3 477 aaKnown RBP eCLIP11.81□□□□□ -0.521e-6■□□□□ 10.8
CLIP1-214ENST00000540539 MAGI2Q86UL8 1455 aa11.8□□□□□ -0.52
CLIP1-214ENST00000540539 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.8□□□□□ -0.52
CLIP1-214ENST00000540539 PRR29P0C7W0 189 aa11.8□□□□□ -0.52
CLIP1-214ENST00000540539 TMED8Q6PL24 325 aaPredicted RBP11.8□□□□□ -0.52
CLIP1-214ENST00000540539 C14orf37Q86TY3 774 aa11.8□□□□□ -0.52
CLIP1-214ENST00000540539 ZKSCAN5Q9Y2L8 839 aa11.8□□□□□ -0.52
CLIP1-214ENST00000540539 YEATS2Q9ULM3 1422 aa11.8□□□□□ -0.52
CLIP1-214ENST00000540539 TULP2O00295 520 aa11.8□□□□□ -0.52
CLIP1-214ENST00000540539 PIAS4Q8N2W9 510 aaPredicted RBP11.8□□□□□ -0.52
CLIP1-214ENST00000540539 DHX29Q7Z478 1369 aaKnown RBP11.8□□□□□ -0.52
CLIP1-214ENST00000540539 PATL2C9JE40 543 aaKnown RBP11.79□□□□□ -0.52
CLIP1-214ENST00000540539 AXDND1Q5T1B0 1012 aaPredicted RBP11.79□□□□□ -0.52
CLIP1-214ENST00000540539 DIP2CQ9Y2E4 1556 aa11.79□□□□□ -0.52
CLIP1-214ENST00000540539 LRPPRCP42704 1394 aaKnown RBP11.79□□□□□ -0.52
CLIP1-214ENST00000540539 TIGD1Q96MW7 591 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 6.6 ms