RNA–Protein interactions for RNA: ENST00000538708.5

PTPRB-204, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

TSL 1 (best) BASIC

Gene PTPRB, Length 5,839 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-204ENST00000538708 APAF1O14727 1248 aa11.64□□□□□ -0.55
PTPRB-204ENST00000538708 CFAP70Q5T0N1 1121 aa11.64□□□□□ -0.55
PTPRB-204ENST00000538708 GAS2L2Q8NHY3 880 aa11.64□□□□□ -0.55
PTPRB-204ENST00000538708 CD109Q6YHK3 1445 aa11.63□□□□□ -0.55
PTPRB-204ENST00000538708 EHBP1L1Q8N3D4 1523 aa11.63□□□□□ -0.55
PTPRB-204ENST00000538708 TRDNQ13061 729 aa11.63□□□□□ -0.55
PTPRB-204ENST00000538708 DNAJC5BQ9UF47 199 aa11.63□□□□□ -0.55
PTPRB-204ENST00000538708 TPD52L1Q16890 204 aaPredicted RBP11.63□□□□□ -0.55
PTPRB-204ENST00000538708 ANO2Q9NQ90 1003 aa11.63□□□□□ -0.55
PTPRB-204ENST00000538708 PES1O00541 588 aaKnown RBP11.62□□□□□ -0.55
PTPRB-204ENST00000538708 LAMC3Q9Y6N6 1575 aa11.62□□□□□ -0.55
PTPRB-204ENST00000538708 IKQ13123 557 aaPredicted RBP11.62□□□□□ -0.55
PTPRB-204ENST00000538708 RTEL1-TNFRSF6BF6WH68 1400 aa11.62□□□□□ -0.55
PTPRB-204ENST00000538708 EFCAB5A4FU69 1503 aa11.62□□□□□ -0.55
PTPRB-204ENST00000538708 FOXD4L5Q5VV16 416 aaPredicted RBP11.62□□□□□ -0.55
PTPRB-204ENST00000538708 FOXD4L4Q8WXT5 416 aaPredicted RBP11.62□□□□□ -0.55
PTPRB-204ENST00000538708 SLC52A1Q9NWF4 448 aa11.61□□□□□ -0.55
PTPRB-204ENST00000538708 DMRT2Q9Y5R5 561 aa11.61□□□□□ -0.55
PTPRB-204ENST00000538708 SYNJ1O43426 1573 aa11.61□□□□□ -0.55
PTPRB-204ENST00000538708 ERBINQ96RT1 1412 aa11.61□□□□□ -0.55
PTPRB-204ENST00000538708 WASHC4Q2M389 1173 aa11.61□□□□□ -0.55
PTPRB-204ENST00000538708 WWC1Q8IX03 1113 aa11.61□□□□□ -0.55
PTPRB-204ENST00000538708 ADAMTS2O95450 1211 aa11.6□□□□□ -0.55
PTPRB-204ENST00000538708 MCTP1Q6DN14 999 aa11.6□□□□□ -0.55
PTPRB-204ENST00000538708 CPLX2Q6PUV4 134 aaKnown RBP11.6□□□□□ -0.55
PTPRB-204ENST00000538708 MSNP26038 577 aaKnown RBP11.6□□□□□ -0.55
PTPRB-204ENST00000538708 MTMR7Q9Y216 660 aa11.6□□□□□ -0.55
PTPRB-204ENST00000538708 TPM2P07951 284 aa11.6□□□□□ -0.55
PTPRB-204ENST00000538708 SLKQ9H2G2 1235 aaPredicted RBP11.6□□□□□ -0.55
PTPRB-204ENST00000538708 HSP90AB4PQ58FF6 505 aa11.59□□□□□ -0.55
PTPRB-204ENST00000538708 ZNF692Q9BU19 519 aaPredicted RBP11.59□□□□□ -0.55
PTPRB-204ENST00000538708 RBM5P52756 815 aaKnown RBP eCLIP11.59□□□□□ -0.55
PTPRB-204ENST00000538708 CCDC30Q5VVM6 783 aa11.59□□□□□ -0.55
PTPRB-204ENST00000538708 CNNM1Q9NRU3 951 aa11.59□□□□□ -0.55
PTPRB-204ENST00000538708 EPRSP07814 1512 aaKnown RBP11.58□□□□□ -0.56
PTPRB-204ENST00000538708 CPLX1O14810 134 aa11.58□□□□□ -0.56
PTPRB-204ENST00000538708 DDX19BQ9UMR2 479 aa11.58□□□□□ -0.56
PTPRB-204ENST00000538708 UBTFL1P0CB47 393 aaPredicted RBP11.58□□□□□ -0.56
PTPRB-204ENST00000538708 SLC4A3P48751 1232 aa11.58□□□□□ -0.56
PTPRB-204ENST00000538708 NAP1L5Q96NT1 182 aaPredicted RBP11.58□□□□□ -0.56
PTPRB-204ENST00000538708 HMGB2P26583 209 aaKnown RBP11.58□□□□□ -0.56
PTPRB-204ENST00000538708 CABP1Q9NZU7 370 aa11.58□□□□□ -0.56
PTPRB-204ENST00000538708 TROQ12816 1431 aaPredicted RBP11.58□□□□□ -0.56
PTPRB-204ENST00000538708 BICDL1Q6ZP65 573 aa11.57□□□□□ -0.56
PTPRB-204ENST00000538708 ERC2O15083 957 aa11.57□□□□□ -0.56
PTPRB-204ENST00000538708 ZKSCAN1P17029 563 aaPredicted RBP11.57□□□□□ -0.56
PTPRB-204ENST00000538708 MTHFSP49914 203 aa11.57□□□□□ -0.56
PTPRB-204ENST00000538708 COG6Q9Y2V7 657 aa11.57□□□□□ -0.56
PTPRB-204ENST00000538708 ERICH3Q5RHP9 1530 aa11.57□□□□□ -0.56
PTPRB-204ENST00000538708 TBC1D2BQ9UPU7 963 aa11.57□□□□□ -0.56
PTPRB-204ENST00000538708 ZC3H6P61129 1189 aaKnown RBP11.56□□□□□ -0.56
PTPRB-204ENST00000538708 DZIP1LQ8IYY4 767 aaKnown RBP11.56□□□□□ -0.56
PTPRB-204ENST00000538708 ZNF530Q6P9A1 599 aaPredicted RBP11.56□□□□□ -0.56
PTPRB-204ENST00000538708 GNL3LQ9NVN8 582 aaKnown RBP11.56□□□□□ -0.56
PTPRB-204ENST00000538708 TOP2BQ02880 1626 aa11.56□□□□□ -0.56
PTPRB-204ENST00000538708 TTC39AQ5SRH9 613 aa11.56□□□□□ -0.56
PTPRB-204ENST00000538708 RNF20Q5VTR2 975 aa11.56□□□□□ -0.56
PTPRB-204ENST00000538708 CCDC47Q96A33 483 aaKnown RBP11.56□□□□□ -0.56
PTPRB-204ENST00000538708 NGLY1Q96IV0 654 aa11.56□□□□□ -0.56
PTPRB-204ENST00000538708 GZF1Q9H116 711 aaPredicted RBP11.55□□□□□ -0.56
PTPRB-204ENST00000538708 IQGAP2Q13576 1575 aa11.55□□□□□ -0.56
PTPRB-204ENST00000538708 SUPT6HQ7KZ85 1726 aaKnown RBP11.54□□□□□ -0.56
PTPRB-204ENST00000538708 ADGRL1O94910 1474 aa11.54□□□□□ -0.56
PTPRB-204ENST00000538708 RPGRIP1LQ68CZ1 1315 aa11.54□□□□□ -0.56
PTPRB-204ENST00000538708 A0A0U1RQG5 324 aaPredicted RBP11.54□□□□□ -0.56
PTPRB-204ENST00000538708 MYL6BP14649 208 aa11.54□□□□□ -0.56
PTPRB-204ENST00000538708 PPP6R1Q9UPN7 881 aa11.54□□□□□ -0.56
PTPRB-204ENST00000538708 AKNAQ7Z591 1439 aa11.54□□□□□ -0.56
PTPRB-204ENST00000538708 KIAA0586Q9BVV6 1533 aa11.54□□□□□ -0.56
PTPRB-204ENST00000538708 KIF14Q15058 1648 aa11.54□□□□□ -0.56
PTPRB-204ENST00000538708 SLC3A2P08195 630 aaKnown RBP11.54□□□□□ -0.56
PTPRB-204ENST00000538708 DNAJC2Q99543 621 aaKnown RBP11.54□□□□□ -0.56
PTPRB-204ENST00000538708 CNTLNQ9NXG0 1405 aa11.53□□□□□ -0.56
PTPRB-204ENST00000538708 PRKAR2BP31323 418 aa11.53□□□□□ -0.56
PTPRB-204ENST00000538708 CEBPAP49715 358 aaPredicted RBP11.53□□□□□ -0.56
PTPRB-204ENST00000538708 RALYLQ86SE5 291 aaKnown RBP11.53□□□□□ -0.56
PTPRB-204ENST00000538708 HFM1A2PYH4 1435 aa11.53□□□□□ -0.56
PTPRB-204ENST00000538708 TMEM132AQ24JP5 1023 aa11.53□□□□□ -0.56
PTPRB-204ENST00000538708 PNISRQ8TF01 805 aaKnown RBP11.53□□□□□ -0.56
PTPRB-204ENST00000538708 CRBNQ96SW2 442 aa11.53□□□□□ -0.56
PTPRB-204ENST00000538708 TPM3P06753 285 aa11.52□□□□□ -0.56
PTPRB-204ENST00000538708 FOSBP53539 338 aa11.52□□□□□ -0.56
PTPRB-204ENST00000538708 TSR1Q2NL82 804 aaKnown RBP11.52□□□□□ -0.56
PTPRB-204ENST00000538708 SULT6B1Q6IMI4 303 aa11.52□□□□□ -0.56
PTPRB-204ENST00000538708 ZNF428Q96B54 188 aa11.52□□□□□ -0.56
PTPRB-204ENST00000538708 ARHGEF11O15085 1522 aa11.52□□□□□ -0.56
PTPRB-204ENST00000538708 CDK13Q14004 1512 aaKnown RBP11.52□□□□□ -0.56
PTPRB-204ENST00000538708 PCMTD1Q96MG8 357 aaPredicted RBP11.52□□□□□ -0.57
PTPRB-204ENST00000538708 PRKRIP1Q9H875 184 aaPredicted RBP11.52□□□□□ -0.57
PTPRB-204ENST00000538708 ATP2B2Q01814 1243 aa11.52□□□□□ -0.57
PTPRB-204ENST00000538708 CENPQQ7L2Z9 268 aaPredicted RBP11.52□□□□□ -0.57
PTPRB-204ENST00000538708 NINLQ9Y2I6 1382 aa11.51□□□□□ -0.57
PTPRB-204ENST00000538708 MAGI1Q96QZ7 1491 aaPredicted RBP11.51□□□□□ -0.57
PTPRB-204ENST00000538708 ZPR1O75312 459 aa11.51□□□□□ -0.57
PTPRB-204ENST00000538708 WWC2Q6AWC2 1192 aa11.51□□□□□ -0.57
PTPRB-204ENST00000538708 BTBD11A6QL63 1104 aa11.51□□□□□ -0.57
PTPRB-204ENST00000538708 PHF14O94880 888 aa11.51□□□□□ -0.57
PTPRB-204ENST00000538708 FOXD4L6Q3SYB3 417 aaPredicted RBP11.51□□□□□ -0.57
PTPRB-204ENST00000538708 CCDC158Q5M9N0 1113 aa11.51□□□□□ -0.57
PTPRB-204ENST00000538708 FOXD4L3Q6VB84 417 aaPredicted RBP11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms