RNA–Protein interactions for RNA: ENST00000536990.5

SYNE1-234, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 3,003 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-234ENST00000536990 VIRMAQ69YN4 1812 aaKnown RBP14.96□□□□□ -0.02
SYNE1-234ENST00000536990 TMEM132EQ6IEE7 984 aa14.95□□□□□ -0.02
SYNE1-234ENST00000536990 POLR3AO14802 1390 aaPredicted RBP14.94□□□□□ -0.02
SYNE1-234ENST00000536990 IGHDP01880 384 aa14.94□□□□□ -0.02
SYNE1-234ENST00000536990 MORC1Q86VD1 984 aa14.94□□□□□ -0.02
SYNE1-234ENST00000536990 SLC12A5Q9H2X9 1139 aa14.94□□□□□ -0.02
SYNE1-234ENST00000536990 QRICH2Q9H0J4 1663 aa14.93□□□□□ -0.02
SYNE1-234ENST00000536990 NSD3Q9BZ95 1437 aa14.93□□□□□ -0.02
SYNE1-234ENST00000536990 PDE3AQ14432 1141 aa14.93□□□□□ -0.02
SYNE1-234ENST00000536990 DAXXQ9UER7 740 aaPredicted RBP14.93□□□□□ -0.02
SYNE1-234ENST00000536990 ABCC3O15438 1527 aa14.93□□□□□ -0.02
SYNE1-234ENST00000536990 ADGRB1O14514 1584 aa14.93□□□□□ -0.02
SYNE1-234ENST00000536990 GSE1Q14687 1217 aa14.92□□□□□ -0.02
SYNE1-234ENST00000536990 SHPRHQ149N8 1683 aa14.92□□□□□ -0.02
SYNE1-234ENST00000536990 ZC3H13Q5T200 1668 aaKnown RBP14.92□□□□□ -0.02
SYNE1-234ENST00000536990 CGNL1Q0VF96 1302 aa14.92□□□□□ -0.02
SYNE1-234ENST00000536990 NINLQ9Y2I6 1382 aa14.92□□□□□ -0.02
SYNE1-234ENST00000536990 WWC1Q8IX03 1113 aa14.92□□□□□ -0.02
SYNE1-234ENST00000536990 RAPGEF3O95398 923 aa14.91□□□□□ -0.02
SYNE1-234ENST00000536990 USP19O94966 1318 aa14.9□□□□□ -0.02
SYNE1-234ENST00000536990 VGFO15240 615 aaPredicted RBP14.9□□□□□ -0.02
SYNE1-234ENST00000536990 TNNT2P45379 298 aaPredicted RBP14.9□□□□□ -0.02
SYNE1-234ENST00000536990 CAMSAP1Q5T5Y3 1602 aa14.9□□□□□ -0.02
SYNE1-234ENST00000536990 NEO1Q92859 1461 aa14.89□□□□□ -0.03
SYNE1-234ENST00000536990 NUTM2DQ5VT03 806 aaPredicted RBP14.89□□□□□ -0.03
SYNE1-234ENST00000536990 CLUAP1Q96AJ1 413 aa14.89□□□□□ -0.03
SYNE1-234ENST00000536990 PANK1Q8TE04 598 aa14.88□□□□□ -0.03
SYNE1-234ENST00000536990 IQSEC2Q5JU85 1478 aa14.88□□□□□ -0.03
SYNE1-234ENST00000536990 SIGLEC1Q9BZZ2 1709 aa14.88□□□□□ -0.03
SYNE1-234ENST00000536990 EVC2Q86UK5 1308 aa14.87□□□□□ -0.03
SYNE1-234ENST00000536990 COG6Q9Y2V7 657 aa14.87□□□□□ -0.03
SYNE1-234ENST00000536990 FRAT1Q92837 279 aaPredicted RBP14.87□□□□□ -0.03
SYNE1-234ENST00000536990 PUS7Q96PZ0 661 aaKnown RBP14.87□□□□□ -0.03
SYNE1-234ENST00000536990 PHF23Q9BUL5 403 aaPredicted RBP14.87□□□□□ -0.03
SYNE1-234ENST00000536990 GLI2P10070 1586 aa14.86□□□□□ -0.03
SYNE1-234ENST00000536990 MAPK8IP3Q9UPT6 1336 aa14.86□□□□□ -0.03
SYNE1-234ENST00000536990 RUNDC1Q96C34 613 aa14.86□□□□□ -0.03
SYNE1-234ENST00000536990 PIK3C2BO00750 1634 aa14.86□□□□□ -0.03
SYNE1-234ENST00000536990 FRAT2O75474 233 aaPredicted RBP14.85□□□□□ -0.03
SYNE1-234ENST00000536990 DIP2CQ9Y2E4 1556 aa14.85□□□□□ -0.03
SYNE1-234ENST00000536990 USP32Q8NFA0 1604 aa14.85□□□□□ -0.03
SYNE1-234ENST00000536990 MTHFSP49914 203 aa14.84□□□□□ -0.03
SYNE1-234ENST00000536990 RARSP54136 660 aaKnown RBP14.84□□□□□ -0.03
SYNE1-234ENST00000536990 NEUROD2Q15784 382 aa14.84□□□□□ -0.03
SYNE1-234ENST00000536990 CFAP53Q96M91 514 aa14.84□□□□□ -0.03
SYNE1-234ENST00000536990 NEXMIFQ5QGS0 1516 aa14.84□□□□□ -0.03
SYNE1-234ENST00000536990 RTN4Q9NQC3 1192 aaKnown RBP14.84□□□□□ -0.03
SYNE1-234ENST00000536990 SEC24BO95487 1268 aa14.84□□□□□ -0.03
SYNE1-234ENST00000536990 IDI1Q13907 227 aa14.84□□□□□ -0.03
SYNE1-234ENST00000536990 NLRP1Q9C000 1473 aa14.84□□□□□ -0.03
SYNE1-234ENST00000536990 ARHGEF28Q8N1W1 1705 aaKnown RBP14.84□□□□□ -0.03
SYNE1-234ENST00000536990 CANXP27824 592 aaKnown RBP14.83□□□□□ -0.04
SYNE1-234ENST00000536990 ARHGAP31Q2M1Z3 1444 aa14.83□□□□□ -0.04
SYNE1-234ENST00000536990 TCP11L2Q8N4U5 519 aa14.83□□□□□ -0.04
SYNE1-234ENST00000536990 BRPF3Q9ULD4 1205 aa14.83□□□□□ -0.04
SYNE1-234ENST00000536990 ANKRD36BQ8N2N9 1353 aa14.82□□□□□ -0.04
SYNE1-234ENST00000536990 SLC52A1Q9NWF4 448 aa14.82□□□□□ -0.04
SYNE1-234ENST00000536990 RRP7AQ9Y3A4 280 aaKnown RBP14.82□□□□□ -0.04
SYNE1-234ENST00000536990 TULP4Q9NRJ4 1543 aa14.82□□□□□ -0.04
SYNE1-234ENST00000536990 AAMPQ13685 434 aa14.82□□□□□ -0.04
SYNE1-234ENST00000536990 WDR63Q8IWG1 891 aa14.82□□□□□ -0.04
SYNE1-234ENST00000536990 CABP2Q9NPB3 220 aa14.82□□□□□ -0.04
SYNE1-234ENST00000536990 RLBP1P12271 317 aa14.81□□□□□ -0.04
SYNE1-234ENST00000536990 SAFB2Q14151 953 aaKnown RBP eCLIP14.81□□□□□ -0.04
SYNE1-234ENST00000536990 NSD2O96028 1365 aa14.81□□□□□ -0.04
SYNE1-234ENST00000536990 PCDHB15Q9Y5E8 787 aa14.8□□□□□ -0.04
SYNE1-234ENST00000536990 CCDC27Q2M243 656 aa14.8□□□□□ -0.04
SYNE1-234ENST00000536990 PMFBP1Q8TBY8 1022 aa14.8□□□□□ -0.04
SYNE1-234ENST00000536990 TNNQ9UQP3 1299 aa14.8□□□□□ -0.04
SYNE1-234ENST00000536990 RICTORQ6R327 1708 aa14.8□□□□□ -0.04
SYNE1-234ENST00000536990 ZMYM3Q14202 1370 aa14.8□□□□□ -0.04
SYNE1-234ENST00000536990 STK26Q9P289 416 aa14.79□□□□□ -0.04
SYNE1-234ENST00000536990 ZFYVE9O95405 1425 aa14.79□□□□□ -0.04
SYNE1-234ENST00000536990 YEATS2Q9ULM3 1422 aa14.78□□□□□ -0.04
SYNE1-234ENST00000536990 SENP3Q9H4L4 574 aaPredicted RBP14.78□□□□□ -0.04
SYNE1-234ENST00000536990 SRPK2P78362 688 aaKnown RBP14.77□□□□□ -0.04
SYNE1-234ENST00000536990 NCBP3Q53F19 620 aaKnown RBP14.77□□□□□ -0.04
SYNE1-234ENST00000536990 ANO8Q9HCE9 1232 aaPredicted RBP14.77□□□□□ -0.04
SYNE1-234ENST00000536990 U2AF1L5P0DN76 240 aaPredicted RBP14.77□□□□□ -0.05
SYNE1-234ENST00000536990 U2AF1Q01081 240 aaKnown RBP eCLIP14.77□□□□□ -0.05
SYNE1-234ENST00000536990 MYO5BQ9ULV0 1848 aa14.76□□□□□ -0.05
SYNE1-234ENST00000536990 PDZRN3Q9UPQ7 1066 aa14.76□□□□□ -0.05
SYNE1-234ENST00000536990 ADGRB2O60241 1585 aa14.75□□□□□ -0.05
SYNE1-234ENST00000536990 BECN1Q14457 450 aa14.75□□□□□ -0.05
SYNE1-234ENST00000536990 BCL2L13Q9BXK5 485 aa14.75□□□□□ -0.05
SYNE1-234ENST00000536990 A0A1W2PP64 1363 aa14.75□□□□□ -0.05
SYNE1-234ENST00000536990 PREX1Q8TCU6 1659 aa14.74□□□□□ -0.05
SYNE1-234ENST00000536990 TBC1D32Q96NH3 1257 aa14.74□□□□□ -0.05
SYNE1-234ENST00000536990 MYH16Q9H6N6 1097 aa14.74□□□□□ -0.05
SYNE1-234ENST00000536990 ANTXR1Q9H6X2 564 aa14.74□□□□□ -0.05
SYNE1-234ENST00000536990 POGKQ9P215 609 aa14.74□□□□□ -0.05
SYNE1-234ENST00000536990 ABCC11Q96J66 1382 aa14.73□□□□□ -0.05
SYNE1-234ENST00000536990 TMEM131LA2VDJ0 1609 aa14.73□□□□□ -0.05
SYNE1-234ENST00000536990 GGNBP2Q9H3C7 697 aa14.73□□□□□ -0.05
SYNE1-234ENST00000536990 RWDD1Q9H446 243 aaPredicted RBP14.73□□□□□ -0.05
SYNE1-234ENST00000536990 MINK1Q8N4C8 1332 aaPredicted RBP14.73□□□□□ -0.05
SYNE1-234ENST00000536990 ATAD2Q6PL18 1390 aa14.72□□□□□ -0.05
SYNE1-234ENST00000536990 PRAM1Q96QH2 718 aa14.72□□□□□ -0.05
SYNE1-234ENST00000536990 TERF2IPQ9NYB0 399 aa14.72□□□□□ -0.05
SYNE1-234ENST00000536990 MVPQ14764 893 aaKnown RBP14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms