RNA–Protein interactions for RNA: ENST00000536634.5

CLIP1-207, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 929 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-207ENST00000536634 S1PR4O95977 384 aa12□□□□□ -0.49
CLIP1-207ENST00000536634 Q3C1V9 767 aa12□□□□□ -0.49
CLIP1-207ENST00000536634 PPP1R18Q6NYC8 613 aa12□□□□□ -0.49
CLIP1-207ENST00000536634 FAM160A2Q8N612 972 aaPredicted RBP12□□□□□ -0.49
CLIP1-207ENST00000536634 RIC3Q7Z5B4 369 aa11.99□□□□□ -0.49
CLIP1-207ENST00000536634 IL27Q8NEV9 243 aa11.99□□□□□ -0.49
CLIP1-207ENST00000536634 LIMD1Q9UGP4 676 aa11.99□□□□□ -0.49
CLIP1-207ENST00000536634 PCDHB15Q9Y5E8 787 aa11.99□□□□□ -0.49
CLIP1-207ENST00000536634 ABCC9O60706 1549 aa11.98□□□□□ -0.49
CLIP1-207ENST00000536634 PRDM9Q9NQV7 894 aa11.98□□□□□ -0.49
CLIP1-207ENST00000536634 SLC6A16Q9GZN6 736 aa11.97□□□□□ -0.49
CLIP1-207ENST00000536634 POLR3EQ9NVU0 708 aa11.97□□□□□ -0.49
CLIP1-207ENST00000536634 GJA5P36382 358 aa11.96□□□□□ -0.49
CLIP1-207ENST00000536634 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.96□□□□□ -0.49
CLIP1-207ENST00000536634 C6orf229H3BNL8 230 aa11.95□□□□□ -0.5
CLIP1-207ENST00000536634 PPEF1O14829 653 aaPredicted RBP11.95□□□□□ -0.5
CLIP1-207ENST00000536634 CSPP1Q1MSJ5 1256 aa11.95□□□□□ -0.5
CLIP1-207ENST00000536634 USB1Q9BQ65 265 aaKnown RBP11.95□□□□□ -0.5
CLIP1-207ENST00000536634 RSPH6AQ9H0K4 717 aa11.95□□□□□ -0.5
CLIP1-207ENST00000536634 RNF223E7ERA6 249 aa11.94□□□□□ -0.5
CLIP1-207ENST00000536634 CLK2P49760 499 aaKnown RBP11.94□□□□□ -0.5
CLIP1-207ENST00000536634 MSS51Q4VC12 460 aa11.94□□□□□ -0.5
CLIP1-207ENST00000536634 SH3D19Q5HYK7 790 aa11.94□□□□□ -0.5
CLIP1-207ENST00000536634 CABLES1Q8TDN4 633 aa11.93□□□□□ -0.5
CLIP1-207ENST00000536634 GGCXP38435 758 aa11.92□□□□□ -0.5
CLIP1-207ENST00000536634 QPCTQ16769 361 aa11.92□□□□□ -0.5
CLIP1-207ENST00000536634 MTMR2Q13614 643 aa11.91□□□□□ -0.5
CLIP1-207ENST00000536634 SKIV2LQ15477 1246 aaKnown RBP11.91□□□□□ -0.5
CLIP1-207ENST00000536634 RETREG3Q86VR2 466 aa11.91□□□□□ -0.5
CLIP1-207ENST00000536634 PROCA1Q8NCQ7 364 aaPredicted RBP11.91□□□□□ -0.5
CLIP1-207ENST00000536634 HRCP23327 699 aa11.9□□□□□ -0.5
CLIP1-207ENST00000536634 TUSC1Q2TAM9 212 aa11.89□□□□□ -0.51
CLIP1-207ENST00000536634 ZBTB3Q9H5J0 574 aa11.89□□□□□ -0.51
CLIP1-207ENST00000536634 FBXO31Q5XUX0 539 aaPredicted RBP11.88□□□□□ -0.51
CLIP1-207ENST00000536634 CFAP99D6REC4 459 aa11.87□□□□□ -0.51
CLIP1-207ENST00000536634 LILRB3O75022 631 aa11.87□□□□□ -0.51
CLIP1-207ENST00000536634 DXOO77932 396 aaKnown RBP11.87□□□□□ -0.51
CLIP1-207ENST00000536634 MMP16P51512 607 aa11.87□□□□□ -0.51
CLIP1-207ENST00000536634 PRPF38BQ5VTL8 546 aaKnown RBP11.87□□□□□ -0.51
CLIP1-207ENST00000536634 ANKLE1Q8NAG6 615 aa11.87□□□□□ -0.51
CLIP1-207ENST00000536634 PRR7Q8TB68 274 aa11.87□□□□□ -0.51
CLIP1-207ENST00000536634 JUNDP17535 347 aa11.86□□□□□ -0.51
CLIP1-207ENST00000536634 PLA2G2CQ5R387 149 aa11.86□□□□□ -0.51
CLIP1-207ENST00000536634 RTL5Q5HYW3 569 aaPredicted RBP11.85□□□□□ -0.51
CLIP1-207ENST00000536634 EMID1Q96A84 441 aaPredicted RBP11.85□□□□□ -0.51
CLIP1-207ENST00000536634 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.85□□□□□ -0.51
CLIP1-207ENST00000536634 FCF1Q9Y324 198 aaKnown RBP11.85□□□□□ -0.51
CLIP1-207ENST00000536634 SPDYE5A6NIY4 337 aa11.84□□□□□ -0.51
CLIP1-207ENST00000536634 NUTM2BA6NNL0 878 aaPredicted RBP11.83□□□□□ -0.52
CLIP1-207ENST00000536634 NUTM2EB1AL46 878 aaPredicted RBP11.83□□□□□ -0.52
CLIP1-207ENST00000536634 NUTM2DQ5VT03 806 aaPredicted RBP11.83□□□□□ -0.52
CLIP1-207ENST00000536634 NUTM2AQ8IVF1 878 aaPredicted RBP11.83□□□□□ -0.52
CLIP1-207ENST00000536634 GOPCQ9HD26 462 aa11.83□□□□□ -0.52
CLIP1-207ENST00000536634 ATP1B4Q9UN42 357 aaPredicted RBP11.82□□□□□ -0.52
CLIP1-207ENST00000536634 Q6ZNB5 142 aa11.81□□□□□ -0.52
CLIP1-207ENST00000536634 PRKD2Q9BZL6 878 aa11.81□□□□□ -0.52
CLIP1-207ENST00000536634 LIAT1Q6ZQX7 453 aa11.79□□□□□ -0.52
CLIP1-207ENST00000536634 PCMTD1Q96MG8 357 aaPredicted RBP11.79□□□□□ -0.52
CLIP1-207ENST00000536634 DESI1Q6ICB0 168 aa11.78□□□□□ -0.52
CLIP1-207ENST00000536634 PPP2R2DQ66LE6 453 aa11.77□□□□□ -0.53
CLIP1-207ENST00000536634 TSC1Q92574 1164 aa11.77□□□□□ -0.53
CLIP1-207ENST00000536634 SLC19A1P41440 591 aa11.76□□□□□ -0.53
CLIP1-207ENST00000536634 CCDC24Q8N4L8 307 aa11.76□□□□□ -0.53
CLIP1-207ENST00000536634 NUDT12Q9BQG2 462 aa11.76□□□□□ -0.53
CLIP1-207ENST00000536634 PER1O15534 1290 aaPredicted RBP11.75□□□□□ -0.53
CLIP1-207ENST00000536634 PTPRNQ16849 979 aa11.75□□□□□ -0.53
CLIP1-207ENST00000536634 V9GY48 417 aaPredicted RBP11.75□□□□□ -0.53
CLIP1-207ENST00000536634 LYPD8Q6UX82 237 aa11.74□□□□□ -0.53
CLIP1-207ENST00000536634 CCNYL3P0C7X3 344 aa11.73□□□□□ -0.53
CLIP1-207ENST00000536634 PTCRAQ6ISU1 281 aaPredicted RBP11.73□□□□□ -0.53
CLIP1-207ENST00000536634 RFC5P40937 340 aa11.72□□□□□ -0.53
CLIP1-207ENST00000536634 SPRYD7Q5W111 196 aa11.71□□□□□ -0.53
CLIP1-207ENST00000536634 HELBQ8NG08 1087 aaPredicted RBP11.71□□□□□ -0.53
CLIP1-207ENST00000536634 RPIAP49247 311 aa11.7□□□□□ -0.54
CLIP1-207ENST00000536634 CTDSPL2Q05D32 466 aa11.7□□□□□ -0.54
CLIP1-207ENST00000536634 EVA1BQ9NVM1 165 aa11.7□□□□□ -0.54
CLIP1-207ENST00000536634 MAP10Q9P2G4 905 aa11.69□□□□□ -0.54
CLIP1-207ENST00000536634 AP1G2O75843 785 aa11.68□□□□□ -0.54
CLIP1-207ENST00000536634 F12P00748 615 aaPredicted RBP11.68□□□□□ -0.54
CLIP1-207ENST00000536634 KCNH2Q12809 1159 aa11.68□□□□□ -0.54
CLIP1-207ENST00000536634 ZBTB24O43167 697 aaPredicted RBP11.67□□□□□ -0.54
CLIP1-207ENST00000536634 TRIM32Q13049 653 aa11.67□□□□□ -0.54
CLIP1-207ENST00000536634 CTHP32929 405 aa11.66□□□□□ -0.54
CLIP1-207ENST00000536634 ZNF697Q5TEC3 545 aa11.66□□□□□ -0.54
CLIP1-207ENST00000536634 ZNF598Q86UK7 904 aaKnown RBP11.66□□□□□ -0.54
CLIP1-207ENST00000536634 LRRN4Q8WUT4 740 aa11.66□□□□□ -0.54
CLIP1-207ENST00000536634 UNC93B1Q9H1C4 597 aa11.66□□□□□ -0.54
CLIP1-207ENST00000536634 CCDC180Q9P1Z9 1646 aa11.64□□□□□ -0.55
CLIP1-207ENST00000536634 CD2BP2O95400 341 aaKnown RBP11.63□□□□□ -0.55
CLIP1-207ENST00000536634 USP17L8P0C7I0 530 aa11.63□□□□□ -0.55
CLIP1-207ENST00000536634 LAPTM4AQ15012 233 aa11.63□□□□□ -0.55
CLIP1-207ENST00000536634 TRIM67Q6ZTA4 783 aa11.63□□□□□ -0.55
CLIP1-207ENST00000536634 SKOR1P84550 965 aa11.61□□□□□ -0.55
CLIP1-207ENST00000536634 HMX1Q9NP08 348 aaPredicted RBP11.61□□□□□ -0.55
CLIP1-207ENST00000536634 TMEM259Q4ZIN3 620 aa11.6□□□□□ -0.55
CLIP1-207ENST00000536634 PKD2L1Q9P0L9 805 aa11.6□□□□□ -0.55
CLIP1-207ENST00000536634 LCE2BO14633 110 aa11.59□□□□□ -0.55
CLIP1-207ENST00000536634 TMEM132AQ24JP5 1023 aa11.59□□□□□ -0.55
CLIP1-207ENST00000536634 LINC01559Q495D7 138 aa11.59□□□□□ -0.55
CLIP1-207ENST00000536634 TRAF7Q6Q0C0 670 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms