RNA–Protein interactions for RNA: ENST00000533957.1

CLNS1A-212, Transcript of chloride nucleotide-sensitive channel 1A, humanhuman

TSL 4

Gene CLNS1A, Length 369 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLNS1A-212ENST00000533957 PRDM9Q9NQV7 894 aa9.96□□□□□ -0.82
CLNS1A-212ENST00000533957 PKD2L1Q9P0L9 805 aa9.96□□□□□ -0.82
CLNS1A-212ENST00000533957 Q3C1V9 767 aa9.95□□□□□ -0.82
CLNS1A-212ENST00000533957 MSS51Q4VC12 460 aa9.95□□□□□ -0.82
CLNS1A-212ENST00000533957 FOXC1Q12948 553 aa9.94□□□□□ -0.82
CLNS1A-212ENST00000533957 CCDC102AQ96A19 550 aa9.94□□□□□ -0.82
CLNS1A-212ENST00000533957 FAM187AA6NFU0 413 aa9.93□□□□□ -0.82
CLNS1A-212ENST00000533957 LMOD2Q6P5Q4 547 aa9.93□□□□□ -0.82
CLNS1A-212ENST00000533957 USP46P62068 366 aa9.91□□□□□ -0.82
CLNS1A-212ENST00000533957 ZBTB24O43167 697 aaPredicted RBP9.9□□□□□ -0.82
CLNS1A-212ENST00000533957 CLCN1P35523 988 aa9.9□□□□□ -0.82
CLNS1A-212ENST00000533957 MMP16P51512 607 aa9.9□□□□□ -0.82
CLNS1A-212ENST00000533957 USB1Q9BQ65 265 aaKnown RBP9.9□□□□□ -0.82
CLNS1A-212ENST00000533957 GPCPD1Q9NPB8 672 aa9.9□□□□□ -0.82
CLNS1A-212ENST00000533957 BICRAQ9NZM4 1560 aa9.89□□□□□ -0.83
CLNS1A-212ENST00000533957 HLA-CQ95604 372 aa9.89□□□□□ -0.83
CLNS1A-212ENST00000533957 FAM217BQ9NTX9 383 aaPredicted RBP9.89□□□□□ -0.83
CLNS1A-212ENST00000533957 TOR4AQ9NXH8 423 aa9.88□□□□□ -0.83
CLNS1A-212ENST00000533957 SCRIBQ14160 1630 aa9.88□□□□□ -0.83
CLNS1A-212ENST00000533957 HOXA2O43364 376 aa9.87□□□□□ -0.83
CLNS1A-212ENST00000533957 KRI1Q8N9T8 703 aaKnown RBP9.87□□□□□ -0.83
CLNS1A-212ENST00000533957 POTECB2RU33 542 aa9.86□□□□□ -0.83
CLNS1A-212ENST00000533957 AAASQ9NRG9 546 aa9.86□□□□□ -0.83
CLNS1A-212ENST00000533957 DXOO77932 396 aaKnown RBP9.85□□□□□ -0.83
CLNS1A-212ENST00000533957 CYP4X1Q8N118 509 aa9.85□□□□□ -0.83
CLNS1A-212ENST00000533957 ZNF775Q96BV0 537 aaPredicted RBP9.85□□□□□ -0.83
CLNS1A-212ENST00000533957 REPIN1Q9BWE0 567 aaKnown RBP9.85□□□□□ -0.83
CLNS1A-212ENST00000533957 ST8SIA5O15466 376 aa9.84□□□□□ -0.83
CLNS1A-212ENST00000533957 GUCA2AQ02747 115 aa9.84□□□□□ -0.83
CLNS1A-212ENST00000533957 BARGINQ6ZT62 677 aa9.83□□□□□ -0.84
CLNS1A-212ENST00000533957 NUTM1Q86Y26 1132 aa9.83□□□□□ -0.84
CLNS1A-212ENST00000533957 AVPP01185 164 aa9.82□□□□□ -0.84
CLNS1A-212ENST00000533957 SSTR3P32745 418 aaPredicted RBP9.82□□□□□ -0.84
CLNS1A-212ENST00000533957 TRIM32Q13049 653 aa9.82□□□□□ -0.84
CLNS1A-212ENST00000533957 SYMPKQ92797 1274 aaKnown RBP9.82□□□□□ -0.84
CLNS1A-212ENST00000533957 WNT7AO00755 349 aa9.81□□□□□ -0.84
CLNS1A-212ENST00000533957 ZMYND10O75800 440 aa9.81□□□□□ -0.84
CLNS1A-212ENST00000533957 CCDC24Q8N4L8 307 aa9.81□□□□□ -0.84
CLNS1A-212ENST00000533957 TTC24A2A3L6 582 aaPredicted RBP9.8□□□□□ -0.84
CLNS1A-212ENST00000533957 CRIPAKQ8N1N5 446 aa9.8□□□□□ -0.84
CLNS1A-212ENST00000533957 SHROOM4Q9ULL8 1493 aa9.79□□□□□ -0.84
CLNS1A-212ENST00000533957 SNIP1Q8TAD8 396 aaKnown RBP9.79□□□□□ -0.84
CLNS1A-212ENST00000533957 ZC3H15Q8WU90 426 aaKnown RBP9.78□□□□□ -0.84
CLNS1A-212ENST00000533957 DACH1Q9UI36 760 aa9.78□□□□□ -0.84
CLNS1A-212ENST00000533957 PCDHGC3Q9UN70 934 aa9.78□□□□□ -0.84
CLNS1A-212ENST00000533957 AXIN1O15169 862 aa9.77□□□□□ -0.85
CLNS1A-212ENST00000533957 FDX1P10109 184 aa9.77□□□□□ -0.85
CLNS1A-212ENST00000533957 JUNDP17535 347 aa9.77□□□□□ -0.85
CLNS1A-212ENST00000533957 MRGPRX2Q96LB1 330 aa9.77□□□□□ -0.85
CLNS1A-212ENST00000533957 CTC1Q2NKJ3 1217 aa9.76□□□□□ -0.85
CLNS1A-212ENST00000533957 RETREG3Q86VR2 466 aa9.76□□□□□ -0.85
CLNS1A-212ENST00000533957 SPIRE2Q8WWL2 714 aa9.76□□□□□ -0.85
CLNS1A-212ENST00000533957 SMPD1P17405 629 aa9.75□□□□□ -0.85
CLNS1A-212ENST00000533957 SMCPP49901 116 aaPredicted RBP9.75□□□□□ -0.85
CLNS1A-212ENST00000533957 AMHR2Q16671 573 aa9.75□□□□□ -0.85
CLNS1A-212ENST00000533957 TTLL12Q14166 644 aaPredicted RBP9.74□□□□□ -0.85
CLNS1A-212ENST00000533957 RC3H1Q5TC82 1133 aaKnown RBP9.74□□□□□ -0.85
CLNS1A-212ENST00000533957 C6orf229H3BNL8 230 aa9.73□□□□□ -0.85
CLNS1A-212ENST00000533957 NDUFV2P19404 249 aa9.73□□□□□ -0.85
CLNS1A-212ENST00000533957 SKOR1P84550 965 aa9.73□□□□□ -0.85
CLNS1A-212ENST00000533957 MOXD2PA6NHM9 499 aa9.72□□□□□ -0.85
CLNS1A-212ENST00000533957 J3QL48 77 aa9.72□□□□□ -0.85
CLNS1A-212ENST00000533957 WNT7BP56706 349 aa9.72□□□□□ -0.85
CLNS1A-212ENST00000533957 PTCRAQ6ISU1 281 aaPredicted RBP9.72□□□□□ -0.85
CLNS1A-212ENST00000533957 NUDT12Q9BQG2 462 aa9.72□□□□□ -0.85
CLNS1A-212ENST00000533957 GIGYF2Q6Y7W6 1299 aaKnown RBP9.71□□□□□ -0.86
CLNS1A-212ENST00000533957 GMPR2Q9P2T1 348 aaKnown RBP9.7□□□□□ -0.86
CLNS1A-212ENST00000533957 BEGAINQ9BUH8 593 aa9.69□□□□□ -0.86
CLNS1A-212ENST00000533957 C11orf95C9JLR9 678 aaPredicted RBP9.68□□□□□ -0.86
CLNS1A-212ENST00000533957 MS4A1P11836 297 aa9.68□□□□□ -0.86
CLNS1A-212ENST00000533957 TRIM66O15016 1216 aa9.67□□□□□ -0.86
CLNS1A-212ENST00000533957 HPS1Q92902 700 aa9.67□□□□□ -0.86
CLNS1A-212ENST00000533957 EVA1BQ9NVM1 165 aa9.67□□□□□ -0.86
CLNS1A-212ENST00000533957 CCNYL3P0C7X3 344 aa9.66□□□□□ -0.86
CLNS1A-212ENST00000533957 PRR7Q8TB68 274 aa9.66□□□□□ -0.86
CLNS1A-212ENST00000533957 SPDYE5A6NIY4 337 aa9.65□□□□□ -0.86
CLNS1A-212ENST00000533957 SIAH2O43255 324 aa9.65□□□□□ -0.86
CLNS1A-212ENST00000533957 MTMR2Q13614 643 aa9.65□□□□□ -0.86
CLNS1A-212ENST00000533957 PTPRNQ16849 979 aa9.65□□□□□ -0.86
CLNS1A-212ENST00000533957 TREML4Q6UXN2 200 aa9.65□□□□□ -0.86
CLNS1A-212ENST00000533957 TBC1D2Q9BYX2 928 aa9.65□□□□□ -0.86
CLNS1A-212ENST00000533957 GJA5P36382 358 aa9.64□□□□□ -0.87
CLNS1A-212ENST00000533957 DIXDC1Q155Q3 683 aa9.64□□□□□ -0.87
CLNS1A-212ENST00000533957 PARP9Q8IXQ6 854 aa9.64□□□□□ -0.87
CLNS1A-212ENST00000533957 AK7Q96M32 723 aa9.64□□□□□ -0.87
CLNS1A-212ENST00000533957 ATP13A2Q9NQ11 1180 aa9.64□□□□□ -0.87
CLNS1A-212ENST00000533957 ALDH1A1P00352 501 aa9.63□□□□□ -0.87
CLNS1A-212ENST00000533957 SH3BP2P78314 561 aa9.63□□□□□ -0.87
CLNS1A-212ENST00000533957 DESI1Q6ICB0 168 aa9.63□□□□□ -0.87
CLNS1A-212ENST00000533957 EHBP1Q8NDI1 1231 aa9.63□□□□□ -0.87
CLNS1A-212ENST00000533957 PCDHB15Q9Y5E8 787 aa9.63□□□□□ -0.87
CLNS1A-212ENST00000533957 KCNH2Q12809 1159 aa9.62□□□□□ -0.87
CLNS1A-212ENST00000533957 LCE2AQ5TA79 106 aaPredicted RBP9.62□□□□□ -0.87
CLNS1A-212ENST00000533957 RSBN1LQ6PCB5 846 aaPredicted RBP9.61□□□□□ -0.87
CLNS1A-212ENST00000533957 BAP1Q92560 729 aa9.61□□□□□ -0.87
CLNS1A-212ENST00000533957 UNC93B1Q9H1C4 597 aa9.61□□□□□ -0.87
CLNS1A-212ENST00000533957 EIF4G1Q04637 1599 aaKnown RBP9.6□□□□□ -0.87
CLNS1A-212ENST00000533957 SPTLC1O15269 473 aa9.6□□□□□ -0.87
CLNS1A-212ENST00000533957 SNRPBP14678 240 aaKnown RBP9.59□□□□□ -0.87
CLNS1A-212ENST00000533957 LYPD8Q6UX82 237 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms