RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 PARP9Q8IXQ6 854 aa9.25□□□□□ -0.93
CD44-235ENST00000532339 RPIAP49247 311 aa9.24□□□□□ -0.93
CD44-235ENST00000532339 MMP16P51512 607 aa9.24□□□□□ -0.93
CD44-235ENST00000532339 GUCA2AQ02747 115 aa9.24□□□□□ -0.93
CD44-235ENST00000532339 ZNF697Q5TEC3 545 aa9.24□□□□□ -0.93
CD44-235ENST00000532339 SPIRE2Q8WWL2 714 aa9.24□□□□□ -0.93
CD44-235ENST00000532339 BEGAINQ9BUH8 593 aa9.23□□□□□ -0.93
CD44-235ENST00000532339 SLC24A3Q9HC58 644 aa9.23□□□□□ -0.93
CD44-235ENST00000532339 FDX1P10109 184 aa9.22□□□□□ -0.93
CD44-235ENST00000532339 DIXDC1Q155Q3 683 aa9.22□□□□□ -0.93
CD44-235ENST00000532339 DXOO77932 396 aaKnown RBP9.21□□□□□ -0.94
CD44-235ENST00000532339 CD2BP2O95400 341 aaKnown RBP9.21□□□□□ -0.94
CD44-235ENST00000532339 PRR20EP86478 221 aa9.21□□□□□ -0.94
CD44-235ENST00000532339 PRR20CP86479 221 aa9.21□□□□□ -0.94
CD44-235ENST00000532339 PRR20DP86480 221 aa9.21□□□□□ -0.94
CD44-235ENST00000532339 PRR20BP86481 221 aa9.21□□□□□ -0.94
CD44-235ENST00000532339 PRR20AP86496 221 aa9.21□□□□□ -0.94
CD44-235ENST00000532339 PDE4DQ08499 809 aa9.21□□□□□ -0.94
CD44-235ENST00000532339 TRIM67Q6ZTA4 783 aa9.21□□□□□ -0.94
CD44-235ENST00000532339 ZBTB24O43167 697 aaPredicted RBP9.2□□□□□ -0.94
CD44-235ENST00000532339 RETREG3Q86VR2 466 aa9.2□□□□□ -0.94
CD44-235ENST00000532339 MOXD2PA6NHM9 499 aa9.19□□□□□ -0.94
CD44-235ENST00000532339 MS4A1P11836 297 aa9.19□□□□□ -0.94
CD44-235ENST00000532339 SYMPKQ92797 1274 aaKnown RBP9.19□□□□□ -0.94
CD44-235ENST00000532339 PCDHGC3Q9UN70 934 aa9.19□□□□□ -0.94
CD44-235ENST00000532339 C6orf229H3BNL8 230 aa9.18□□□□□ -0.94
CD44-235ENST00000532339 GDF9O60383 454 aa9.18□□□□□ -0.94
CD44-235ENST00000532339 JUNDP17535 347 aa9.18□□□□□ -0.94
CD44-235ENST00000532339 NDUFV2P19404 249 aa9.18□□□□□ -0.94
CD44-235ENST00000532339 TBC1D2Q9BYX2 928 aa9.18□□□□□ -0.94
CD44-235ENST00000532339 GJA5P36382 358 aa9.17□□□□□ -0.94
CD44-235ENST00000532339 TRAF7Q6Q0C0 670 aa9.17□□□□□ -0.94
CD44-235ENST00000532339 TNFRSF10AO00220 468 aa9.15□□□□□ -0.94
CD44-235ENST00000532339 FOXC1Q12948 553 aa9.15□□□□□ -0.94
CD44-235ENST00000532339 CCDC24Q8N4L8 307 aa9.15□□□□□ -0.94
CD44-235ENST00000532339 SPDYE5A6NIY4 337 aa9.14□□□□□ -0.95
CD44-235ENST00000532339 MTMR2Q13614 643 aa9.14□□□□□ -0.95
CD44-235ENST00000532339 RSBN1LQ6PCB5 846 aaPredicted RBP9.14□□□□□ -0.95
CD44-235ENST00000532339 PKD2L1Q9P0L9 805 aa9.14□□□□□ -0.95
CD44-235ENST00000532339 DGAT1O75907 488 aa9.13□□□□□ -0.95
CD44-235ENST00000532339 TRIM32Q13049 653 aa9.13□□□□□ -0.95
CD44-235ENST00000532339 PKDCCQ504Y2 493 aa9.13□□□□□ -0.95
CD44-235ENST00000532339 LCE2BO14633 110 aa9.12□□□□□ -0.95
CD44-235ENST00000532339 SPTLC1O15269 473 aa9.12□□□□□ -0.95
CD44-235ENST00000532339 PRR7Q8TB68 274 aa9.11□□□□□ -0.95
CD44-235ENST00000532339 NUDT12Q9BQG2 462 aa9.11□□□□□ -0.95
CD44-235ENST00000532339 FAM187AA6NFU0 413 aa9.1□□□□□ -0.95
CD44-235ENST00000532339 RIC3Q7Z5B4 369 aa9.1□□□□□ -0.95
CD44-235ENST00000532339 PTPRNQ16849 979 aa9.09□□□□□ -0.95
CD44-235ENST00000532339 DESI1Q6ICB0 168 aa9.09□□□□□ -0.95
CD44-235ENST00000532339 ZBTB3Q9H5J0 574 aa9.09□□□□□ -0.95
CD44-235ENST00000532339 WNT7AO00755 349 aa9.08□□□□□ -0.96
CD44-235ENST00000532339 CCNYL3P0C7X3 344 aa9.08□□□□□ -0.96
CD44-235ENST00000532339 PRPF38BQ5VTL8 546 aaKnown RBP9.08□□□□□ -0.96
CD44-235ENST00000532339 CYP4X1Q8N118 509 aa9.08□□□□□ -0.96
CD44-235ENST00000532339 PCDHB15Q9Y5E8 787 aa9.08□□□□□ -0.96
CD44-235ENST00000532339 MYSM1Q5VVJ2 828 aa9.07□□□□□ -0.96
CD44-235ENST00000532339 TOR4AQ9NXH8 423 aa9.07□□□□□ -0.96
CD44-235ENST00000532339 HRCP23327 699 aa9.06□□□□□ -0.96
CD44-235ENST00000532339 WNT7BP56706 349 aa9.06□□□□□ -0.96
CD44-235ENST00000532339 TUSC1Q2TAM9 212 aa9.06□□□□□ -0.96
CD44-235ENST00000532339 RSPH6AQ9H0K4 717 aa9.06□□□□□ -0.96
CD44-235ENST00000532339 MYT1Q01538 1121 aa9.05□□□□□ -0.96
CD44-235ENST00000532339 CSPP1Q1MSJ5 1256 aa9.05□□□□□ -0.96
CD44-235ENST00000532339 EVA1BQ9NVM1 165 aa9.05□□□□□ -0.96
CD44-235ENST00000532339 TTC24A2A3L6 582 aaPredicted RBP9.04□□□□□ -0.96
CD44-235ENST00000532339 PTCRAQ6ISU1 281 aaPredicted RBP9.04□□□□□ -0.96
CD44-235ENST00000532339 MRGPRX2Q96LB1 330 aa9.04□□□□□ -0.96
CD44-235ENST00000532339 LIMD1Q9UGP4 676 aa9.04□□□□□ -0.96
CD44-235ENST00000532339 CFAP99D6REC4 459 aa9.03□□□□□ -0.96
CD44-235ENST00000532339 SKOR1P84550 965 aa9.03□□□□□ -0.96
CD44-235ENST00000532339 KCNH2Q12809 1159 aa9.03□□□□□ -0.96
CD44-235ENST00000532339 SNIP1Q8TAD8 396 aaKnown RBP9.03□□□□□ -0.96
CD44-235ENST00000532339 CABLES1Q8TDN4 633 aa9.03□□□□□ -0.96
CD44-235ENST00000532339 KDM4CQ9H3R0 1056 aa9.03□□□□□ -0.96
CD44-235ENST00000532339 NUTM2BA6NNL0 878 aaPredicted RBP9.02□□□□□ -0.97
CD44-235ENST00000532339 NUTM2EB1AL46 878 aaPredicted RBP9.02□□□□□ -0.97
CD44-235ENST00000532339 CLK2P49760 499 aaKnown RBP9.02□□□□□ -0.97
CD44-235ENST00000532339 RC3H1Q5TC82 1133 aaKnown RBP9.02□□□□□ -0.97
CD44-235ENST00000532339 NUTM2DQ5VT03 806 aaPredicted RBP9.02□□□□□ -0.97
CD44-235ENST00000532339 LYPD8Q6UX82 237 aa9.02□□□□□ -0.97
CD44-235ENST00000532339 NUTM2AQ8IVF1 878 aaPredicted RBP9.02□□□□□ -0.97
CD44-235ENST00000532339 UNC93B1Q9H1C4 597 aa9.02□□□□□ -0.97
CD44-235ENST00000532339 GPBP1L1Q9HC44 474 aaPredicted RBP9.01□□□□□ -0.97
CD44-235ENST00000532339 LILRB3O75022 631 aa9□□□□□ -0.97
CD44-235ENST00000532339 QPCTQ16769 361 aa9□□□□□ -0.97
CD44-235ENST00000532339 DDRGK1Q96HY6 314 aa9□□□□□ -0.97
CD44-235ENST00000532339 AVPP01185 164 aa8.99□□□□□ -0.97
CD44-235ENST00000532339 CTHP32929 405 aa8.99□□□□□ -0.97
CD44-235ENST00000532339 POLR3EQ9NVU0 708 aa8.99□□□□□ -0.97
CD44-235ENST00000532339 SH3BP2P78314 561 aa8.98□□□□□ -0.97
CD44-235ENST00000532339 ZNF787Q6DD87 383 aa8.98□□□□□ -0.97
CD44-235ENST00000532339 CRIPAKQ8N1N5 446 aa8.98□□□□□ -0.97
CD44-235ENST00000532339 TSC1Q92574 1164 aa8.98□□□□□ -0.97
CD44-235ENST00000532339 SMPD1P17405 629 aa8.97□□□□□ -0.97
CD44-235ENST00000532339 CTC1Q2NKJ3 1217 aa8.97□□□□□ -0.97
CD44-235ENST00000532339 EHBP1Q8NDI1 1231 aa8.97□□□□□ -0.97
CD44-235ENST00000532339 HELBQ8NG08 1087 aaPredicted RBP8.97□□□□□ -0.97
CD44-235ENST00000532339 AAASQ9NRG9 546 aa8.97□□□□□ -0.97
CD44-235ENST00000532339 SKIV2LQ15477 1246 aaKnown RBP8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms