RNA–Protein interactions for RNA: ENST00000531430.5

NEDD8-206, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 651 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-206ENST00000531430 WAPLQ7Z5K2 1190 aa13.91□□□□□ -0.18
NEDD8-206ENST00000531430 NPHP3Q7Z494 1330 aa13.9□□□□□ -0.18
NEDD8-206ENST00000531430 NEXMIFQ5QGS0 1516 aa13.9□□□□□ -0.18
NEDD8-206ENST00000531430 GJD4Q96KN9 370 aaPredicted RBP13.9□□□□□ -0.18
NEDD8-206ENST00000531430 KIF1BO60333 1816 aa13.9□□□□□ -0.18
NEDD8-206ENST00000531430 CLTCL1P53675 1640 aa13.9□□□□□ -0.19
NEDD8-206ENST00000531430 RPGRIP1LQ68CZ1 1315 aa13.9□□□□□ -0.19
NEDD8-206ENST00000531430 CCDC125Q86Z20 511 aa13.89□□□□□ -0.19
NEDD8-206ENST00000531430 CCDC9Q9Y3X0 531 aaKnown RBP13.89□□□□□ -0.19
NEDD8-206ENST00000531430 PTCH1Q13635 1447 aa13.89□□□□□ -0.19
NEDD8-206ENST00000531430 SRCAPQ6ZRS2 3230 aa13.88□□□□□ -0.19
NEDD8-206ENST00000531430 TMEM132EQ6IEE7 984 aa13.88□□□□□ -0.19
NEDD8-206ENST00000531430 LMOD2Q6P5Q4 547 aa13.88□□□□□ -0.19
NEDD8-206ENST00000531430 SF3B2Q13435 895 aaKnown RBP13.87□□□□□ -0.19
NEDD8-206ENST00000531430 ATRNO75882 1429 aa13.87□□□□□ -0.19
NEDD8-206ENST00000531430 LRPPRCP42704 1394 aaKnown RBP13.85□□□□□ -0.19
NEDD8-206ENST00000531430 HFM1A2PYH4 1435 aa13.85□□□□□ -0.19
NEDD8-206ENST00000531430 KRT28Q7Z3Y7 464 aa13.85□□□□□ -0.19
NEDD8-206ENST00000531430 UNC5CLQ8IV45 518 aa13.85□□□□□ -0.19
NEDD8-206ENST00000531430 ADGRF5Q8IZF2 1346 aa13.85□□□□□ -0.19
NEDD8-206ENST00000531430 A0A0G2JS52 829 aa13.84□□□□□ -0.19
NEDD8-206ENST00000531430 MYT1Q01538 1121 aa13.84□□□□□ -0.19
NEDD8-206ENST00000531430 DEFB132Q7Z7B7 95 aa13.84□□□□□ -0.19
NEDD8-206ENST00000531430 CABLES1Q8TDN4 633 aa13.84□□□□□ -0.19
NEDD8-206ENST00000531430 BCL9LQ86UU0 1499 aa13.83□□□□□ -0.2
NEDD8-206ENST00000531430 NAIPQ13075 1403 aa13.82□□□□□ -0.2
NEDD8-206ENST00000531430 SEPT12Q8IYM1 358 aa13.82□□□□□ -0.2
NEDD8-206ENST00000531430 PSME1Q06323 249 aa13.81□□□□□ -0.2
NEDD8-206ENST00000531430 SAFB2Q14151 953 aaKnown RBP eCLIP13.81□□□□□ -0.2
NEDD8-206ENST00000531430 SPATA31A3Q5VYP0 1347 aa13.8□□□□□ -0.2
NEDD8-206ENST00000531430 MYOM2P54296 1465 aa13.8□□□□□ -0.2
NEDD8-206ENST00000531430 PHF8Q9UPP1 1060 aa13.79□□□□□ -0.2
NEDD8-206ENST00000531430 PLEKHH1Q9ULM0 1364 aa13.79□□□□□ -0.2
NEDD8-206ENST00000531430 PXDNQ92626 1479 aa13.78□□□□□ -0.2
NEDD8-206ENST00000531430 LAMC1P11047 1609 aa13.78□□□□□ -0.2
NEDD8-206ENST00000531430 PSDA5PKW4 1024 aaPredicted RBP13.77□□□□□ -0.21
NEDD8-206ENST00000531430 KRT27Q7Z3Y8 459 aa13.77□□□□□ -0.21
NEDD8-206ENST00000531430 RALGAPBQ86X10 1494 aa13.77□□□□□ -0.21
NEDD8-206ENST00000531430 PMFBP1Q8TBY8 1022 aa13.77□□□□□ -0.21
NEDD8-206ENST00000531430 COL22A1Q8NFW1 1626 aaPredicted RBP13.76□□□□□ -0.21
NEDD8-206ENST00000531430 BLMP54132 1417 aaPredicted RBP13.76□□□□□ -0.21
NEDD8-206ENST00000531430 MPHOSPH9Q99550 1183 aa13.76□□□□□ -0.21
NEDD8-206ENST00000531430 POGKQ9P215 609 aa13.76□□□□□ -0.21
NEDD8-206ENST00000531430 EP400Q96L91 3159 aa13.76□□□□□ -0.21
NEDD8-206ENST00000531430 CCDC144AA2RUR9 1427 aa13.75□□□□□ -0.21
NEDD8-206ENST00000531430 RRBP1Q9P2E9 1410 aaKnown RBP13.75□□□□□ -0.21
NEDD8-206ENST00000531430 VPS72Q15906 364 aa13.75□□□□□ -0.21
NEDD8-206ENST00000531430 PPLO60437 1756 aa13.74□□□□□ -0.21
NEDD8-206ENST00000531430 FAM83GA6ND36 823 aa13.74□□□□□ -0.21
NEDD8-206ENST00000531430 CFAP70Q5T0N1 1121 aa13.74□□□□□ -0.21
NEDD8-206ENST00000531430 ABCC11Q96J66 1382 aa13.73□□□□□ -0.21
NEDD8-206ENST00000531430 BAG6P46379 1132 aa13.73□□□□□ -0.21
NEDD8-206ENST00000531430 FAM98CQ17RN3 349 aaKnown RBP13.73□□□□□ -0.21
NEDD8-206ENST00000531430 CDC42BPGQ6DT37 1551 aa13.73□□□□□ -0.21
NEDD8-206ENST00000531430 MARF1Q9Y4F3 1742 aaKnown RBP13.73□□□□□ -0.21
NEDD8-206ENST00000531430 ANKRD30BQ9BXX2 1392 aa13.72□□□□□ -0.21
NEDD8-206ENST00000531430 FAM182BQ5T319 152 aa13.72□□□□□ -0.21
NEDD8-206ENST00000531430 PRAM1Q96QH2 718 aa13.72□□□□□ -0.21
NEDD8-206ENST00000531430 DHX57Q6P158 1386 aaKnown RBP13.71□□□□□ -0.21
NEDD8-206ENST00000531430 SLIT2O94813 1529 aa13.71□□□□□ -0.21
NEDD8-206ENST00000531430 BTG4Q9NY30 223 aa13.71□□□□□ -0.21
NEDD8-206ENST00000531430 PRAG1Q86YV5 1406 aa13.71□□□□□ -0.22
NEDD8-206ENST00000531430 YTHDC2Q9H6S0 1430 aaKnown RBP13.71□□□□□ -0.22
NEDD8-206ENST00000531430 GLI3P10071 1580 aa13.71□□□□□ -0.22
NEDD8-206ENST00000531430 ONECUT3O60422 494 aaPredicted RBP13.7□□□□□ -0.22
NEDD8-206ENST00000531430 PAK3O75914 559 aaPredicted RBP13.7□□□□□ -0.22
NEDD8-206ENST00000531430 EN1Q05925 392 aaPredicted RBP13.7□□□□□ -0.22
NEDD8-206ENST00000531430 SIRT1Q96EB6 747 aa13.7□□□□□ -0.22
NEDD8-206ENST00000531430 HIRIP3Q9BW71 556 aaPredicted RBP13.7□□□□□ -0.22
NEDD8-206ENST00000531430 C14orf93Q9H972 538 aaKnown RBP13.7□□□□□ -0.22
NEDD8-206ENST00000531430 BRWD3Q6RI45 1802 aa13.69□□□□□ -0.22
NEDD8-206ENST00000531430 TNS3Q68CZ2 1445 aa13.68□□□□□ -0.22
NEDD8-206ENST00000531430 TRAK1Q9UPV9 953 aa13.68□□□□□ -0.22
NEDD8-206ENST00000531430 KDM2AQ9Y2K7 1162 aa13.68□□□□□ -0.22
NEDD8-206ENST00000531430 TECPR2O15040 1411 aa13.67□□□□□ -0.22
NEDD8-206ENST00000531430 RGPD8O14715 1765 aaPredicted RBP13.67□□□□□ -0.22
NEDD8-206ENST00000531430 MINK1Q8N4C8 1332 aaPredicted RBP13.66□□□□□ -0.22
NEDD8-206ENST00000531430 SPATA31E1Q6ZUB1 1445 aa13.66□□□□□ -0.22
NEDD8-206ENST00000531430 HRCP23327 699 aa13.66□□□□□ -0.22
NEDD8-206ENST00000531430 R3HDM1Q15032 1099 aaKnown RBP13.66□□□□□ -0.22
NEDD8-206ENST00000531430 NGDNQ8NEJ9 315 aaKnown RBP13.66□□□□□ -0.22
NEDD8-206ENST00000531430 ARHGEF10O15013 1369 aa13.66□□□□□ -0.22
NEDD8-206ENST00000531430 USP32Q8NFA0 1604 aa13.65□□□□□ -0.22
NEDD8-206ENST00000531430 FMN2Q9NZ56 1722 aa13.65□□□□□ -0.22
NEDD8-206ENST00000531430 SBNO1A3KN83 1393 aa13.65□□□□□ -0.22
NEDD8-206ENST00000531430 GPRASP1Q5JY77 1395 aa13.65□□□□□ -0.22
NEDD8-206ENST00000531430 KIF1AQ12756 1690 aa13.65□□□□□ -0.22
NEDD8-206ENST00000531430 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.64□□□□□ -0.23
NEDD8-206ENST00000531430 STRN4Q9NRL3 753 aa13.64□□□□□ -0.23
NEDD8-206ENST00000531430 PIK3C2GO75747 1445 aa13.64□□□□□ -0.23
NEDD8-206ENST00000531430 PRDM11Q9NQV5 511 aa13.63□□□□□ -0.23
NEDD8-206ENST00000531430 EVA1CP58658 441 aa13.62□□□□□ -0.23
NEDD8-206ENST00000531430 CHRNA2Q15822 529 aa13.62□□□□□ -0.23
NEDD8-206ENST00000531430 EZH2Q15910 746 aaKnown RBP13.62□□□□□ -0.23
NEDD8-206ENST00000531430 USP35Q9P2H5 1018 aa13.62□□□□□ -0.23
NEDD8-206ENST00000531430 NRXN1Q9ULB1 1477 aa13.61□□□□□ -0.23
NEDD8-206ENST00000531430 TRIM37O94972 964 aa13.61□□□□□ -0.23
NEDD8-206ENST00000531430 ZC3H6P61129 1189 aaKnown RBP13.61□□□□□ -0.23
NEDD8-206ENST00000531430 NUTM2GQ5VZR2 741 aa13.61□□□□□ -0.23
NEDD8-206ENST00000531430 APBA3O96018 575 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms