RNA–Protein interactions for RNA: ENST00000530618.1

SSBP3-213, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 4

Gene SSBP3, Length 524 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-213ENST00000530618 TRIM52Q96A61 297 aa7.02□□□□□ -1.29
SSBP3-213ENST00000530618 BCANQ96GW7 911 aa7.02□□□□□ -1.29
SSBP3-213ENST00000530618 PXDNQ92626 1479 aa7.02□□□□□ -1.29
SSBP3-213ENST00000530618 RGS12O14924 1447 aa7.01□□□□□ -1.29
SSBP3-213ENST00000530618 TECPR2O15040 1411 aa7.01□□□□□ -1.29
SSBP3-213ENST00000530618 TNKS1BP1Q9C0C2 1729 aaKnown RBP7.01□□□□□ -1.29
SSBP3-213ENST00000530618 MYOM2P54296 1465 aa7.01□□□□□ -1.29
SSBP3-213ENST00000530618 ATF3P18847 181 aa7.01□□□□□ -1.29
SSBP3-213ENST00000530618 UPF1Q92900 1129 aaKnown RBP eCLIP7□□□□□ -1.29
SSBP3-213ENST00000530618 USP32Q8NFA0 1604 aa7□□□□□ -1.29
SSBP3-213ENST00000530618 SOS2Q07890 1332 aaPredicted RBP7□□□□□ -1.29
SSBP3-213ENST00000530618 BRWD3Q6RI45 1802 aa6.99□□□□□ -1.29
SSBP3-213ENST00000530618 NRXN1Q9ULB1 1477 aa6.99□□□□□ -1.29
SSBP3-213ENST00000530618 RAB3GAP2Q9H2M9 1393 aa6.99□□□□□ -1.29
SSBP3-213ENST00000530618 AFF2P51816 1311 aa6.99□□□□□ -1.29
SSBP3-213ENST00000530618 CRYBG1Q9Y4K1 1723 aa6.98□□□□□ -1.29
SSBP3-213ENST00000530618 KIF1AQ12756 1690 aa6.98□□□□□ -1.29
SSBP3-213ENST00000530618 C14orf37Q86TY3 774 aa6.98□□□□□ -1.29
SSBP3-213ENST00000530618 PIK3C2GO75747 1445 aa6.98□□□□□ -1.29
SSBP3-213ENST00000530618 ATRNO75882 1429 aa6.97□□□□□ -1.29
SSBP3-213ENST00000530618 GLI3P10071 1580 aa6.97□□□□□ -1.29
SSBP3-213ENST00000530618 ZNF326Q5BKZ1 582 aaKnown RBP6.97□□□□□ -1.29
SSBP3-213ENST00000530618 ZNF772Q68DY9 489 aaPredicted RBP6.97□□□□□ -1.29
SSBP3-213ENST00000530618 ORAI2Q96SN7 254 aa6.97□□□□□ -1.29
SSBP3-213ENST00000530618 SLC4A1APQ9BWU0 796 aaKnown RBP6.97□□□□□ -1.29
SSBP3-213ENST00000530618 TRPM3Q9HCF6 1732 aaPredicted RBP6.97□□□□□ -1.29
SSBP3-213ENST00000530618 ADGRF5Q8IZF2 1346 aa6.97□□□□□ -1.29
SSBP3-213ENST00000530618 PLCH1Q4KWH8 1693 aa6.96□□□□□ -1.29
SSBP3-213ENST00000530618 PLEKHH1Q9ULM0 1364 aa6.96□□□□□ -1.29
SSBP3-213ENST00000530618 BCL9LQ86UU0 1499 aa6.96□□□□□ -1.3
SSBP3-213ENST00000530618 RPGRIP1LQ68CZ1 1315 aa6.96□□□□□ -1.3
SSBP3-213ENST00000530618 NRAPQ86VF7 1730 aa6.96□□□□□ -1.3
SSBP3-213ENST00000530618 NWD2Q9ULI1 1742 aa6.96□□□□□ -1.3
SSBP3-213ENST00000530618 LRPPRCP42704 1394 aaKnown RBP6.95□□□□□ -1.3
SSBP3-213ENST00000530618 ADGRB1O14514 1584 aa6.95□□□□□ -1.3
SSBP3-213ENST00000530618 ADGRB2O60241 1585 aa6.95□□□□□ -1.3
SSBP3-213ENST00000530618 NUTM2BA6NNL0 878 aaPredicted RBP6.95□□□□□ -1.3
SSBP3-213ENST00000530618 NUTM2EB1AL46 878 aaPredicted RBP6.95□□□□□ -1.3
SSBP3-213ENST00000530618 NUTM2AQ8IVF1 878 aaPredicted RBP6.95□□□□□ -1.3
SSBP3-213ENST00000530618 LRRC59Q96AG4 307 aaKnown RBP6.95□□□□□ -1.3
SSBP3-213ENST00000530618 ALS2Q96Q42 1657 aa6.95□□□□□ -1.3
SSBP3-213ENST00000530618 ABCC11Q96J66 1382 aa6.95□□□□□ -1.3
SSBP3-213ENST00000530618 VGFO15240 615 aaPredicted RBP6.94□□□□□ -1.3
SSBP3-213ENST00000530618 RXRBP28702 533 aa6.94□□□□□ -1.3
SSBP3-213ENST00000530618 MEX3CQ5U5Q3 659 aaKnown RBP6.94□□□□□ -1.3
SSBP3-213ENST00000530618 FNBP4Q8N3X1 1017 aaPredicted RBP6.94□□□□□ -1.3
SSBP3-213ENST00000530618 CCER1Q8TC90 406 aaPredicted RBP6.94□□□□□ -1.3
SSBP3-213ENST00000530618 SLIT2O94813 1529 aa6.94□□□□□ -1.3
SSBP3-213ENST00000530618 CLSPNQ9HAW4 1339 aa6.94□□□□□ -1.3
SSBP3-213ENST00000530618 CCDC144AA2RUR9 1427 aa6.93□□□□□ -1.3
SSBP3-213ENST00000530618 YTHDC2Q9H6S0 1430 aaKnown RBP6.93□□□□□ -1.3
SSBP3-213ENST00000530618 DLC1Q96QB1 1528 aa6.93□□□□□ -1.3
SSBP3-213ENST00000530618 LHX8Q68G74 356 aa6.93□□□□□ -1.3
SSBP3-213ENST00000530618 MPHOSPH9Q99550 1183 aa6.93□□□□□ -1.3
SSBP3-213ENST00000530618 ANKRD30BQ9BXX2 1392 aa6.93□□□□□ -1.3
SSBP3-213ENST00000530618 ARHGEF28Q8N1W1 1705 aaKnown RBP6.93□□□□□ -1.3
SSBP3-213ENST00000530618 RBM6P78332 1123 aaKnown RBP6.92□□□□□ -1.3
SSBP3-213ENST00000530618 WAPLQ7Z5K2 1190 aa6.92□□□□□ -1.3
SSBP3-213ENST00000530618 C8orf37Q96NL8 207 aa6.92□□□□□ -1.3
SSBP3-213ENST00000530618 QTRT2Q9H974 415 aaKnown RBP6.92□□□□□ -1.3
SSBP3-213ENST00000530618 TOPAZ1Q8N9V7 1692 aa6.91□□□□□ -1.3
SSBP3-213ENST00000530618 ADAMTS2O95450 1211 aa6.91□□□□□ -1.3
SSBP3-213ENST00000530618 TMEM132EQ6IEE7 984 aa6.9□□□□□ -1.3
SSBP3-213ENST00000530618 NPHP3Q7Z494 1330 aa6.9□□□□□ -1.3
SSBP3-213ENST00000530618 RALGAPBQ86X10 1494 aa6.9□□□□□ -1.31
SSBP3-213ENST00000530618 XPCQ01831 940 aaPredicted RBP6.89□□□□□ -1.31
SSBP3-213ENST00000530618 C14orf93Q9H972 538 aaKnown RBP6.89□□□□□ -1.31
SSBP3-213ENST00000530618 SPATA31A3Q5VYP0 1347 aa6.89□□□□□ -1.31
SSBP3-213ENST00000530618 TNS3Q68CZ2 1445 aa6.89□□□□□ -1.31
SSBP3-213ENST00000530618 PHRF1Q9P1Y6 1649 aaKnown RBP6.89□□□□□ -1.31
SSBP3-213ENST00000530618 TNS1Q9HBL0 1735 aaKnown RBP6.89□□□□□ -1.31
SSBP3-213ENST00000530618 ITSN1Q15811 1721 aa6.88□□□□□ -1.31
SSBP3-213ENST00000530618 THSD7AQ9UPZ6 1657 aa6.88□□□□□ -1.31
SSBP3-213ENST00000530618 ATAD2Q6PL18 1390 aa6.88□□□□□ -1.31
SSBP3-213ENST00000530618 FOXO3O43524 673 aa6.88□□□□□ -1.31
SSBP3-213ENST00000530618 ESCO1Q5FWF5 840 aa6.88□□□□□ -1.31
SSBP3-213ENST00000530618 CHRDL2Q6WN34 429 aa6.88□□□□□ -1.31
SSBP3-213ENST00000530618 SIRT1Q96EB6 747 aa6.88□□□□□ -1.31
SSBP3-213ENST00000530618 NGLY1Q96IV0 654 aa6.88□□□□□ -1.31
SSBP3-213ENST00000530618 USP21Q9UK80 565 aa6.88□□□□□ -1.31
SSBP3-213ENST00000530618 TRPC5Q9UL62 973 aaPredicted RBP6.88□□□□□ -1.31
SSBP3-213ENST00000530618 KIAA1210Q9ULL0 1709 aa6.87□□□□□ -1.31
SSBP3-213ENST00000530618 TULP4Q9NRJ4 1543 aa6.87□□□□□ -1.31
SSBP3-213ENST00000530618 ANKARQ7Z5J8 1434 aa6.87□□□□□ -1.31
SSBP3-213ENST00000530618 DHX57Q6P158 1386 aaKnown RBP6.87□□□□□ -1.31
SSBP3-213ENST00000530618 PRR36Q9H6K5 1346 aa6.87□□□□□ -1.31
SSBP3-213ENST00000530618 ZEB1P37275 1124 aaPredicted RBP6.87□□□□□ -1.31
SSBP3-213ENST00000530618 RGL3Q3MIN7 710 aa6.87□□□□□ -1.31
SSBP3-213ENST00000530618 CFAP70Q5T0N1 1121 aa6.87□□□□□ -1.31
SSBP3-213ENST00000530618 STAC3Q96MF2 364 aa6.87□□□□□ -1.31
SSBP3-213ENST00000530618 STK26Q9P289 416 aa6.87□□□□□ -1.31
SSBP3-213ENST00000530618 COL14A1Q05707 1796 aaKnown RBP6.87□□□□□ -1.31
SSBP3-213ENST00000530618 ATP7BP35670 1465 aa6.86□□□□□ -1.31
SSBP3-213ENST00000530618 SBNO1A3KN83 1393 aa6.86□□□□□ -1.31
SSBP3-213ENST00000530618 TONSLQ96HA7 1378 aa6.86□□□□□ -1.31
SSBP3-213ENST00000530618 NUTM2FA1L443 756 aa6.86□□□□□ -1.31
SSBP3-213ENST00000530618 TIMELESSQ9UNS1 1208 aa6.86□□□□□ -1.31
SSBP3-213ENST00000530618 LRP5O75197 1615 aa6.86□□□□□ -1.31
SSBP3-213ENST00000530618 RGPD1P0DJD0 1748 aa6.85□□□□□ -1.31
SSBP3-213ENST00000530618 LMO7Q8WWI1 1683 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms