RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 NPC1L1Q9UHC9 1359 aa18.14■□□□□ 0.49
USP48-213ENST00000529637 L1TD1Q5T7N2 865 aaKnown RBP18.14■□□□□ 0.49
USP48-213ENST00000529637 RAPGEF3O95398 923 aa18.13■□□□□ 0.49
USP48-213ENST00000529637 STK26Q9P289 416 aa18.13■□□□□ 0.49
USP48-213ENST00000529637 DEPDC5O75140 1603 aa18.13■□□□□ 0.49
USP48-213ENST00000529637 BECN1Q14457 450 aa18.13■□□□□ 0.49
USP48-213ENST00000529637 VSIG10Q8N0Z9 540 aa18.13■□□□□ 0.49
USP48-213ENST00000529637 NLRP1Q9C000 1473 aa18.13■□□□□ 0.49
USP48-213ENST00000529637 PANK1Q8TE04 598 aa18.12■□□□□ 0.49
USP48-213ENST00000529637 ABCA9Q8IUA7 1624 aa18.12■□□□□ 0.49
USP48-213ENST00000529637 ABCA6Q8N139 1617 aa18.12■□□□□ 0.49
USP48-213ENST00000529637 MAP3K4Q9Y6R4 1608 aa18.12■□□□□ 0.49
USP48-213ENST00000529637 TRMT2AQ8IZ69 625 aaKnown RBP18.11■□□□□ 0.49
USP48-213ENST00000529637 TBC1D2Q9BYX2 928 aa18.11■□□□□ 0.49
USP48-213ENST00000529637 COG6Q9Y2V7 657 aa18.11■□□□□ 0.49
USP48-213ENST00000529637 CD109Q6YHK3 1445 aa18.11■□□□□ 0.49
USP48-213ENST00000529637 ZNF518AQ6AHZ1 1483 aa18.11■□□□□ 0.49
USP48-213ENST00000529637 KIF1BO60333 1816 aa18.11■□□□□ 0.49
USP48-213ENST00000529637 NKTRP30414 1462 aaKnown RBP18.1■□□□□ 0.49
USP48-213ENST00000529637 MTHFSP49914 203 aa18.1■□□□□ 0.49
USP48-213ENST00000529637 MYOM2P54296 1465 aa18.1■□□□□ 0.49
USP48-213ENST00000529637 WWC1Q8IX03 1113 aa18.1■□□□□ 0.49
USP48-213ENST00000529637 BCL2L13Q9BXK5 485 aa18.1■□□□□ 0.49
USP48-213ENST00000529637 ZMYND15Q9H091 742 aa18.1■□□□□ 0.49
USP48-213ENST00000529637 PNNQ9H307 717 aaKnown RBP18.1■□□□□ 0.49
USP48-213ENST00000529637 C14orf93Q9H972 538 aaKnown RBP18.1■□□□□ 0.49
USP48-213ENST00000529637 EFCAB6Q5THR3 1501 aa18.09■□□□□ 0.49
USP48-213ENST00000529637 CFAP53Q96M91 514 aa18.09■□□□□ 0.49
USP48-213ENST00000529637 VWDEQ8N2E2 1590 aa18.09■□□□□ 0.49
USP48-213ENST00000529637 GOLGA6L3A6NEY3 463 aa18.09■□□□□ 0.49
USP48-213ENST00000529637 MYOM1P52179 1685 aa18.09■□□□□ 0.49
USP48-213ENST00000529637 TCP11L2Q8N4U5 519 aa18.08■□□□□ 0.49
USP48-213ENST00000529637 CABP2Q9NPB3 220 aa18.08■□□□□ 0.49
USP48-213ENST00000529637 OSCARQ8IYS5 282 aa18.08■□□□□ 0.48
USP48-213ENST00000529637 NPATQ14207 1427 aa18.08■□□□□ 0.48
USP48-213ENST00000529637 FSD2A1L4K1 749 aa18.08■□□□□ 0.48
USP48-213ENST00000529637 U2AF1L5P0DN76 240 aaPredicted RBP18.08■□□□□ 0.48
USP48-213ENST00000529637 U2AF1Q01081 240 aaKnown RBP eCLIP18.08■□□□□ 0.481e-6■■■□□ 16.8
USP48-213ENST00000529637 VIRMAQ69YN4 1812 aaKnown RBP18.07■□□□□ 0.48
USP48-213ENST00000529637 CGNL1Q0VF96 1302 aa18.07■□□□□ 0.48
USP48-213ENST00000529637 MROH1Q8NDA8 1641 aa18.07■□□□□ 0.48
USP48-213ENST00000529637 CLUAP1Q96AJ1 413 aa18.07■□□□□ 0.48
USP48-213ENST00000529637 SRPK2P78362 688 aaKnown RBP18.06■□□□□ 0.48
USP48-213ENST00000529637 PPRC1Q5VV67 1664 aaKnown RBP18.06■□□□□ 0.48
USP48-213ENST00000529637 RUNDC1Q96C34 613 aa18.06■□□□□ 0.48
USP48-213ENST00000529637 CLCN1P35523 988 aa18.06■□□□□ 0.48
USP48-213ENST00000529637 KIDINS220Q9ULH0 1771 aa18.05■□□□□ 0.48
USP48-213ENST00000529637 EVC2Q86UK5 1308 aa18.04■□□□□ 0.48
USP48-213ENST00000529637 VGFO15240 615 aaPredicted RBP18.04■□□□□ 0.48
USP48-213ENST00000529637 HSP90AA2PQ14568 343 aaPredicted RBP18.04■□□□□ 0.48
USP48-213ENST00000529637 TBC1D32Q96NH3 1257 aa18.04■□□□□ 0.48
USP48-213ENST00000529637 TNNQ9UQP3 1299 aa18.04■□□□□ 0.48
USP48-213ENST00000529637 U2SURPO15042 1029 aaKnown RBP18.04■□□□□ 0.48
USP48-213ENST00000529637 MCM4P33991 863 aa18.04■□□□□ 0.48
USP48-213ENST00000529637 MAPK8IP3Q9UPT6 1336 aa18.04■□□□□ 0.48
USP48-213ENST00000529637 MROH2AA6NES4 1674 aa18.03■□□□□ 0.48
USP48-213ENST00000529637 KIAA1210Q9ULL0 1709 aa18.03■□□□□ 0.48
USP48-213ENST00000529637 POLR3AO14802 1390 aaPredicted RBP18.03■□□□□ 0.48
USP48-213ENST00000529637 NGEFQ8N5V2 710 aa18.02■□□□□ 0.48
USP48-213ENST00000529637 GLIPR1L2Q4G1C9 344 aa18.02■□□□□ 0.48
USP48-213ENST00000529637 PCDHB15Q9Y5E8 787 aa18.02■□□□□ 0.48
USP48-213ENST00000529637 HSP90AA1P07900 732 aaKnown RBP18.01■□□□□ 0.47
USP48-213ENST00000529637 SBNO2Q9Y2G9 1366 aa18.01■□□□□ 0.47
USP48-213ENST00000529637 ERBB4Q15303 1308 aa18■□□□□ 0.47
USP48-213ENST00000529637 POGZQ7Z3K3 1410 aa18■□□□□ 0.47
USP48-213ENST00000529637 STAG3Q9UJ98 1225 aa18■□□□□ 0.47
USP48-213ENST00000529637 MINK1Q8N4C8 1332 aaPredicted RBP18■□□□□ 0.47
USP48-213ENST00000529637 IDI1Q13907 227 aa18■□□□□ 0.47
USP48-213ENST00000529637 GGNBP2Q9H3C7 697 aa18■□□□□ 0.47
USP48-213ENST00000529637 RPGRIP1LQ68CZ1 1315 aa17.99■□□□□ 0.47
USP48-213ENST00000529637 TRAK2O60296 914 aa17.99■□□□□ 0.47
USP48-213ENST00000529637 PDE3AQ14432 1141 aa17.99■□□□□ 0.47
USP48-213ENST00000529637 PDZRN3Q9UPQ7 1066 aa17.99■□□□□ 0.47
USP48-213ENST00000529637 RLBP1P12271 317 aa17.98■□□□□ 0.47
USP48-213ENST00000529637 UPF2Q9HAU5 1272 aaKnown RBP17.98■□□□□ 0.47
USP48-213ENST00000529637 ADGRB3O60242 1522 aa17.98■□□□□ 0.47
USP48-213ENST00000529637 RARSP54136 660 aaKnown RBP17.96■□□□□ 0.47
USP48-213ENST00000529637 NRXN1Q9ULB1 1477 aa17.95■□□□□ 0.46
USP48-213ENST00000529637 RRP9O43818 475 aaKnown RBP17.95■□□□□ 0.46
USP48-213ENST00000529637 MYH16Q9H6N6 1097 aa17.94■□□□□ 0.46
USP48-213ENST00000529637 NEURL4Q96JN8 1562 aa17.94■□□□□ 0.46
USP48-213ENST00000529637 LMTK2Q8IWU2 1503 aa17.94■□□□□ 0.46
USP48-213ENST00000529637 FTSJ3Q8IY81 847 aaKnown RBP17.94■□□□□ 0.46
USP48-213ENST00000529637 TSR2Q969E8 191 aaKnown RBP17.94■□□□□ 0.46
USP48-213ENST00000529637 GRPEL1Q9HAV7 217 aa17.93■□□□□ 0.46
USP48-213ENST00000529637 MRE11P49959 708 aa17.93■□□□□ 0.46
USP48-213ENST00000529637 PRAM1Q96QH2 718 aa17.93■□□□□ 0.46
USP48-213ENST00000529637 MLH3Q9UHC1 1453 aa17.92■□□□□ 0.46
USP48-213ENST00000529637 ESPNB1AK53 854 aa17.92■□□□□ 0.46
USP48-213ENST00000529637 QRICH2Q9H0J4 1663 aa17.92■□□□□ 0.46
USP48-213ENST00000529637 MFAP1P55081 439 aaKnown RBP17.92■□□□□ 0.46
USP48-213ENST00000529637 WDR63Q8IWG1 891 aa17.92■□□□□ 0.46
USP48-213ENST00000529637 IFT172Q9UG01 1749 aa17.91■□□□□ 0.46
USP48-213ENST00000529637 CHMP5Q9NZZ3 219 aa17.91■□□□□ 0.46
USP48-213ENST00000529637 ABCC3O15438 1527 aa17.91■□□□□ 0.46
USP48-213ENST00000529637 ANKRD36BQ8N2N9 1353 aa17.9■□□□□ 0.46
USP48-213ENST00000529637 HECW2Q9P2P5 1572 aa17.9■□□□□ 0.46
USP48-213ENST00000529637 GAS2L3Q86XJ1 694 aa17.9■□□□□ 0.46
USP48-213ENST00000529637 FRMPD1Q5SYB0 1578 aa17.9■□□□□ 0.46
USP48-213ENST00000529637 SETBP1Q9Y6X0 1596 aa17.9■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms