RNA–Protein interactions for RNA: ENST00000528165.5

CAPN1-214, Transcript of calpain 1, humanhuman

TSL 2

Gene CAPN1, Length 2,828 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-214ENST00000528165 ISY1Q9ULR0 285 aaKnown RBP18.55■□□□□ 0.56
CAPN1-214ENST00000528165 HSCBQ8IWL3 235 aa18.54■□□□□ 0.56
CAPN1-214ENST00000528165 TTC37Q6PGP7 1564 aa18.54■□□□□ 0.56
CAPN1-214ENST00000528165 RUNDC1Q96C34 613 aa18.54■□□□□ 0.56
CAPN1-214ENST00000528165 SPHKAPQ2M3C7 1700 aa18.53■□□□□ 0.56
CAPN1-214ENST00000528165 VSIG10Q8N0Z9 540 aa18.53■□□□□ 0.56
CAPN1-214ENST00000528165 ESPNB1AK53 854 aa18.52■□□□□ 0.56
CAPN1-214ENST00000528165 WDR63Q8IWG1 891 aa18.52■□□□□ 0.56
CAPN1-214ENST00000528165 TCP11L2Q8N4U5 519 aa18.52■□□□□ 0.56
CAPN1-214ENST00000528165 ERCC6Q03468 1493 aa18.52■□□□□ 0.56
CAPN1-214ENST00000528165 MVPQ14764 893 aaKnown RBP18.51■□□□□ 0.55
CAPN1-214ENST00000528165 RTEL1-TNFRSF6BF6WH68 1400 aa18.51■□□□□ 0.55
CAPN1-214ENST00000528165 CEP152O94986 1710 aa18.51■□□□□ 0.55
CAPN1-214ENST00000528165 TRIM44Q96DX7 344 aaPredicted RBP18.5■□□□□ 0.55
CAPN1-214ENST00000528165 FTSJ3Q8IY81 847 aaKnown RBP18.5■□□□□ 0.55
CAPN1-214ENST00000528165 ERVK-7P63135 1459 aa18.49■□□□□ 0.55
CAPN1-214ENST00000528165 TRPM2O94759 1503 aa18.49■□□□□ 0.55
CAPN1-214ENST00000528165 MORC1Q86VD1 984 aa18.48■□□□□ 0.55
CAPN1-214ENST00000528165 PHF23Q9BUL5 403 aaPredicted RBP18.48■□□□□ 0.55
CAPN1-214ENST00000528165 ZKSCAN2Q63HK3 967 aa18.48■□□□□ 0.55
CAPN1-214ENST00000528165 TNNT2P45379 298 aaPredicted RBP18.47■□□□□ 0.55
CAPN1-214ENST00000528165 DZIP1LQ8IYY4 767 aaKnown RBP18.47■□□□□ 0.55
CAPN1-214ENST00000528165 ZNF692Q9BU19 519 aaPredicted RBP18.47■□□□□ 0.55
CAPN1-214ENST00000528165 ZMYND15Q9H091 742 aa18.46■□□□□ 0.55
CAPN1-214ENST00000528165 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.46■□□□□ 0.554e-8■■■■□ 20.7
CAPN1-214ENST00000528165 IQSEC2Q5JU85 1478 aa18.46■□□□□ 0.55
CAPN1-214ENST00000528165 ERBB4Q15303 1308 aa18.45■□□□□ 0.54
CAPN1-214ENST00000528165 CCDC27Q2M243 656 aa18.45■□□□□ 0.54
CAPN1-214ENST00000528165 SHPRHQ149N8 1683 aa18.44■□□□□ 0.54
CAPN1-214ENST00000528165 CFAP70Q5T0N1 1121 aa18.44■□□□□ 0.54
CAPN1-214ENST00000528165 GBP4Q96PP9 640 aa18.44■□□□□ 0.54
CAPN1-214ENST00000528165 KANK1Q14678 1352 aa18.44■□□□□ 0.54
CAPN1-214ENST00000528165 KIAA1210Q9ULL0 1709 aa18.43■□□□□ 0.54
CAPN1-214ENST00000528165 CLTCL1P53675 1640 aa18.43■□□□□ 0.54
CAPN1-214ENST00000528165 NCOA3Q9Y6Q9 1424 aa18.43■□□□□ 0.54
CAPN1-214ENST00000528165 HDAC1Q13547 482 aaPredicted RBP18.43■□□□□ 0.54
CAPN1-214ENST00000528165 PTPRTO14522 1441 aa18.43■□□□□ 0.54
CAPN1-214ENST00000528165 DDIT3P35638 169 aa18.42■□□□□ 0.54
CAPN1-214ENST00000528165 TNPO1Q92973 898 aaKnown RBP18.42■□□□□ 0.54
CAPN1-214ENST00000528165 SKOR2Q2VWA4 1001 aaPredicted RBP18.41■□□□□ 0.54
CAPN1-214ENST00000528165 NSD3Q9BZ95 1437 aa18.41■□□□□ 0.54
CAPN1-214ENST00000528165 SNX21Q969T3 373 aa18.41■□□□□ 0.54
CAPN1-214ENST00000528165 CFAP53Q96M91 514 aa18.41■□□□□ 0.54
CAPN1-214ENST00000528165 CIZ1Q9ULV3 898 aaPredicted RBP18.41■□□□□ 0.54
CAPN1-214ENST00000528165 HSP90AB1P08238 724 aaKnown RBP18.4■□□□□ 0.54
CAPN1-214ENST00000528165 PTMSP20962 102 aa18.4■□□□□ 0.54
CAPN1-214ENST00000528165 RBM25P49756 843 aaKnown RBP18.4■□□□□ 0.54
CAPN1-214ENST00000528165 GAS2L3Q86XJ1 694 aa18.4■□□□□ 0.54
CAPN1-214ENST00000528165 ITPRIPQ8IWB1 547 aa18.4■□□□□ 0.54
CAPN1-214ENST00000528165 SMC5Q8IY18 1101 aa18.4■□□□□ 0.54
CAPN1-214ENST00000528165 SMC4Q9NTJ3 1288 aa18.4■□□□□ 0.54
CAPN1-214ENST00000528165 DDX19BQ9UMR2 479 aa18.4■□□□□ 0.54
CAPN1-214ENST00000528165 TPM2P07951 284 aa18.39■□□□□ 0.53
CAPN1-214ENST00000528165 CT47B1P0C2W7 299 aaPredicted RBP18.38■□□□□ 0.53
CAPN1-214ENST00000528165 MTHFSP49914 203 aa18.38■□□□□ 0.53
CAPN1-214ENST00000528165 RAB3GAP1Q15042 981 aa18.37■□□□□ 0.53
CAPN1-214ENST00000528165 TRIM27P14373 513 aa18.36■□□□□ 0.53
CAPN1-214ENST00000528165 NCBP3Q53F19 620 aaKnown RBP18.36■□□□□ 0.53
CAPN1-214ENST00000528165 EFCAB2Q5VUJ9 269 aa18.36■□□□□ 0.53
CAPN1-214ENST00000528165 ADGRF5Q8IZF2 1346 aa18.35■□□□□ 0.53
CAPN1-214ENST00000528165 ZNF518AQ6AHZ1 1483 aa18.35■□□□□ 0.53
CAPN1-214ENST00000528165 SBNO2Q9Y2G9 1366 aa18.35■□□□□ 0.53
CAPN1-214ENST00000528165 U2AF1L5P0DN76 240 aaPredicted RBP18.35■□□□□ 0.53
CAPN1-214ENST00000528165 U2AF1Q01081 240 aaKnown RBP eCLIP18.35■□□□□ 0.53
CAPN1-214ENST00000528165 TSR2Q969E8 191 aaKnown RBP18.35■□□□□ 0.53
CAPN1-214ENST00000528165 ABCA6Q8N139 1617 aa18.34■□□□□ 0.53
CAPN1-214ENST00000528165 MAP3K4Q9Y6R4 1608 aa18.34■□□□□ 0.53
CAPN1-214ENST00000528165 CCDC173Q0VFZ6 552 aa18.34■□□□□ 0.53
CAPN1-214ENST00000528165 ATF7IPQ6VMQ6 1270 aa18.34■□□□□ 0.53
CAPN1-214ENST00000528165 SLC12A5Q9H2X9 1139 aa18.34■□□□□ 0.53
CAPN1-214ENST00000528165 MYOM2P54296 1465 aa18.34■□□□□ 0.53
CAPN1-214ENST00000528165 TRAPPC8Q9Y2L5 1435 aa18.33■□□□□ 0.53
CAPN1-214ENST00000528165 ANP32BQ92688 251 aaKnown RBP18.33■□□□□ 0.53
CAPN1-214ENST00000528165 SPAG9O60271 1321 aaKnown RBP18.33■□□□□ 0.53
CAPN1-214ENST00000528165 SHROOM2Q13796 1616 aa18.33■□□□□ 0.52
CAPN1-214ENST00000528165 EXOSC9Q06265 439 aaKnown RBP18.32■□□□□ 0.52
CAPN1-214ENST00000528165 PLCH2O75038 1416 aa18.32■□□□□ 0.52
CAPN1-214ENST00000528165 SSH1Q8WYL5 1049 aa18.32■□□□□ 0.52
CAPN1-214ENST00000528165 TET3O43151 1660 aa18.31■□□□□ 0.52
CAPN1-214ENST00000528165 GOLGA6L22H0YM25 854 aa18.31■□□□□ 0.52
CAPN1-214ENST00000528165 PDCL3Q9H2J4 239 aa18.31■□□□□ 0.52
CAPN1-214ENST00000528165 NASPP49321 788 aaPredicted RBP18.31■□□□□ 0.52
CAPN1-214ENST00000528165 NUCB1Q02818 461 aa18.31■□□□□ 0.52
CAPN1-214ENST00000528165 KIAA1211Q6ZU35 1233 aa18.31■□□□□ 0.52
CAPN1-214ENST00000528165 LNPKQ9C0E8 428 aa18.31■□□□□ 0.52
CAPN1-214ENST00000528165 FOXD4L1Q9NU39 408 aa18.3■□□□□ 0.52
CAPN1-214ENST00000528165 NOB1Q9ULX3 412 aaKnown RBP18.3■□□□□ 0.52
CAPN1-214ENST00000528165 MYO3AQ8NEV4 1616 aa18.3■□□□□ 0.52
CAPN1-214ENST00000528165 ABCC1P33527 1531 aa18.3■□□□□ 0.52
CAPN1-214ENST00000528165 TMEM57Q8N5G2 664 aa18.3■□□□□ 0.52
CAPN1-214ENST00000528165 NEURL4Q96JN8 1562 aa18.29■□□□□ 0.52
CAPN1-214ENST00000528165 ZSCAN30Q86W11 494 aa18.29■□□□□ 0.52
CAPN1-214ENST00000528165 ZBTB40Q9NUA8 1239 aa18.29■□□□□ 0.52
CAPN1-214ENST00000528165 PPP1R9BQ96SB3 815 aa18.29■□□□□ 0.52
CAPN1-214ENST00000528165 ADGRL1O94910 1474 aa18.29■□□□□ 0.52
CAPN1-214ENST00000528165 K7ELQ4 463 aaPredicted RBP18.28■□□□□ 0.52
CAPN1-214ENST00000528165 CHD1LQ86WJ1 897 aa18.28■□□□□ 0.52
CAPN1-214ENST00000528165 BMP2KLQ5H9B9 411 aa18.27■□□□□ 0.52
CAPN1-214ENST00000528165 IPO8O15397 1037 aaKnown RBP18.27■□□□□ 0.51
CAPN1-214ENST00000528165 MSNP26038 577 aaKnown RBP18.27■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms