RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-223	ENST00000526553	PCDHGC3	Q9UN70	934 aa		10.64	□□□□□ -0.71
CD44-223	ENST00000526553		A0A0G2JS52	829 aa		10.63	□□□□□ -0.71
CD44-223	ENST00000526553	CLK2	P49760	499 aa	Known RBP	10.62	□□□□□ -0.71
CD44-223	ENST00000526553	GOPC	Q9HD26	462 aa		10.62	□□□□□ -0.71
CD44-223	ENST00000526553	SKIV2L	Q15477	1246 aa	Known RBP	10.61	□□□□□ -0.71
CD44-223	ENST00000526553	MSS51	Q4VC12	460 aa		10.61	□□□□□ -0.71
CD44-223	ENST00000526553	IL27	Q8NEV9	243 aa		10.61	□□□□□ -0.71
CD44-223	ENST00000526553	LIMD1	Q9UGP4	676 aa		10.61	□□□□□ -0.71
CD44-223	ENST00000526553	RETREG3	Q86VR2	466 aa		10.6	□□□□□ -0.71
CD44-223	ENST00000526553	USB1	Q9BQ65	265 aa	Known RBP	10.6	□□□□□ -0.71
CD44-223	ENST00000526553	PRPF38B	Q5VTL8	546 aa	Known RBP	10.59	□□□□□ -0.71
CD44-223	ENST00000526553	SLC6A16	Q9GZN6	736 aa		10.59	□□□□□ -0.71
CD44-223	ENST00000526553	SPDYE5	A6NIY4	337 aa		10.58	□□□□□ -0.72
CD44-223	ENST00000526553	C6orf229	H3BNL8	230 aa		10.58	□□□□□ -0.72
CD44-223	ENST00000526553	GGCX	P38435	758 aa		10.58	□□□□□ -0.72
CD44-223	ENST00000526553	MTMR2	Q13614	643 aa		10.58	□□□□□ -0.72
CD44-223	ENST00000526553	FAM160A2	Q8N612	972 aa	Predicted RBP	10.58	□□□□□ -0.72
CD44-223	ENST00000526553	ZBTB3	Q9H5J0	574 aa		10.58	□□□□□ -0.72
CD44-223	ENST00000526553	POLR3E	Q9NVU0	708 aa		10.58	□□□□□ -0.72
CD44-223	ENST00000526553	PCDHB15	Q9Y5E8	787 aa		10.58	□□□□□ -0.72
CD44-223	ENST00000526553	S1PR4	O95977	384 aa		10.57	□□□□□ -0.72
CD44-223	ENST00000526553	PPP1R18	Q6NYC8	613 aa		10.57	□□□□□ -0.72
CD44-223	ENST00000526553	SYMPK	Q92797	1274 aa	Known RBP	10.57	□□□□□ -0.72
CD44-223	ENST00000526553	EIF4ENIF1	Q9NRA8	985 aa	Known RBP	10.56	□□□□□ -0.72
CD44-223	ENST00000526553	HRC	P23327	699 aa		10.55	□□□□□ -0.72
CD44-223	ENST00000526553	LILRB3	O75022	631 aa		10.54	□□□□□ -0.72
CD44-223	ENST00000526553	MMP16	P51512	607 aa		10.54	□□□□□ -0.72
CD44-223	ENST00000526553	CSPP1	Q1MSJ5	1256 aa		10.54	□□□□□ -0.72
CD44-223	ENST00000526553	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	10.54	□□□□□ -0.72
CD44-223	ENST00000526553	PRDM9	Q9NQV7	894 aa		10.54	□□□□□ -0.72
CD44-223	ENST00000526553	QPCT	Q16769	361 aa		10.53	□□□□□ -0.72
CD44-223	ENST00000526553	PCMTD1	Q96MG8	357 aa	Predicted RBP	10.53	□□□□□ -0.72
CD44-223	ENST00000526553	RNF223	E7ERA6	249 aa		10.52	□□□□□ -0.73
CD44-223	ENST00000526553	DXO	O77932	396 aa	Known RBP	10.52	□□□□□ -0.73
CD44-223	ENST00000526553	JUND	P17535	347 aa		10.52	□□□□□ -0.73
CD44-223	ENST00000526553	PROCA1	Q8NCQ7	364 aa	Predicted RBP	10.52	□□□□□ -0.73
CD44-223	ENST00000526553	CABLES1	Q8TDN4	633 aa		10.52	□□□□□ -0.73
CD44-223	ENST00000526553	DESI1	Q6ICB0	168 aa		10.51	□□□□□ -0.73
CD44-223	ENST00000526553	ANKLE1	Q8NAG6	615 aa		10.51	□□□□□ -0.73
CD44-223	ENST00000526553	PRR7	Q8TB68	274 aa		10.51	□□□□□ -0.73
CD44-223	ENST00000526553	NUTM2B	A6NNL0	878 aa	Predicted RBP	10.5	□□□□□ -0.73
CD44-223	ENST00000526553	NUTM2E	B1AL46	878 aa	Predicted RBP	10.5	□□□□□ -0.73
CD44-223	ENST00000526553	RGS20	O76081	388 aa		10.5	□□□□□ -0.73
CD44-223	ENST00000526553	NUTM2D	Q5VT03	806 aa	Predicted RBP	10.5	□□□□□ -0.73
CD44-223	ENST00000526553	PPP2R2D	Q66LE6	453 aa		10.5	□□□□□ -0.73
CD44-223	ENST00000526553	NUTM2A	Q8IVF1	878 aa	Predicted RBP	10.5	□□□□□ -0.73
CD44-223	ENST00000526553	CFAP99	D6REC4	459 aa		10.48	□□□□□ -0.73
CD44-223	ENST00000526553	PPEF1	O14829	653 aa	Predicted RBP	10.47	□□□□□ -0.73
CD44-223	ENST00000526553	RTL5	Q5HYW3	569 aa	Predicted RBP	10.47	□□□□□ -0.73
CD44-223	ENST00000526553	ATP1B4	Q9UN42	357 aa	Predicted RBP	10.47	□□□□□ -0.73
CD44-223	ENST00000526553	FCF1	Q9Y324	198 aa	Known RBP	10.47	□□□□□ -0.73
CD44-223	ENST00000526553	PTPRN	Q16849	979 aa		10.45	□□□□□ -0.74
CD44-223	ENST00000526553	FBXO31	Q5XUX0	539 aa	Predicted RBP	10.45	□□□□□ -0.74
CD44-223	ENST00000526553	HELB	Q8NG08	1087 aa	Predicted RBP	10.44	□□□□□ -0.74
CD44-223	ENST00000526553	TMEM132A	Q24JP5	1023 aa		10.42	□□□□□ -0.74
CD44-223	ENST00000526553	PLA2G2C	Q5R387	149 aa		10.42	□□□□□ -0.74
CD44-223	ENST00000526553	LYPD8	Q6UX82	237 aa		10.42	□□□□□ -0.74
CD44-223	ENST00000526553	NUDT12	Q9BQG2	462 aa		10.42	□□□□□ -0.74
CD44-223	ENST00000526553	CCNYL3	P0C7X3	344 aa		10.41	□□□□□ -0.74
CD44-223	ENST00000526553	RFC5	P40937	340 aa		10.41	□□□□□ -0.74
CD44-223	ENST00000526553		V9GY48	417 aa	Predicted RBP	10.41	□□□□□ -0.74
CD44-223	ENST00000526553	TSC1	Q92574	1164 aa		10.4	□□□□□ -0.74
CD44-223	ENST00000526553	EMID1	Q96A84	441 aa	Predicted RBP	10.39	□□□□□ -0.75
CD44-223	ENST00000526553	PRKD2	Q9BZL6	878 aa		10.39	□□□□□ -0.75
CD44-223	ENST00000526553	SLC19A1	P41440	591 aa		10.38	□□□□□ -0.75
CD44-223	ENST00000526553	RPIA	P49247	311 aa		10.38	□□□□□ -0.75
CD44-223	ENST00000526553	CCDC24	Q8N4L8	307 aa		10.38	□□□□□ -0.75
CD44-223	ENST00000526553	EVA1B	Q9NVM1	165 aa		10.38	□□□□□ -0.75
CD44-223	ENST00000526553	TMEM259	Q4ZIN3	620 aa		10.37	□□□□□ -0.75
CD44-223	ENST00000526553	LIAT1	Q6ZQX7	453 aa		10.37	□□□□□ -0.75
CD44-223	ENST00000526553	PER1	O15534	1290 aa	Predicted RBP	10.36	□□□□□ -0.75
CD44-223	ENST00000526553	AP1G2	O75843	785 aa		10.36	□□□□□ -0.75
CD44-223	ENST00000526553	F12	P00748	615 aa	Predicted RBP	10.36	□□□□□ -0.75
CD44-223	ENST00000526553	ZBTB24	O43167	697 aa	Predicted RBP	10.35	□□□□□ -0.75
CD44-223	ENST00000526553	CTDSPL2	Q05D32	466 aa		10.35	□□□□□ -0.75
CD44-223	ENST00000526553	KCNH2	Q12809	1159 aa		10.35	□□□□□ -0.75
CD44-223	ENST00000526553	SPRYD7	Q5W111	196 aa		10.34	□□□□□ -0.75
CD44-223	ENST00000526553	USP17L8	P0C7I0	530 aa		10.33	□□□□□ -0.76
CD44-223	ENST00000526553	TRIM32	Q13049	653 aa		10.32	□□□□□ -0.76
CD44-223	ENST00000526553	PTCRA	Q6ISU1	281 aa	Predicted RBP	10.32	□□□□□ -0.76
CD44-223	ENST00000526553	BANK1	Q8NDB2	785 aa		10.32	□□□□□ -0.76
CD44-223	ENST00000526553	MAP10	Q9P2G4	905 aa		10.32	□□□□□ -0.76
CD44-223	ENST00000526553	CD2BP2	O95400	341 aa	Known RBP	10.31	□□□□□ -0.76
CD44-223	ENST00000526553	CTH	P32929	405 aa		10.31	□□□□□ -0.76
CD44-223	ENST00000526553	ZNF598	Q86UK7	904 aa	Known RBP	10.31	□□□□□ -0.76
CD44-223	ENST00000526553	UNC93B1	Q9H1C4	597 aa		10.31	□□□□□ -0.76
CD44-223	ENST00000526553	LRRN4	Q8WUT4	740 aa		10.3	□□□□□ -0.76
CD44-223	ENST00000526553	SOCS7	O14512	581 aa		10.29	□□□□□ -0.76
CD44-223	ENST00000526553	WNT7B	P56706	349 aa		10.28	□□□□□ -0.76
CD44-223	ENST00000526553	ZNF697	Q5TEC3	545 aa		10.28	□□□□□ -0.76
CD44-223	ENST00000526553	ARMC2	Q8NEN0	867 aa		10.26	□□□□□ -0.77
CD44-223	ENST00000526553	HMX1	Q9NP08	348 aa	Predicted RBP	10.26	□□□□□ -0.77
CD44-223	ENST00000526553	SKOR1	P84550	965 aa		10.24	□□□□□ -0.77
CD44-223	ENST00000526553	NR6A1	Q15406	480 aa		10.24	□□□□□ -0.77
CD44-223	ENST00000526553	NBPF14	Q5TI25	921 aa		10.23	□□□□□ -0.77
CD44-223	ENST00000526553	ZNF511	Q8NB15	262 aa		10.23	□□□□□ -0.77
CD44-223	ENST00000526553	BAP1	Q92560	729 aa		10.23	□□□□□ -0.77
CD44-223	ENST00000526553	APBB1	O00213	710 aa		10.22	□□□□□ -0.77
CD44-223	ENST00000526553	SH3BP2	P78314	561 aa		10.22	□□□□□ -0.77
CD44-223	ENST00000526553	PRR20E	P86478	221 aa		10.22	□□□□□ -0.77

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