RNA–Protein interactions for RNA: ENST00000526430.1

NEDD8-204, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 3

Gene NEDD8, Length 286 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-204ENST00000526430 RALGAPBQ86X10 1494 aa16.72■□□□□ 0.27
NEDD8-204ENST00000526430 SF3B2Q13435 895 aaKnown RBP16.7■□□□□ 0.26
NEDD8-204ENST00000526430 NWD2Q9ULI1 1742 aa16.7■□□□□ 0.26
NEDD8-204ENST00000526430 SLIT2O94813 1529 aa16.7■□□□□ 0.26
NEDD8-204ENST00000526430 PXDNQ92626 1479 aa16.69■□□□□ 0.26
NEDD8-204ENST00000526430 HRCP23327 699 aa16.69■□□□□ 0.26
NEDD8-204ENST00000526430 PRAG1Q86YV5 1406 aa16.69■□□□□ 0.26
NEDD8-204ENST00000526430 RGPD1P0DJD0 1748 aa16.68■□□□□ 0.26
NEDD8-204ENST00000526430 ORAI2Q96SN7 254 aa16.67■□□□□ 0.26
NEDD8-204ENST00000526430 PLCH1Q4KWH8 1693 aa16.66■□□□□ 0.26
NEDD8-204ENST00000526430 USP32Q8NFA0 1604 aa16.66■□□□□ 0.26
NEDD8-204ENST00000526430 NEXMIFQ5QGS0 1516 aa16.65■□□□□ 0.26
NEDD8-204ENST00000526430 CDC42BPGQ6DT37 1551 aa16.65■□□□□ 0.26
NEDD8-204ENST00000526430 NPHP3Q7Z494 1330 aa16.65■□□□□ 0.26
NEDD8-204ENST00000526430 RRBP1Q9P2E9 1410 aaKnown RBP16.64■□□□□ 0.25
NEDD8-204ENST00000526430 UNC5CLQ8IV45 518 aa16.64■□□□□ 0.25
NEDD8-204ENST00000526430 KIF1BO60333 1816 aa16.63■□□□□ 0.25
NEDD8-204ENST00000526430 PSDA5PKW4 1024 aaPredicted RBP16.62■□□□□ 0.25
NEDD8-204ENST00000526430 TNS1Q9HBL0 1735 aaKnown RBP16.62■□□□□ 0.25
NEDD8-204ENST00000526430 ABCA3Q99758 1704 aa16.6■□□□□ 0.25
NEDD8-204ENST00000526430 BAG6P46379 1132 aa16.6■□□□□ 0.25
NEDD8-204ENST00000526430 SEPT12Q8IYM1 358 aa16.6■□□□□ 0.25
NEDD8-204ENST00000526430 ONECUT3O60422 494 aaPredicted RBP16.59■□□□□ 0.25
NEDD8-204ENST00000526430 ROBO2Q9HCK4 1378 aa16.59■□□□□ 0.25
NEDD8-204ENST00000526430 HFM1A2PYH4 1435 aa16.59■□□□□ 0.25
NEDD8-204ENST00000526430 KIF1AQ12756 1690 aa16.59■□□□□ 0.25
NEDD8-204ENST00000526430 YY1P25490 414 aa16.58■□□□□ 0.24
NEDD8-204ENST00000526430 FAM50AQ14320 339 aaKnown RBP16.57■□□□□ 0.24
NEDD8-204ENST00000526430 KRT27Q7Z3Y8 459 aa16.57■□□□□ 0.24
NEDD8-204ENST00000526430 CLTCL1P53675 1640 aa16.56■□□□□ 0.24
NEDD8-204ENST00000526430 DISP2A7MBM2 1401 aa16.56■□□□□ 0.24
NEDD8-204ENST00000526430 LRPPRCP42704 1394 aaKnown RBP16.56■□□□□ 0.24
NEDD8-204ENST00000526430 VPS72Q15906 364 aa16.56■□□□□ 0.24
NEDD8-204ENST00000526430 NRAPQ86VF7 1730 aa16.55■□□□□ 0.24
NEDD8-204ENST00000526430 ZNF326Q5BKZ1 582 aaKnown RBP16.54■□□□□ 0.24
NEDD8-204ENST00000526430 ESCO1Q5FWF5 840 aa16.53■□□□□ 0.24
NEDD8-204ENST00000526430 FMN2Q9NZ56 1722 aa16.53■□□□□ 0.24
NEDD8-204ENST00000526430 ROCK1Q13464 1354 aa16.51■□□□□ 0.23
NEDD8-204ENST00000526430 ADGRB2O60241 1585 aa16.51■□□□□ 0.23
NEDD8-204ENST00000526430 PPLO60437 1756 aa16.51■□□□□ 0.23
NEDD8-204ENST00000526430 SPATA31A3Q5VYP0 1347 aa16.51■□□□□ 0.23
NEDD8-204ENST00000526430 FOXO3O43524 673 aa16.51■□□□□ 0.23
NEDD8-204ENST00000526430 R3HDM1Q15032 1099 aaKnown RBP16.51■□□□□ 0.23
NEDD8-204ENST00000526430 NUP155O75694 1391 aa16.51■□□□□ 0.23
NEDD8-204ENST00000526430 RREB1Q92766 1687 aa16.5■□□□□ 0.23
NEDD8-204ENST00000526430 CCDC144AA2RUR9 1427 aa16.5■□□□□ 0.23
NEDD8-204ENST00000526430 RGPD8O14715 1765 aaPredicted RBP16.49■□□□□ 0.23
NEDD8-204ENST00000526430 XPCQ01831 940 aaPredicted RBP16.49■□□□□ 0.23
NEDD8-204ENST00000526430 EN1Q05925 392 aaPredicted RBP16.48■□□□□ 0.23
NEDD8-204ENST00000526430 KNDC1Q76NI1 1749 aa16.48■□□□□ 0.23
NEDD8-204ENST00000526430 THSD7AQ9UPZ6 1657 aa16.47■□□□□ 0.23
NEDD8-204ENST00000526430 NUP188Q5SRE5 1749 aa16.47■□□□□ 0.23
NEDD8-204ENST00000526430 IFT172Q9UG01 1749 aa16.46■□□□□ 0.23
NEDD8-204ENST00000526430 NAIPQ13075 1403 aa16.45■□□□□ 0.22
NEDD8-204ENST00000526430 ITGAEP38570 1179 aa16.45■□□□□ 0.22
NEDD8-204ENST00000526430 TNS3Q68CZ2 1445 aa16.45■□□□□ 0.22
NEDD8-204ENST00000526430 COL14A1Q05707 1796 aaKnown RBP16.44■□□□□ 0.22
NEDD8-204ENST00000526430 VGFO15240 615 aaPredicted RBP16.44■□□□□ 0.22
NEDD8-204ENST00000526430 CHD4Q14839 1912 aa16.44■□□□□ 0.22
NEDD8-204ENST00000526430 PARD3Q8TEW0 1356 aa16.43■□□□□ 0.22
NEDD8-204ENST00000526430 CCDC9Q9Y3X0 531 aaKnown RBP16.43■□□□□ 0.22
NEDD8-204ENST00000526430 TECPR2O15040 1411 aa16.43■□□□□ 0.22
NEDD8-204ENST00000526430 NINLQ9Y2I6 1382 aa16.41■□□□□ 0.22
NEDD8-204ENST00000526430 CAMTA1Q9Y6Y1 1673 aa16.41■□□□□ 0.22
NEDD8-204ENST00000526430 A0A0G2JS52 829 aa16.4■□□□□ 0.22
NEDD8-204ENST00000526430 HAP1P54257 671 aaPredicted RBP16.4■□□□□ 0.22
NEDD8-204ENST00000526430 MYT1Q01538 1121 aa16.4■□□□□ 0.22
NEDD8-204ENST00000526430 IFFO2Q5TF58 517 aa16.4■□□□□ 0.22
NEDD8-204ENST00000526430 FAM98CQ17RN3 349 aaKnown RBP16.39■□□□□ 0.21
NEDD8-204ENST00000526430 DCAF8L1A6NGE4 600 aa16.38■□□□□ 0.21
NEDD8-204ENST00000526430 EZH2Q15910 746 aaKnown RBP16.38■□□□□ 0.21
NEDD8-204ENST00000526430 KRT28Q7Z3Y7 464 aa16.38■□□□□ 0.21
NEDD8-204ENST00000526430 CAMKK2Q96RR4 588 aa16.38■□□□□ 0.21
NEDD8-204ENST00000526430 RPGRIP1LQ68CZ1 1315 aa16.38■□□□□ 0.21
NEDD8-204ENST00000526430 SBNO1A3KN83 1393 aa16.38■□□□□ 0.21
NEDD8-204ENST00000526430 ARHGEF10O15013 1369 aa16.38■□□□□ 0.21
NEDD8-204ENST00000526430 CRYBG1Q9Y4K1 1723 aa16.37■□□□□ 0.21
NEDD8-204ENST00000526430 ALS2Q96Q42 1657 aa16.37■□□□□ 0.21
NEDD8-204ENST00000526430 TRPM3Q9HCF6 1732 aaPredicted RBP16.36■□□□□ 0.21
NEDD8-204ENST00000526430 NRXN1Q9ULB1 1477 aa16.35■□□□□ 0.21
NEDD8-204ENST00000526430 FAM83GA6ND36 823 aa16.35■□□□□ 0.21
NEDD8-204ENST00000526430 PSME1Q06323 249 aa16.35■□□□□ 0.21
NEDD8-204ENST00000526430 CABLES1Q8TDN4 633 aa16.35■□□□□ 0.21
NEDD8-204ENST00000526430 RGPD3A6NKT7 1758 aaPredicted RBP16.34■□□□□ 0.21
NEDD8-204ENST00000526430 RGPD4Q7Z3J3 1758 aa16.34■□□□□ 0.21
NEDD8-204ENST00000526430 NUTM2FA1L443 756 aa16.34■□□□□ 0.21
NEDD8-204ENST00000526430 FAM182BQ5T319 152 aa16.33■□□□□ 0.2
NEDD8-204ENST00000526430 SPATA31A5Q5VU36 1347 aa16.33■□□□□ 0.2
NEDD8-204ENST00000526430 SPATA31A7Q8IWB4 1347 aa16.33■□□□□ 0.2
NEDD8-204ENST00000526430 SPON1Q9HCB6 807 aa16.32■□□□□ 0.2
NEDD8-204ENST00000526430 CASZ1Q86V15 1759 aa16.31■□□□□ 0.2
NEDD8-204ENST00000526430 ABCC11Q96J66 1382 aa16.31■□□□□ 0.2
NEDD8-204ENST00000526430 BTG4Q9NY30 223 aa16.31■□□□□ 0.2
NEDD8-204ENST00000526430 PPP1R1BQ9UD71 204 aaPredicted RBP16.31■□□□□ 0.2
NEDD8-204ENST00000526430 UTRNP46939 3433 aa16.3■□□□□ 0.2
NEDD8-204ENST00000526430 FAM196AQ6ZSG2 479 aa16.3■□□□□ 0.2
NEDD8-204ENST00000526430 WAPLQ7Z5K2 1190 aa16.3■□□□□ 0.2
NEDD8-204ENST00000526430 ZNF784Q8NCA9 323 aaPredicted RBP16.3■□□□□ 0.2
NEDD8-204ENST00000526430 SENP3-EIF4A1A0A087X0R7 540 aa16.29■□□□□ 0.2
NEDD8-204ENST00000526430 TRIM26Q12899 539 aaPredicted RBP16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms