RNA–Protein interactions for RNA: ENST00000526000.5

CD44-221, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 722 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-221ENST00000526000 CLTCL1P53675 1640 aa9.85□□□□□ -0.83
CD44-221ENST00000526000 NEXMIFQ5QGS0 1516 aa9.84□□□□□ -0.83
CD44-221ENST00000526000 HAP1P54257 671 aaPredicted RBP9.84□□□□□ -0.83
CD44-221ENST00000526000 KRT28Q7Z3Y7 464 aa9.84□□□□□ -0.83
CD44-221ENST00000526000 ZRANB1Q9UGI0 708 aa9.84□□□□□ -0.83
CD44-221ENST00000526000 XRN1Q8IZH2 1706 aaKnown RBP9.84□□□□□ -0.83
CD44-221ENST00000526000 NPHP3Q7Z494 1330 aa9.83□□□□□ -0.84
CD44-221ENST00000526000 GJD4Q96KN9 370 aaPredicted RBP9.83□□□□□ -0.84
CD44-221ENST00000526000 MPHOSPH9Q99550 1183 aa9.83□□□□□ -0.84
CD44-221ENST00000526000 CCDC9Q9Y3X0 531 aaKnown RBP9.83□□□□□ -0.84
CD44-221ENST00000526000 PLEKHH1Q9ULM0 1364 aa9.83□□□□□ -0.84
CD44-221ENST00000526000 CDK12Q9NYV4 1490 aaPredicted RBP9.83□□□□□ -0.84
CD44-221ENST00000526000 SPHKAPQ2M3C7 1700 aa9.82□□□□□ -0.84
CD44-221ENST00000526000 ATAD2Q6PL18 1390 aa9.82□□□□□ -0.84
CD44-221ENST00000526000 CFAP70Q5T0N1 1121 aa9.81□□□□□ -0.84
CD44-221ENST00000526000 DEFB132Q7Z7B7 95 aa9.81□□□□□ -0.84
CD44-221ENST00000526000 UNC5CLQ8IV45 518 aa9.8□□□□□ -0.84
CD44-221ENST00000526000 PMFBP1Q8TBY8 1022 aa9.8□□□□□ -0.84
CD44-221ENST00000526000 NHSL1Q5SYE7 1610 aa9.8□□□□□ -0.84
CD44-221ENST00000526000 HFM1A2PYH4 1435 aa9.8□□□□□ -0.84
CD44-221ENST00000526000 ATRNO75882 1429 aa9.8□□□□□ -0.84
CD44-221ENST00000526000 RRBP1Q9P2E9 1410 aaKnown RBP9.8□□□□□ -0.84
CD44-221ENST00000526000 NALCNQ8IZF0 1738 aa9.79□□□□□ -0.84
CD44-221ENST00000526000 A0A0G2JS52 829 aa9.79□□□□□ -0.84
CD44-221ENST00000526000 MYT1Q01538 1121 aa9.79□□□□□ -0.84
CD44-221ENST00000526000 PSME1Q06323 249 aa9.79□□□□□ -0.84
CD44-221ENST00000526000 PHF8Q9UPP1 1060 aa9.79□□□□□ -0.84
CD44-221ENST00000526000 PTCH1Q13635 1447 aa9.79□□□□□ -0.84
CD44-221ENST00000526000 SPATA31A3Q5VYP0 1347 aa9.79□□□□□ -0.84
CD44-221ENST00000526000 BCL9LQ86UU0 1499 aa9.79□□□□□ -0.84
CD44-221ENST00000526000 SEPT12Q8IYM1 358 aa9.78□□□□□ -0.84
CD44-221ENST00000526000 HIRIP3Q9BW71 556 aaPredicted RBP9.78□□□□□ -0.84
CD44-221ENST00000526000 KDM2AQ9Y2K7 1162 aa9.78□□□□□ -0.84
CD44-221ENST00000526000 LRPPRCP42704 1394 aaKnown RBP9.77□□□□□ -0.84
CD44-221ENST00000526000 PRAM1Q96QH2 718 aa9.77□□□□□ -0.85
CD44-221ENST00000526000 POGKQ9P215 609 aa9.77□□□□□ -0.85
CD44-221ENST00000526000 KIF1BO60333 1816 aa9.77□□□□□ -0.85
CD44-221ENST00000526000 ABCC11Q96J66 1382 aa9.76□□□□□ -0.85
CD44-221ENST00000526000 CCDC144AA2RUR9 1427 aa9.76□□□□□ -0.85
CD44-221ENST00000526000 FAM83GA6ND36 823 aa9.76□□□□□ -0.85
CD44-221ENST00000526000 SF3B2Q13435 895 aaKnown RBP9.76□□□□□ -0.85
CD44-221ENST00000526000 FAM182BQ5T319 152 aa9.76□□□□□ -0.85
CD44-221ENST00000526000 CCDC125Q86Z20 511 aa9.76□□□□□ -0.85
CD44-221ENST00000526000 C14orf93Q9H972 538 aaKnown RBP9.76□□□□□ -0.85
CD44-221ENST00000526000 TRAK1Q9UPV9 953 aa9.76□□□□□ -0.85
CD44-221ENST00000526000 MYOM2P54296 1465 aa9.75□□□□□ -0.85
CD44-221ENST00000526000 PXDNQ92626 1479 aa9.74□□□□□ -0.85
CD44-221ENST00000526000 PSDA5PKW4 1024 aaPredicted RBP9.74□□□□□ -0.85
CD44-221ENST00000526000 MINK1Q8N4C8 1332 aaPredicted RBP9.74□□□□□ -0.85
CD44-221ENST00000526000 DHX57Q6P158 1386 aaKnown RBP9.74□□□□□ -0.85
CD44-221ENST00000526000 ANKRD30BQ9BXX2 1392 aa9.74□□□□□ -0.85
CD44-221ENST00000526000 YTHDC2Q9H6S0 1430 aaKnown RBP9.73□□□□□ -0.85
CD44-221ENST00000526000 PAK3O75914 559 aaPredicted RBP9.73□□□□□ -0.85
CD44-221ENST00000526000 VPS72Q15906 364 aa9.73□□□□□ -0.85
CD44-221ENST00000526000 FAM98CQ17RN3 349 aaKnown RBP9.73□□□□□ -0.85
CD44-221ENST00000526000 KRT27Q7Z3Y8 459 aa9.73□□□□□ -0.85
CD44-221ENST00000526000 SPATA31E1Q6ZUB1 1445 aa9.73□□□□□ -0.85
CD44-221ENST00000526000 RALGAPBQ86X10 1494 aa9.72□□□□□ -0.85
CD44-221ENST00000526000 SIRT1Q96EB6 747 aa9.72□□□□□ -0.85
CD44-221ENST00000526000 BTG4Q9NY30 223 aa9.72□□□□□ -0.85
CD44-221ENST00000526000 EN1Q05925 392 aaPredicted RBP9.71□□□□□ -0.86
CD44-221ENST00000526000 NUTM2GQ5VZR2 741 aa9.71□□□□□ -0.86
CD44-221ENST00000526000 NGDNQ8NEJ9 315 aaKnown RBP9.7□□□□□ -0.86
CD44-221ENST00000526000 DCAF11Q8TEB1 546 aa9.7□□□□□ -0.86
CD44-221ENST00000526000 TECPR2O15040 1411 aa9.69□□□□□ -0.86
CD44-221ENST00000526000 ONECUT3O60422 494 aaPredicted RBP9.69□□□□□ -0.86
CD44-221ENST00000526000 PPLO60437 1756 aa9.69□□□□□ -0.86
CD44-221ENST00000526000 SLIT2O94813 1529 aa9.69□□□□□ -0.86
CD44-221ENST00000526000 BLMP54132 1417 aaPredicted RBP9.69□□□□□ -0.86
CD44-221ENST00000526000 CHRNA2Q15822 529 aa9.69□□□□□ -0.86
CD44-221ENST00000526000 PRAG1Q86YV5 1406 aa9.69□□□□□ -0.86
CD44-221ENST00000526000 STRN4Q9NRL3 753 aa9.69□□□□□ -0.86
CD44-221ENST00000526000 LAMC1P11047 1609 aa9.68□□□□□ -0.86
CD44-221ENST00000526000 CDC42BPGQ6DT37 1551 aa9.68□□□□□ -0.86
CD44-221ENST00000526000 PIK3C2GO75747 1445 aa9.68□□□□□ -0.86
CD44-221ENST00000526000 TNS3Q68CZ2 1445 aa9.68□□□□□ -0.86
CD44-221ENST00000526000 PRR36Q9H6K5 1346 aa9.68□□□□□ -0.86
CD44-221ENST00000526000 BAG6P46379 1132 aa9.68□□□□□ -0.86
CD44-221ENST00000526000 ZC3H6P61129 1189 aaKnown RBP9.68□□□□□ -0.86
CD44-221ENST00000526000 GLI3P10071 1580 aa9.67□□□□□ -0.86
CD44-221ENST00000526000 WASLO00401 505 aaPredicted RBP9.67□□□□□ -0.86
CD44-221ENST00000526000 USP35Q9P2H5 1018 aa9.67□□□□□ -0.86
CD44-221ENST00000526000 COL22A1Q8NFW1 1626 aaPredicted RBP9.67□□□□□ -0.86
CD44-221ENST00000526000 SBNO1A3KN83 1393 aa9.66□□□□□ -0.86
CD44-221ENST00000526000 GPRASP1Q5JY77 1395 aa9.66□□□□□ -0.86
CD44-221ENST00000526000 R3HDM1Q15032 1099 aaKnown RBP9.66□□□□□ -0.86
CD44-221ENST00000526000 PRDM11Q9NQV5 511 aa9.66□□□□□ -0.86
CD44-221ENST00000526000 ACIN1Q9UKV3 1341 aaKnown RBP9.65□□□□□ -0.86
CD44-221ENST00000526000 ZBTB7CA1YPR0 619 aa9.65□□□□□ -0.86
CD44-221ENST00000526000 TRIM37O94972 964 aa9.65□□□□□ -0.86
CD44-221ENST00000526000 HRCP23327 699 aa9.65□□□□□ -0.86
CD44-221ENST00000526000 EVA1CP58658 441 aa9.65□□□□□ -0.86
CD44-221ENST00000526000 EZH2Q15910 746 aaKnown RBP9.65□□□□□ -0.86
CD44-221ENST00000526000 NUDT16Q96DE0 195 aaKnown RBP9.65□□□□□ -0.86
CD44-221ENST00000526000 ARHGEF10O15013 1369 aa9.64□□□□□ -0.87
CD44-221ENST00000526000 CDK19Q9BWU1 502 aa9.64□□□□□ -0.87
CD44-221ENST00000526000 RAB3GAP2Q9H2M9 1393 aa9.63□□□□□ -0.87
CD44-221ENST00000526000 SPATA31A5Q5VU36 1347 aa9.63□□□□□ -0.87
CD44-221ENST00000526000 SPATA31A7Q8IWB4 1347 aa9.63□□□□□ -0.87
CD44-221ENST00000526000 NRXN1Q9ULB1 1477 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms