RNA–Protein interactions for RNA: ENST00000524330.1

VPS13B-212, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

TSL 5

Gene VPS13B, Length 218 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-212ENST00000524330 ADAMTSL3P82987 1691 aa13.41□□□□□ -0.26
VPS13B-212ENST00000524330 HDGFL2Q7Z4V5 671 aaPredicted RBP13.41□□□□□ -0.26
VPS13B-212ENST00000524330 NSD2O96028 1365 aa13.41□□□□□ -0.26
VPS13B-212ENST00000524330 SETD1AO15047 1707 aaKnown RBP13.4□□□□□ -0.26
VPS13B-212ENST00000524330 SAFB2Q14151 953 aaKnown RBP eCLIP13.4□□□□□ -0.26
VPS13B-212ENST00000524330 TBX22Q9Y458 520 aa13.4□□□□□ -0.26
VPS13B-212ENST00000524330 INSRP06213 1382 aa13.4□□□□□ -0.26
VPS13B-212ENST00000524330 ANKRD36BQ8N2N9 1353 aa13.4□□□□□ -0.26
VPS13B-212ENST00000524330 MINK1Q8N4C8 1332 aaPredicted RBP13.39□□□□□ -0.27
VPS13B-212ENST00000524330 TECPR2O15040 1411 aa13.39□□□□□ -0.27
VPS13B-212ENST00000524330 AMER1Q5JTC6 1135 aaPredicted RBP13.39□□□□□ -0.27
VPS13B-212ENST00000524330 CEP170BQ9Y4F5 1589 aaPredicted RBP13.39□□□□□ -0.27
VPS13B-212ENST00000524330 SETD1BQ9UPS6 1966 aaKnown RBP13.39□□□□□ -0.27
VPS13B-212ENST00000524330 NRXN3Q9Y4C0 1643 aa13.39□□□□□ -0.27
VPS13B-212ENST00000524330 TULP4Q9NRJ4 1543 aa13.39□□□□□ -0.27
VPS13B-212ENST00000524330 ANKLE2Q86XL3 938 aa13.38□□□□□ -0.27
VPS13B-212ENST00000524330 PNISRQ8TF01 805 aaKnown RBP13.38□□□□□ -0.27
VPS13B-212ENST00000524330 SENP3Q9H4L4 574 aaPredicted RBP13.38□□□□□ -0.27
VPS13B-212ENST00000524330 CPS1P31327 1500 aa13.38□□□□□ -0.27
VPS13B-212ENST00000524330 ZBED9Q6R2W3 1325 aa13.38□□□□□ -0.27
VPS13B-212ENST00000524330 CCDC184Q52MB2 194 aa13.37□□□□□ -0.27
VPS13B-212ENST00000524330 CDK19Q9BWU1 502 aa13.37□□□□□ -0.27
VPS13B-212ENST00000524330 CABP2Q9NPB3 220 aa13.37□□□□□ -0.27
VPS13B-212ENST00000524330 GTF3C3Q9Y5Q9 886 aa13.37□□□□□ -0.27
VPS13B-212ENST00000524330 USP32Q8NFA0 1604 aa13.37□□□□□ -0.27
VPS13B-212ENST00000524330 METP08581 1390 aa13.36□□□□□ -0.27
VPS13B-212ENST00000524330 PIK3R4Q99570 1358 aa13.36□□□□□ -0.27
VPS13B-212ENST00000524330 NEFLP07196 543 aa13.36□□□□□ -0.27
VPS13B-212ENST00000524330 WDR43Q15061 677 aaKnown RBP eCLIP13.36□□□□□ -0.27
VPS13B-212ENST00000524330 MORC1Q86VD1 984 aa13.36□□□□□ -0.27
VPS13B-212ENST00000524330 SLC12A5Q9H2X9 1139 aa13.36□□□□□ -0.27
VPS13B-212ENST00000524330 ADAMTS13Q76LX8 1427 aa13.36□□□□□ -0.27
VPS13B-212ENST00000524330 NSD3Q9BZ95 1437 aa13.36□□□□□ -0.27
VPS13B-212ENST00000524330 ZNF142P52746 1687 aaPredicted RBP13.35□□□□□ -0.27
VPS13B-212ENST00000524330 LTKP29376 864 aa13.35□□□□□ -0.27
VPS13B-212ENST00000524330 PPP2R1AP30153 589 aa13.35□□□□□ -0.27
VPS13B-212ENST00000524330 WASLO00401 505 aaPredicted RBP13.34□□□□□ -0.27
VPS13B-212ENST00000524330 CFAP53Q96M91 514 aa13.34□□□□□ -0.27
VPS13B-212ENST00000524330 MED14O60244 1454 aa13.33□□□□□ -0.28
VPS13B-212ENST00000524330 ATP7BP35670 1465 aa13.33□□□□□ -0.28
VPS13B-212ENST00000524330 WAPLQ7Z5K2 1190 aa13.32□□□□□ -0.28
VPS13B-212ENST00000524330 CARD14Q9BXL6 1004 aa13.32□□□□□ -0.28
VPS13B-212ENST00000524330 SCAF1Q9H7N4 1312 aaKnown RBP13.31□□□□□ -0.28
VPS13B-212ENST00000524330 PTCH1Q13635 1447 aa13.3□□□□□ -0.28
VPS13B-212ENST00000524330 SLC26A8Q96RN1 970 aa13.3□□□□□ -0.28
VPS13B-212ENST00000524330 ZNF692Q9BU19 519 aaPredicted RBP13.3□□□□□ -0.28
VPS13B-212ENST00000524330 AMOTL2Q9Y2J4 779 aa13.3□□□□□ -0.28
VPS13B-212ENST00000524330 CCDC61Q9Y6R9 512 aa13.3□□□□□ -0.28
VPS13B-212ENST00000524330 ADGRB2O60241 1585 aa13.29□□□□□ -0.28
VPS13B-212ENST00000524330 PDE3BQ13370 1112 aa13.29□□□□□ -0.28
VPS13B-212ENST00000524330 A0A1W2PP64 1363 aa13.29□□□□□ -0.28
VPS13B-212ENST00000524330 PLEKHH1Q9ULM0 1364 aa13.29□□□□□ -0.28
VPS13B-212ENST00000524330 NGEFQ8N5V2 710 aa13.28□□□□□ -0.28
VPS13B-212ENST00000524330 CABP1Q9NZU7 370 aa13.28□□□□□ -0.28
VPS13B-212ENST00000524330 NUDT16Q96DE0 195 aaKnown RBP13.27□□□□□ -0.29
VPS13B-212ENST00000524330 POLR3AO14802 1390 aaPredicted RBP13.27□□□□□ -0.29
VPS13B-212ENST00000524330 ROBO2Q9HCK4 1378 aa13.27□□□□□ -0.29
VPS13B-212ENST00000524330 PPIP5K1Q6PFW1 1433 aa13.26□□□□□ -0.29
VPS13B-212ENST00000524330 EDC4Q6P2E9 1401 aaKnown RBP13.25□□□□□ -0.29
VPS13B-212ENST00000524330 NUDCQ9Y266 331 aa13.25□□□□□ -0.29
VPS13B-212ENST00000524330 BLMP54132 1417 aaPredicted RBP13.24□□□□□ -0.29
VPS13B-212ENST00000524330 PELP1Q8IZL8 1130 aaKnown RBP13.24□□□□□ -0.29
VPS13B-212ENST00000524330 NPHP4O75161 1426 aaPredicted RBP13.23□□□□□ -0.29
VPS13B-212ENST00000524330 ANKRD26Q9UPS8 1709 aa13.23□□□□□ -0.29
VPS13B-212ENST00000524330 PNNQ9H307 717 aaKnown RBP13.23□□□□□ -0.29
VPS13B-212ENST00000524330 CDC42BPGQ6DT37 1551 aa13.23□□□□□ -0.29
VPS13B-212ENST00000524330 PTPRUQ92729 1446 aa13.22□□□□□ -0.29
VPS13B-212ENST00000524330 XRN1Q8IZH2 1706 aaKnown RBP13.22□□□□□ -0.29
VPS13B-212ENST00000524330 KIF20BQ96Q89 1820 aa13.22□□□□□ -0.29
VPS13B-212ENST00000524330 ITSN1Q15811 1721 aa13.22□□□□□ -0.29
VPS13B-212ENST00000524330 SMG6Q86US8 1419 aaKnown RBP13.22□□□□□ -0.29
VPS13B-212ENST00000524330 PLEKHG3A1L390 1219 aa13.21□□□□□ -0.29
VPS13B-212ENST00000524330 ADAMTS8Q9UP79 889 aa13.21□□□□□ -0.29
VPS13B-212ENST00000524330 CD163L1Q9NR16 1453 aa13.21□□□□□ -0.3
VPS13B-212ENST00000524330 CPSF1Q10570 1443 aaKnown RBP13.21□□□□□ -0.3
VPS13B-212ENST00000524330 ANKARQ7Z5J8 1434 aa13.21□□□□□ -0.3
VPS13B-212ENST00000524330 FYB1O15117 783 aa13.2□□□□□ -0.3
VPS13B-212ENST00000524330 TNNT2P45379 298 aaPredicted RBP13.2□□□□□ -0.3
VPS13B-212ENST00000524330 MTHFSP49914 203 aa13.2□□□□□ -0.3
VPS13B-212ENST00000524330 ERICH6BQ5W0A0 696 aa13.2□□□□□ -0.3
VPS13B-212ENST00000524330 COG3Q96JB2 828 aa13.2□□□□□ -0.3
VPS13B-212ENST00000524330 GGNBP2Q9H3C7 697 aa13.19□□□□□ -0.3
VPS13B-212ENST00000524330 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.19□□□□□ -0.3
VPS13B-212ENST00000524330 CHD2O14647 1828 aaKnown RBP13.18□□□□□ -0.3
VPS13B-212ENST00000524330 NEFMP07197 916 aa13.18□□□□□ -0.3
VPS13B-212ENST00000524330 KCNA6P17658 529 aa13.18□□□□□ -0.3
VPS13B-212ENST00000524330 AKAP12Q02952 1782 aa13.17□□□□□ -0.3
VPS13B-212ENST00000524330 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.17□□□□□ -0.3
VPS13B-212ENST00000524330 MON2Q7Z3U7 1717 aa13.16□□□□□ -0.3
VPS13B-212ENST00000524330 TTC21AQ8NDW8 1320 aa13.16□□□□□ -0.3
VPS13B-212ENST00000524330 NGDNQ8NEJ9 315 aaKnown RBP13.16□□□□□ -0.3
VPS13B-212ENST00000524330 TOPAZ1Q8N9V7 1692 aa13.15□□□□□ -0.3
VPS13B-212ENST00000524330 NCBP3Q53F19 620 aaKnown RBP13.15□□□□□ -0.3
VPS13B-212ENST00000524330 C14orf37Q86TY3 774 aa13.15□□□□□ -0.3
VPS13B-212ENST00000524330 RUNDC1Q96C34 613 aa13.15□□□□□ -0.3
VPS13B-212ENST00000524330 ACEP12821 1306 aa13.14□□□□□ -0.31
VPS13B-212ENST00000524330 PRR36Q9H6K5 1346 aa13.14□□□□□ -0.31
VPS13B-212ENST00000524330 FKBP8Q14318 412 aa13.14□□□□□ -0.31
VPS13B-212ENST00000524330 SUPT16HQ9Y5B9 1047 aaKnown RBP13.14□□□□□ -0.31
VPS13B-212ENST00000524330 AATKQ6ZMQ8 1374 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms