RNA–Protein interactions for RNA: ENST00000523867.5

HDAC9-227, Transcript of histone deacetylase 9, humanhuman

TSL 1 (best)

Gene HDAC9, Length 2,640 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-227ENST00000523867 PLCD4Q9BRC7 762 aa9.43□□□□□ -0.9
HDAC9-227ENST00000523867 TRPM1Q7Z4N2 1603 aa9.43□□□□□ -0.9
HDAC9-227ENST00000523867 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.42□□□□□ -0.9
HDAC9-227ENST00000523867 PANK3Q9H999 370 aa9.42□□□□□ -0.9
HDAC9-227ENST00000523867 GPRASP1Q5JY77 1395 aa9.42□□□□□ -0.9
HDAC9-227ENST00000523867 PLIN1O60240 522 aa9.42□□□□□ -0.9
HDAC9-227ENST00000523867 COL17A1Q9UMD9 1497 aaPredicted RBP9.42□□□□□ -0.9
HDAC9-227ENST00000523867 ARAP3Q8WWN8 1544 aa9.41□□□□□ -0.9
HDAC9-227ENST00000523867 TESK2Q96S53 571 aa9.41□□□□□ -0.9
HDAC9-227ENST00000523867 INSRP06213 1382 aa9.41□□□□□ -0.9
HDAC9-227ENST00000523867 DISP3Q9P2K9 1392 aa9.41□□□□□ -0.9
HDAC9-227ENST00000523867 TMF1P82094 1093 aa9.41□□□□□ -0.9
HDAC9-227ENST00000523867 MAP7D2Q96T17 732 aa9.4□□□□□ -0.9
HDAC9-227ENST00000523867 A2MP01023 1474 aa9.4□□□□□ -0.9
HDAC9-227ENST00000523867 BLMP54132 1417 aaPredicted RBP9.4□□□□□ -0.9
HDAC9-227ENST00000523867 SAMD9LQ8IVG5 1584 aa9.4□□□□□ -0.91
HDAC9-227ENST00000523867 ERBINQ96RT1 1412 aa9.4□□□□□ -0.91
HDAC9-227ENST00000523867 CHRM1P11229 460 aaPredicted RBP9.39□□□□□ -0.91
HDAC9-227ENST00000523867 CRBNQ96SW2 442 aa9.39□□□□□ -0.91
HDAC9-227ENST00000523867 PLA2R1Q13018 1463 aa9.39□□□□□ -0.91
HDAC9-227ENST00000523867 CD109Q6YHK3 1445 aa9.39□□□□□ -0.91
HDAC9-227ENST00000523867 MFAP1P55081 439 aaKnown RBP9.39□□□□□ -0.91
HDAC9-227ENST00000523867 ZMYM4Q5VZL5 1548 aa9.39□□□□□ -0.91
HDAC9-227ENST00000523867 PRDM15P57071 1507 aaPredicted RBP9.38□□□□□ -0.91
HDAC9-227ENST00000523867 PLEKHH2Q8IVE3 1493 aa9.38□□□□□ -0.91
HDAC9-227ENST00000523867 LAMC1P11047 1609 aa9.38□□□□□ -0.91
HDAC9-227ENST00000523867 SLC4A3P48751 1232 aa9.37□□□□□ -0.91
HDAC9-227ENST00000523867 SMAP1Q8IYB5 467 aaPredicted RBP9.37□□□□□ -0.91
HDAC9-227ENST00000523867 CHMP4BQ9H444 224 aaKnown RBP9.37□□□□□ -0.91
HDAC9-227ENST00000523867 PREX2Q70Z35 1606 aa9.37□□□□□ -0.91
HDAC9-227ENST00000523867 ADAMTS8Q9UP79 889 aa9.37□□□□□ -0.91
HDAC9-227ENST00000523867 CDC42BPBQ9Y5S2 1711 aa9.37□□□□□ -0.91
HDAC9-227ENST00000523867 RNF216Q9NWF9 866 aaPredicted RBP9.36□□□□□ -0.91
HDAC9-227ENST00000523867 SYCP2Q9BX26 1530 aa9.36□□□□□ -0.91
HDAC9-227ENST00000523867 EIF2AK4Q9P2K8 1649 aaKnown RBP9.36□□□□□ -0.91
HDAC9-227ENST00000523867 UNC13BO14795 1591 aa9.36□□□□□ -0.91
HDAC9-227ENST00000523867 FRAT2O75474 233 aaPredicted RBP9.36□□□□□ -0.91
HDAC9-227ENST00000523867 ARHGAP5Q13017 1502 aa9.36□□□□□ -0.91
HDAC9-227ENST00000523867 TERF1P54274 439 aa9.35□□□□□ -0.91
HDAC9-227ENST00000523867 WDR43Q15061 677 aaKnown RBP eCLIP9.35□□□□□ -0.91
HDAC9-227ENST00000523867 SKAP1Q86WV1 359 aa9.35□□□□□ -0.91
HDAC9-227ENST00000523867 KNSTRNQ9Y448 316 aa9.35□□□□□ -0.91
HDAC9-227ENST00000523867 RGS3P49796 1198 aa9.35□□□□□ -0.91
HDAC9-227ENST00000523867 C20orf194Q5TEA3 1177 aa9.35□□□□□ -0.91
HDAC9-227ENST00000523867 NEO1Q92859 1461 aa9.35□□□□□ -0.91
HDAC9-227ENST00000523867 ABCA9Q8IUA7 1624 aa9.34□□□□□ -0.91
HDAC9-227ENST00000523867 MAST1Q9Y2H9 1570 aa9.34□□□□□ -0.91
HDAC9-227ENST00000523867 PPP2R1AP30153 589 aa9.34□□□□□ -0.91
HDAC9-227ENST00000523867 ANAPC15P60006 121 aa9.34□□□□□ -0.91
HDAC9-227ENST00000523867 UTP14CQ5TAP6 766 aaKnown RBP9.34□□□□□ -0.91
HDAC9-227ENST00000523867 FBXO41Q8TF61 875 aa9.34□□□□□ -0.91
HDAC9-227ENST00000523867 IQGAP3Q86VI3 1631 aa9.33□□□□□ -0.92
HDAC9-227ENST00000523867 ADAMTSL3P82987 1691 aa9.33□□□□□ -0.92
HDAC9-227ENST00000523867 TMCO4Q5TGY1 634 aa9.33□□□□□ -0.92
HDAC9-227ENST00000523867 CENPQQ7L2Z9 268 aaPredicted RBP9.33□□□□□ -0.92
HDAC9-227ENST00000523867 IFNLR1Q8IU57 520 aaPredicted RBP9.33□□□□□ -0.92
HDAC9-227ENST00000523867 IPO4Q8TEX9 1081 aaKnown RBP9.33□□□□□ -0.92
HDAC9-227ENST00000523867 ATP10AO60312 1499 aa9.33□□□□□ -0.92
HDAC9-227ENST00000523867 MYO5CQ9NQX4 1742 aa9.33□□□□□ -0.92
HDAC9-227ENST00000523867 DUSP27Q5VZP5 1158 aa9.33□□□□□ -0.92
HDAC9-227ENST00000523867 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.33□□□□□ -0.92
HDAC9-227ENST00000523867 FSD2A1L4K1 749 aa9.32□□□□□ -0.92
HDAC9-227ENST00000523867 GOLGA2Q08379 1002 aa9.32□□□□□ -0.92
HDAC9-227ENST00000523867 CDCA8Q53HL2 280 aa9.32□□□□□ -0.92
HDAC9-227ENST00000523867 MTERF4Q7Z6M4 381 aaKnown RBP9.32□□□□□ -0.92
HDAC9-227ENST00000523867 ATF5Q9Y2D1 282 aaPredicted RBP9.32□□□□□ -0.92
HDAC9-227ENST00000523867 KDM2BQ8NHM5 1336 aa9.32□□□□□ -0.92
HDAC9-227ENST00000523867 MAGI2Q86UL8 1455 aa9.32□□□□□ -0.92
HDAC9-227ENST00000523867 GRIPAP1Q4V328 841 aa9.32□□□□□ -0.92
HDAC9-227ENST00000523867 DUOX2Q9NRD8 1548 aa9.32□□□□□ -0.92
HDAC9-227ENST00000523867 PLXNC1O60486 1568 aa9.31□□□□□ -0.92
HDAC9-227ENST00000523867 PLEKHH1Q9ULM0 1364 aa9.31□□□□□ -0.92
HDAC9-227ENST00000523867 E9PSI1 815 aa9.31□□□□□ -0.92
HDAC9-227ENST00000523867 CANXP27824 592 aaKnown RBP9.31□□□□□ -0.92
HDAC9-227ENST00000523867 TTC37Q6PGP7 1564 aa9.31□□□□□ -0.92
HDAC9-227ENST00000523867 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.31□□□□□ -0.92
HDAC9-227ENST00000523867 CCDC82Q8N4S0 544 aa9.31□□□□□ -0.92
HDAC9-227ENST00000523867 GZF1Q9H116 711 aaPredicted RBP9.31□□□□□ -0.92
HDAC9-227ENST00000523867 ISY1Q9ULR0 285 aaKnown RBP9.31□□□□□ -0.92
HDAC9-227ENST00000523867 CFAP74Q9C0B2 1584 aa9.3□□□□□ -0.92
HDAC9-227ENST00000523867 GOLGA6L3A6NEY3 463 aa9.3□□□□□ -0.92
HDAC9-227ENST00000523867 GTF2E1P29083 439 aaPredicted RBP9.3□□□□□ -0.92
HDAC9-227ENST00000523867 XRCC6P12956 609 aaKnown RBP eCLIP9.3□□□□□ -0.92
HDAC9-227ENST00000523867 ZNF521Q96K83 1311 aa9.3□□□□□ -0.92
HDAC9-227ENST00000523867 ESPNB1AK53 854 aa9.29□□□□□ -0.92
HDAC9-227ENST00000523867 FAM161AQ3B820 660 aa9.29□□□□□ -0.92
HDAC9-227ENST00000523867 PTPRMP28827 1452 aa9.29□□□□□ -0.92
HDAC9-227ENST00000523867 RNF17Q9BXT8 1623 aaKnown RBP9.29□□□□□ -0.92
HDAC9-227ENST00000523867 PTMSP20962 102 aa9.28□□□□□ -0.92
HDAC9-227ENST00000523867 SLFN5Q08AF3 891 aa9.28□□□□□ -0.92
HDAC9-227ENST00000523867 STAC3Q96MF2 364 aa9.28□□□□□ -0.92
HDAC9-227ENST00000523867 POGKQ9P215 609 aa9.28□□□□□ -0.92
HDAC9-227ENST00000523867 MRE11P49959 708 aa9.27□□□□□ -0.93
HDAC9-227ENST00000523867 OS9Q13438 667 aaPredicted RBP9.27□□□□□ -0.93
HDAC9-227ENST00000523867 EFCAB2Q5VUJ9 269 aa9.27□□□□□ -0.93
HDAC9-227ENST00000523867 CCDC146Q8IYE0 955 aa9.27□□□□□ -0.93
HDAC9-227ENST00000523867 SCAF11Q99590 1463 aaKnown RBP9.27□□□□□ -0.93
HDAC9-227ENST00000523867 PIK3C2GO75747 1445 aa9.27□□□□□ -0.93
HDAC9-227ENST00000523867 C8orf34Q49A92 452 aa9.27□□□□□ -0.93
HDAC9-227ENST00000523867 ASXL1Q8IXJ9 1541 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms