RNA–Protein interactions for RNA: ENST00000523588.1

CPNE3-207, Transcript of copine 3, humanhuman

TSL 2

Gene CPNE3, Length 426 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-207ENST00000523588 RNF19BQ6ZMZ0 732 aa12.04□□□□□ -0.48
CPNE3-207ENST00000523588 TLL1O43897 1013 aa12.03□□□□□ -0.48
CPNE3-207ENST00000523588 KCNC4Q03721 635 aa12.03□□□□□ -0.48
CPNE3-207ENST00000523588 Q3C1V9 767 aa12.03□□□□□ -0.48
CPNE3-207ENST00000523588 SYMPKQ92797 1274 aaKnown RBP12.02□□□□□ -0.49
CPNE3-207ENST00000523588 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.02□□□□□ -0.49
CPNE3-207ENST00000523588 FMNL1O95466 1100 aaPredicted RBP12.01□□□□□ -0.49
CPNE3-207ENST00000523588 NKX2-3Q8TAU0 364 aa12.01□□□□□ -0.49
CPNE3-207ENST00000523588 LILRB3O75022 631 aa12□□□□□ -0.49
CPNE3-207ENST00000523588 QPCTQ16769 361 aa12□□□□□ -0.49
CPNE3-207ENST00000523588 CSPP1Q1MSJ5 1256 aa12□□□□□ -0.49
CPNE3-207ENST00000523588 PRPF38BQ5VTL8 546 aaKnown RBP12□□□□□ -0.49
CPNE3-207ENST00000523588 FBXO31Q5XUX0 539 aaPredicted RBP12□□□□□ -0.49
CPNE3-207ENST00000523588 CABLES1Q8TDN4 633 aa12□□□□□ -0.49
CPNE3-207ENST00000523588 PCMTD1Q96MG8 357 aaPredicted RBP12□□□□□ -0.49
CPNE3-207ENST00000523588 HRCP23327 699 aa11.99□□□□□ -0.49
CPNE3-207ENST00000523588 IFFO2Q5TF58 517 aa11.99□□□□□ -0.49
CPNE3-207ENST00000523588 SPSB2Q99619 263 aa11.99□□□□□ -0.49
CPNE3-207ENST00000523588 ADH1BP00325 375 aa11.98□□□□□ -0.49
CPNE3-207ENST00000523588 MTMR2Q13614 643 aa11.98□□□□□ -0.49
CPNE3-207ENST00000523588 FAM160A2Q8N612 972 aaPredicted RBP11.98□□□□□ -0.49
CPNE3-207ENST00000523588 ZBTB3Q9H5J0 574 aa11.98□□□□□ -0.49
CPNE3-207ENST00000523588 C6orf229H3BNL8 230 aa11.97□□□□□ -0.49
CPNE3-207ENST00000523588 USB1Q9BQ65 265 aaKnown RBP11.97□□□□□ -0.49
CPNE3-207ENST00000523588 PLA2G2EQ9NZK7 142 aa11.97□□□□□ -0.49
CPNE3-207ENST00000523588 RTL5Q5HYW3 569 aaPredicted RBP11.96□□□□□ -0.49
CPNE3-207ENST00000523588 RETREG3Q86VR2 466 aa11.96□□□□□ -0.49
CPNE3-207ENST00000523588 SPDYE5A6NIY4 337 aa11.95□□□□□ -0.5
CPNE3-207ENST00000523588 PPP2R2DQ66LE6 453 aa11.95□□□□□ -0.5
CPNE3-207ENST00000523588 MSS51Q4VC12 460 aa11.94□□□□□ -0.5
CPNE3-207ENST00000523588 ATP1B4Q9UN42 357 aaPredicted RBP11.93□□□□□ -0.5
CPNE3-207ENST00000523588 NUTM2BA6NNL0 878 aaPredicted RBP11.92□□□□□ -0.5
CPNE3-207ENST00000523588 NUTM2EB1AL46 878 aaPredicted RBP11.92□□□□□ -0.5
CPNE3-207ENST00000523588 CFAP99D6REC4 459 aa11.92□□□□□ -0.5
CPNE3-207ENST00000523588 NUTM2DQ5VT03 806 aaPredicted RBP11.92□□□□□ -0.5
CPNE3-207ENST00000523588 NUTM2AQ8IVF1 878 aaPredicted RBP11.92□□□□□ -0.5
CPNE3-207ENST00000523588 PRR7Q8TB68 274 aa11.92□□□□□ -0.5
CPNE3-207ENST00000523588 SLC6A16Q9GZN6 736 aa11.91□□□□□ -0.5
CPNE3-207ENST00000523588 PRDM9Q9NQV7 894 aa11.91□□□□□ -0.5
CPNE3-207ENST00000523588 S1PR4O95977 384 aa11.89□□□□□ -0.51
CPNE3-207ENST00000523588 RFC5P40937 340 aa11.88□□□□□ -0.51
CPNE3-207ENST00000523588 MMP16P51512 607 aa11.88□□□□□ -0.51
CPNE3-207ENST00000523588 DXOO77932 396 aaKnown RBP11.87□□□□□ -0.51
CPNE3-207ENST00000523588 DESI1Q6ICB0 168 aa11.87□□□□□ -0.51
CPNE3-207ENST00000523588 JUNDP17535 347 aa11.86□□□□□ -0.51
CPNE3-207ENST00000523588 PPP1R18Q6NYC8 613 aa11.86□□□□□ -0.51
CPNE3-207ENST00000523588 A0A0G2JS52 829 aa11.84□□□□□ -0.51
CPNE3-207ENST00000523588 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.84□□□□□ -0.51
CPNE3-207ENST00000523588 RNF223E7ERA6 249 aa11.83□□□□□ -0.52
CPNE3-207ENST00000523588 PPEF1O14829 653 aaPredicted RBP11.82□□□□□ -0.52
CPNE3-207ENST00000523588 PER1O15534 1290 aaPredicted RBP11.81□□□□□ -0.52
CPNE3-207ENST00000523588 GGCXP38435 758 aa11.81□□□□□ -0.52
CPNE3-207ENST00000523588 CTDSPL2Q05D32 466 aa11.81□□□□□ -0.52
CPNE3-207ENST00000523588 LYPD8Q6UX82 237 aa11.81□□□□□ -0.52
CPNE3-207ENST00000523588 TMEM259Q4ZIN3 620 aa11.8□□□□□ -0.52
CPNE3-207ENST00000523588 HELBQ8NG08 1087 aaPredicted RBP11.8□□□□□ -0.52
CPNE3-207ENST00000523588 TSC1Q92574 1164 aa11.8□□□□□ -0.52
CPNE3-207ENST00000523588 AP1G2O75843 785 aa11.79□□□□□ -0.52
CPNE3-207ENST00000523588 PTPRNQ16849 979 aa11.79□□□□□ -0.52
CPNE3-207ENST00000523588 ANKLE1Q8NAG6 615 aa11.79□□□□□ -0.52
CPNE3-207ENST00000523588 FCF1Q9Y324 198 aaKnown RBP11.78□□□□□ -0.52
CPNE3-207ENST00000523588 USP17L8P0C7I0 530 aa11.76□□□□□ -0.53
CPNE3-207ENST00000523588 PLA2G2CQ5R387 149 aa11.76□□□□□ -0.53
CPNE3-207ENST00000523588 BANK1Q8NDB2 785 aa11.76□□□□□ -0.53
CPNE3-207ENST00000523588 NUDT12Q9BQG2 462 aa11.76□□□□□ -0.53
CPNE3-207ENST00000523588 CCNYL3P0C7X3 344 aa11.75□□□□□ -0.53
CPNE3-207ENST00000523588 LRRN4Q8WUT4 740 aa11.75□□□□□ -0.53
CPNE3-207ENST00000523588 F12P00748 615 aaPredicted RBP11.74□□□□□ -0.53
CPNE3-207ENST00000523588 EVA1BQ9NVM1 165 aa11.74□□□□□ -0.53
CPNE3-207ENST00000523588 EMID1Q96A84 441 aaPredicted RBP11.73□□□□□ -0.53
CPNE3-207ENST00000523588 PTCRAQ6ISU1 281 aaPredicted RBP11.72□□□□□ -0.53
CPNE3-207ENST00000523588 CCDC24Q8N4L8 307 aa11.72□□□□□ -0.53
CPNE3-207ENST00000523588 KCNH2Q12809 1159 aa11.71□□□□□ -0.53
CPNE3-207ENST00000523588 HMX1Q9NP08 348 aaPredicted RBP11.71□□□□□ -0.53
CPNE3-207ENST00000523588 SNRKQ9NRH2 765 aa11.71□□□□□ -0.53
CPNE3-207ENST00000523588 MAP10Q9P2G4 905 aa11.7□□□□□ -0.54
CPNE3-207ENST00000523588 LIAT1Q6ZQX7 453 aa11.68□□□□□ -0.54
CPNE3-207ENST00000523588 MTMR14Q8NCE2 650 aa11.68□□□□□ -0.54
CPNE3-207ENST00000523588 CTHP32929 405 aa11.67□□□□□ -0.54
CPNE3-207ENST00000523588 SOCS7O14512 581 aa11.66□□□□□ -0.54
CPNE3-207ENST00000523588 NR6A1Q15406 480 aa11.66□□□□□ -0.54
CPNE3-207ENST00000523588 EPS8L1Q8TE68 723 aa11.66□□□□□ -0.54
CPNE3-207ENST00000523588 GJD4Q96KN9 370 aaPredicted RBP11.66□□□□□ -0.54
CPNE3-207ENST00000523588 TRIM34Q9BYJ4 488 aa11.66□□□□□ -0.54
CPNE3-207ENST00000523588 RPIAP49247 311 aa11.65□□□□□ -0.54
CPNE3-207ENST00000523588 MCM6Q14566 821 aa11.65□□□□□ -0.54
CPNE3-207ENST00000523588 UNC93B1Q9H1C4 597 aa11.65□□□□□ -0.54
CPNE3-207ENST00000523588 GTF3C3Q9Y5Q9 886 aa11.65□□□□□ -0.54
CPNE3-207ENST00000523588 SLC19A1P41440 591 aa11.64□□□□□ -0.55
CPNE3-207ENST00000523588 PRKD2Q9BZL6 878 aa11.63□□□□□ -0.55
CPNE3-207ENST00000523588 ZBTB24O43167 697 aaPredicted RBP11.62□□□□□ -0.55
CPNE3-207ENST00000523588 V9GY48 417 aaPredicted RBP11.62□□□□□ -0.55
CPNE3-207ENST00000523588 RGS20O76081 388 aa11.61□□□□□ -0.55
CPNE3-207ENST00000523588 FLIIQ13045 1269 aa11.61□□□□□ -0.55
CPNE3-207ENST00000523588 TRIM32Q13049 653 aa11.61□□□□□ -0.55
CPNE3-207ENST00000523588 SPRYD7Q5W111 196 aa11.59□□□□□ -0.55
CPNE3-207ENST00000523588 GPR37L1O60883 481 aa11.58□□□□□ -0.56
CPNE3-207ENST00000523588 CD2BP2O95400 341 aaKnown RBP11.58□□□□□ -0.56
CPNE3-207ENST00000523588 BAP1Q92560 729 aa11.58□□□□□ -0.56
CPNE3-207ENST00000523588 FKBPLQ9UIM3 349 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms