RNA–Protein interactions for RNA: ENST00000523441.1

SDCBP-211, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 543 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-211ENST00000523441 PTCH1Q13635 1447 aa17.79■□□□□ 0.44
SDCBP-211ENST00000523441 LAMC1P11047 1609 aa17.79■□□□□ 0.44
SDCBP-211ENST00000523441 FNBP4Q8N3X1 1017 aaPredicted RBP17.78■□□□□ 0.44
SDCBP-211ENST00000523441 COL22A1Q8NFW1 1626 aaPredicted RBP17.77■□□□□ 0.44
SDCBP-211ENST00000523441 BRWD3Q6RI45 1802 aa17.75■□□□□ 0.43
SDCBP-211ENST00000523441 FOXO3O43524 673 aa17.74■□□□□ 0.43
SDCBP-211ENST00000523441 DEFB132Q7Z7B7 95 aa17.74■□□□□ 0.43
SDCBP-211ENST00000523441 GJD4Q96KN9 370 aaPredicted RBP17.74■□□□□ 0.43
SDCBP-211ENST00000523441 BCL9LQ86UU0 1499 aa17.74■□□□□ 0.43
SDCBP-211ENST00000523441 MYOM2P54296 1465 aa17.72■□□□□ 0.43
SDCBP-211ENST00000523441 NPHP3Q7Z494 1330 aa17.72■□□□□ 0.43
SDCBP-211ENST00000523441 CCDC125Q86Z20 511 aa17.71■□□□□ 0.43
SDCBP-211ENST00000523441 STK26Q9P289 416 aa17.71■□□□□ 0.43
SDCBP-211ENST00000523441 PXDNQ92626 1479 aa17.7■□□□□ 0.42
SDCBP-211ENST00000523441 VGFO15240 615 aaPredicted RBP17.7■□□□□ 0.42
SDCBP-211ENST00000523441 HAP1P54257 671 aaPredicted RBP17.69■□□□□ 0.42
SDCBP-211ENST00000523441 SF3B2Q13435 895 aaKnown RBP17.69■□□□□ 0.42
SDCBP-211ENST00000523441 CCDC9Q9Y3X0 531 aaKnown RBP17.69■□□□□ 0.42
SDCBP-211ENST00000523441 GLI3P10071 1580 aa17.69■□□□□ 0.42
SDCBP-211ENST00000523441 PPLO60437 1756 aa17.68■□□□□ 0.42
SDCBP-211ENST00000523441 RALGAPBQ86X10 1494 aa17.68■□□□□ 0.42
SDCBP-211ENST00000523441 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.67■□□□□ 0.42
SDCBP-211ENST00000523441 HFM1A2PYH4 1435 aa17.67■□□□□ 0.42
SDCBP-211ENST00000523441 A0A0G2JS52 829 aa17.67■□□□□ 0.42
SDCBP-211ENST00000523441 PSDA5PKW4 1024 aaPredicted RBP17.67■□□□□ 0.42
SDCBP-211ENST00000523441 MYT1Q01538 1121 aa17.67■□□□□ 0.42
SDCBP-211ENST00000523441 BLMP54132 1417 aaPredicted RBP17.66■□□□□ 0.42
SDCBP-211ENST00000523441 WAPLQ7Z5K2 1190 aa17.66■□□□□ 0.42
SDCBP-211ENST00000523441 UNC5CLQ8IV45 518 aa17.66■□□□□ 0.42
SDCBP-211ENST00000523441 CDC42BPGQ6DT37 1551 aa17.66■□□□□ 0.42
SDCBP-211ENST00000523441 NAIPQ13075 1403 aa17.64■□□□□ 0.42
SDCBP-211ENST00000523441 LMOD2Q6P5Q4 547 aa17.64■□□□□ 0.41
SDCBP-211ENST00000523441 SEPT12Q8IYM1 358 aa17.64■□□□□ 0.41
SDCBP-211ENST00000523441 CABLES1Q8TDN4 633 aa17.64■□□□□ 0.41
SDCBP-211ENST00000523441 RGPD8O14715 1765 aaPredicted RBP17.63■□□□□ 0.41
SDCBP-211ENST00000523441 LRPPRCP42704 1394 aaKnown RBP17.62■□□□□ 0.41
SDCBP-211ENST00000523441 USP32Q8NFA0 1604 aa17.61■□□□□ 0.41
SDCBP-211ENST00000523441 PLCH1Q4KWH8 1693 aa17.61■□□□□ 0.41
SDCBP-211ENST00000523441 RGL3Q3MIN7 710 aa17.6■□□□□ 0.41
SDCBP-211ENST00000523441 TMEM132EQ6IEE7 984 aa17.6■□□□□ 0.41
SDCBP-211ENST00000523441 KRT28Q7Z3Y7 464 aa17.6■□□□□ 0.41
SDCBP-211ENST00000523441 PLEKHH1Q9ULM0 1364 aa17.6■□□□□ 0.41
SDCBP-211ENST00000523441 SLIT2O94813 1529 aa17.6■□□□□ 0.41
SDCBP-211ENST00000523441 FMN2Q9NZ56 1722 aa17.59■□□□□ 0.41
SDCBP-211ENST00000523441 SPATA31A3Q5VYP0 1347 aa17.59■□□□□ 0.41
SDCBP-211ENST00000523441 RPGRIP1LQ68CZ1 1315 aa17.58■□□□□ 0.4
SDCBP-211ENST00000523441 ADGRF5Q8IZF2 1346 aa17.58■□□□□ 0.4
SDCBP-211ENST00000523441 SLC4A1APQ9BWU0 796 aaKnown RBP17.58■□□□□ 0.4
SDCBP-211ENST00000523441 LRP5O75197 1615 aa17.58■□□□□ 0.4
SDCBP-211ENST00000523441 KRT27Q7Z3Y8 459 aa17.57■□□□□ 0.4
SDCBP-211ENST00000523441 KIF1AQ12756 1690 aa17.57■□□□□ 0.4
SDCBP-211ENST00000523441 IFT172Q9UG01 1749 aa17.56■□□□□ 0.4
SDCBP-211ENST00000523441 FAM182BQ5T319 152 aa17.55■□□□□ 0.4
SDCBP-211ENST00000523441 ABCA3Q99758 1704 aa17.55■□□□□ 0.4
SDCBP-211ENST00000523441 PRAG1Q86YV5 1406 aa17.55■□□□□ 0.4
SDCBP-211ENST00000523441 VPS72Q15906 364 aa17.54■□□□□ 0.4
SDCBP-211ENST00000523441 CCDC144AA2RUR9 1427 aa17.54■□□□□ 0.4
SDCBP-211ENST00000523441 BAG6P46379 1132 aa17.53■□□□□ 0.4
SDCBP-211ENST00000523441 SAFB2Q14151 953 aaKnown RBP eCLIP17.53■□□□□ 0.4
SDCBP-211ENST00000523441 FAM98CQ17RN3 349 aaKnown RBP17.53■□□□□ 0.4
SDCBP-211ENST00000523441 RRBP1Q9P2E9 1410 aaKnown RBP17.53■□□□□ 0.4
SDCBP-211ENST00000523441 NWD2Q9ULI1 1742 aa17.52■□□□□ 0.4
SDCBP-211ENST00000523441 HRCP23327 699 aa17.52■□□□□ 0.4
SDCBP-211ENST00000523441 EN1Q05925 392 aaPredicted RBP17.52■□□□□ 0.4
SDCBP-211ENST00000523441 TNS3Q68CZ2 1445 aa17.52■□□□□ 0.4
SDCBP-211ENST00000523441 KNDC1Q76NI1 1749 aa17.52■□□□□ 0.39
SDCBP-211ENST00000523441 PHF8Q9UPP1 1060 aa17.51■□□□□ 0.39
SDCBP-211ENST00000523441 PSME1Q06323 249 aa17.5■□□□□ 0.39
SDCBP-211ENST00000523441 R3HDM1Q15032 1099 aaKnown RBP17.5■□□□□ 0.39
SDCBP-211ENST00000523441 PMFBP1Q8TBY8 1022 aa17.49■□□□□ 0.39
SDCBP-211ENST00000523441 FAM83GA6ND36 823 aa17.48■□□□□ 0.39
SDCBP-211ENST00000523441 RGPD1P0DJD0 1748 aa17.47■□□□□ 0.39
SDCBP-211ENST00000523441 BTG4Q9NY30 223 aa17.47■□□□□ 0.39
SDCBP-211ENST00000523441 NRAPQ86VF7 1730 aa17.47■□□□□ 0.39
SDCBP-211ENST00000523441 TECPR2O15040 1411 aa17.47■□□□□ 0.39
SDCBP-211ENST00000523441 YTHDC2Q9H6S0 1430 aaKnown RBP17.47■□□□□ 0.39
SDCBP-211ENST00000523441 ABCC11Q96J66 1382 aa17.45■□□□□ 0.38
SDCBP-211ENST00000523441 ONECUT3O60422 494 aaPredicted RBP17.43■□□□□ 0.38
SDCBP-211ENST00000523441 ARHGEF10O15013 1369 aa17.42■□□□□ 0.38
SDCBP-211ENST00000523441 EZH2Q15910 746 aaKnown RBP17.42■□□□□ 0.38
SDCBP-211ENST00000523441 NRXN1Q9ULB1 1477 aa17.42■□□□□ 0.38
SDCBP-211ENST00000523441 TNS1Q9HBL0 1735 aaKnown RBP17.41■□□□□ 0.38
SDCBP-211ENST00000523441 PRAM1Q96QH2 718 aa17.41■□□□□ 0.38
SDCBP-211ENST00000523441 ANKRD30BQ9BXX2 1392 aa17.4■□□□□ 0.38
SDCBP-211ENST00000523441 COL14A1Q05707 1796 aaKnown RBP17.4■□□□□ 0.38
SDCBP-211ENST00000523441 PIK3C2GO75747 1445 aa17.4■□□□□ 0.38
SDCBP-211ENST00000523441 HIRIP3Q9BW71 556 aaPredicted RBP17.4■□□□□ 0.38
SDCBP-211ENST00000523441 POGKQ9P215 609 aa17.4■□□□□ 0.38
SDCBP-211ENST00000523441 SBNO1A3KN83 1393 aa17.4■□□□□ 0.38
SDCBP-211ENST00000523441 SPATA31E1Q6ZUB1 1445 aa17.39■□□□□ 0.38
SDCBP-211ENST00000523441 PAK3O75914 559 aaPredicted RBP17.39■□□□□ 0.37
SDCBP-211ENST00000523441 CFAP70Q5T0N1 1121 aa17.39■□□□□ 0.37
SDCBP-211ENST00000523441 TRPM3Q9HCF6 1732 aaPredicted RBP17.38■□□□□ 0.37
SDCBP-211ENST00000523441 TRIM37O94972 964 aa17.37■□□□□ 0.37
SDCBP-211ENST00000523441 DHX57Q6P158 1386 aaKnown RBP17.37■□□□□ 0.37
SDCBP-211ENST00000523441 STRN4Q9NRL3 753 aa17.36■□□□□ 0.37
SDCBP-211ENST00000523441 YY1P25490 414 aa17.35■□□□□ 0.37
SDCBP-211ENST00000523441 PRDM11Q9NQV5 511 aa17.35■□□□□ 0.37
SDCBP-211ENST00000523441 USP35Q9P2H5 1018 aa17.35■□□□□ 0.37
SDCBP-211ENST00000523441 MINK1Q8N4C8 1332 aaPredicted RBP17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms