RNA–Protein interactions for RNA: ENST00000522843.5

SDCBP-210, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 764 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-210ENST00000522843 SWT1Q5T5J6 900 aaKnown RBP11.95□□□□□ -0.5
SDCBP-210ENST00000522843 PADI6Q6TGC4 694 aa11.95□□□□□ -0.5
SDCBP-210ENST00000522843 PAXIP1Q6ZW49 1069 aaPredicted RBP11.95□□□□□ -0.5
SDCBP-210ENST00000522843 SLF2Q8IX21 1173 aa11.95□□□□□ -0.5
SDCBP-210ENST00000522843 CFAP44Q96MT7 982 aa11.95□□□□□ -0.5
SDCBP-210ENST00000522843 ZCCHC11Q5TAX3 1644 aaKnown RBP11.95□□□□□ -0.5
SDCBP-210ENST00000522843 CARMIL2Q6F5E8 1435 aa11.94□□□□□ -0.5
SDCBP-210ENST00000522843 KIF21BO75037 1637 aa11.93□□□□□ -0.5
SDCBP-210ENST00000522843 GGCXP38435 758 aa11.93□□□□□ -0.5
SDCBP-210ENST00000522843 LMTK3Q96Q04 1460 aa11.92□□□□□ -0.5
SDCBP-210ENST00000522843 COPS2P61201 443 aa11.92□□□□□ -0.5
SDCBP-210ENST00000522843 SUPT5HO00267 1087 aaKnown RBP11.91□□□□□ -0.5
SDCBP-210ENST00000522843 SLC4A3P48751 1232 aa11.91□□□□□ -0.5
SDCBP-210ENST00000522843 TMUB1Q9BVT8 246 aa11.91□□□□□ -0.5
SDCBP-210ENST00000522843 KIF27Q86VH2 1401 aa11.91□□□□□ -0.5
SDCBP-210ENST00000522843 IQGAP2Q13576 1575 aa11.91□□□□□ -0.5
SDCBP-210ENST00000522843 EYA1Q99502 592 aa11.9□□□□□ -0.5
SDCBP-210ENST00000522843 PDZRN3Q9UPQ7 1066 aa11.9□□□□□ -0.5
SDCBP-210ENST00000522843 MAGI3Q5TCQ9 1506 aa11.9□□□□□ -0.5
SDCBP-210ENST00000522843 CARMIL1Q5VZK9 1371 aa11.9□□□□□ -0.5
SDCBP-210ENST00000522843 PTPRMP28827 1452 aa11.89□□□□□ -0.51
SDCBP-210ENST00000522843 WDR7Q9Y4E6 1490 aa11.89□□□□□ -0.51
SDCBP-210ENST00000522843 ADAMTSL3P82987 1691 aa11.88□□□□□ -0.51
SDCBP-210ENST00000522843 ILDR2Q71H61 639 aa11.88□□□□□ -0.51
SDCBP-210ENST00000522843 ZPR1O75312 459 aa11.87□□□□□ -0.51
SDCBP-210ENST00000522843 PRR14Q9BWN1 585 aa11.87□□□□□ -0.51
SDCBP-210ENST00000522843 CD109Q6YHK3 1445 aa11.86□□□□□ -0.51
SDCBP-210ENST00000522843 CFAP43Q8NDM7 1665 aa11.85□□□□□ -0.51
SDCBP-210ENST00000522843 UGGT2Q9NYU1 1516 aa11.85□□□□□ -0.51
SDCBP-210ENST00000522843 PCF11O94913 1555 aaKnown RBP11.84□□□□□ -0.51
SDCBP-210ENST00000522843 KIAA0556O60303 1618 aa11.84□□□□□ -0.51
SDCBP-210ENST00000522843 PCDHB3Q9Y5E6 796 aa11.83□□□□□ -0.52
SDCBP-210ENST00000522843 ARAP3Q8WWN8 1544 aa11.82□□□□□ -0.52
SDCBP-210ENST00000522843 SOCS7O14512 581 aa11.82□□□□□ -0.52
SDCBP-210ENST00000522843 ZNF787Q6DD87 383 aa11.82□□□□□ -0.52
SDCBP-210ENST00000522843 MADDQ8WXG6 1647 aa11.79□□□□□ -0.52
SDCBP-210ENST00000522843 BLOC1S3Q6QNY0 202 aa11.79□□□□□ -0.52
SDCBP-210ENST00000522843 BCORL1Q5H9F3 1711 aa11.79□□□□□ -0.52
SDCBP-210ENST00000522843 RNF223E7ERA6 249 aa11.78□□□□□ -0.52
SDCBP-210ENST00000522843 SLC19A1P41440 591 aa11.78□□□□□ -0.52
SDCBP-210ENST00000522843 MLLT3P42568 568 aaPredicted RBP11.78□□□□□ -0.52
SDCBP-210ENST00000522843 ARHGEF1Q92888 912 aaKnown RBP11.78□□□□□ -0.52
SDCBP-210ENST00000522843 ABCA8O94911 1581 aa11.78□□□□□ -0.52
SDCBP-210ENST00000522843 DNAJB2P25686 324 aa11.77□□□□□ -0.53
SDCBP-210ENST00000522843 HSPA2P54652 639 aa11.77□□□□□ -0.53
SDCBP-210ENST00000522843 PTGDRQ13258 359 aa11.77□□□□□ -0.53
SDCBP-210ENST00000522843 RBM46Q8TBY0 533 aaKnown RBP11.76□□□□□ -0.53
SDCBP-210ENST00000522843 DISP3Q9P2K9 1392 aa11.76□□□□□ -0.53
SDCBP-210ENST00000522843 RAPGEF3O95398 923 aa11.75□□□□□ -0.53
SDCBP-210ENST00000522843 FRMPD1Q5SYB0 1578 aa11.75□□□□□ -0.53
SDCBP-210ENST00000522843 TRIM67Q6ZTA4 783 aa11.74□□□□□ -0.53
SDCBP-210ENST00000522843 TMEM134Q9H6X4 195 aa11.74□□□□□ -0.53
SDCBP-210ENST00000522843 EMID1Q96A84 441 aaPredicted RBP11.73□□□□□ -0.53
SDCBP-210ENST00000522843 ADGRG1Q9Y653 693 aa11.73□□□□□ -0.53
SDCBP-210ENST00000522843 RIMS1Q86UR5 1692 aaKnown RBP11.72□□□□□ -0.53
SDCBP-210ENST00000522843 RAPGEF2Q9Y4G8 1499 aa11.72□□□□□ -0.53
SDCBP-210ENST00000522843 ACTN4O43707 911 aaKnown RBP11.72□□□□□ -0.53
SDCBP-210ENST00000522843 KMT5BQ4FZB7 885 aa11.72□□□□□ -0.53
SDCBP-210ENST00000522843 SPRYD7Q5W111 196 aa11.72□□□□□ -0.53
SDCBP-210ENST00000522843 TSHZ2Q9NRE2 1034 aa11.72□□□□□ -0.53
SDCBP-210ENST00000522843 ANKLE1Q8NAG6 615 aa11.71□□□□□ -0.53
SDCBP-210ENST00000522843 TLL1O43897 1013 aa11.7□□□□□ -0.54
SDCBP-210ENST00000522843 ZNF598Q86UK7 904 aaKnown RBP11.7□□□□□ -0.54
SDCBP-210ENST00000522843 ABCA9Q8IUA7 1624 aa11.69□□□□□ -0.54
SDCBP-210ENST00000522843 RCCD1A6NED2 376 aa11.69□□□□□ -0.54
SDCBP-210ENST00000522843 PHLDB1Q86UU1 1377 aa11.68□□□□□ -0.54
SDCBP-210ENST00000522843 DGAT1O75907 488 aa11.68□□□□□ -0.54
SDCBP-210ENST00000522843 PKDCCQ504Y2 493 aa11.68□□□□□ -0.54
SDCBP-210ENST00000522843 ZNF775Q96BV0 537 aaPredicted RBP11.68□□□□□ -0.54
SDCBP-210ENST00000522843 SIGLEC1Q9BZZ2 1709 aa11.68□□□□□ -0.54
SDCBP-210ENST00000522843 ATP10BO94823 1461 aa11.68□□□□□ -0.54
SDCBP-210ENST00000522843 ARID4BQ4LE39 1312 aaPredicted RBP11.67□□□□□ -0.54
SDCBP-210ENST00000522843 ARID3CA6NKF2 412 aa11.67□□□□□ -0.54
SDCBP-210ENST00000522843 PPEF1O14829 653 aaPredicted RBP11.67□□□□□ -0.54
SDCBP-210ENST00000522843 S1PR4O95977 384 aa11.67□□□□□ -0.54
SDCBP-210ENST00000522843 CFHP08603 1231 aa11.67□□□□□ -0.54
SDCBP-210ENST00000522843 PRR20EP86478 221 aa11.67□□□□□ -0.54
SDCBP-210ENST00000522843 PRR20CP86479 221 aa11.67□□□□□ -0.54
SDCBP-210ENST00000522843 PRR20DP86480 221 aa11.67□□□□□ -0.54
SDCBP-210ENST00000522843 PRR20BP86481 221 aa11.67□□□□□ -0.54
SDCBP-210ENST00000522843 PRR20AP86496 221 aa11.67□□□□□ -0.54
SDCBP-210ENST00000522843 KCNV2Q8TDN2 545 aa11.67□□□□□ -0.54
SDCBP-210ENST00000522843 ARHGEF40Q8TER5 1519 aa11.66□□□□□ -0.54
SDCBP-210ENST00000522843 NEO1Q92859 1461 aa11.66□□□□□ -0.54
SDCBP-210ENST00000522843 NUTM2FA1L443 756 aa11.66□□□□□ -0.54
SDCBP-210ENST00000522843 LIAT1Q6ZQX7 453 aa11.66□□□□□ -0.54
SDCBP-210ENST00000522843 SPATA31D1Q6ZQQ2 1576 aa11.66□□□□□ -0.54
SDCBP-210ENST00000522843 MYT1Q01538 1121 aa11.65□□□□□ -0.54
SDCBP-210ENST00000522843 FAM161AQ3B820 660 aa11.65□□□□□ -0.54
SDCBP-210ENST00000522843 CTTNBP2Q8WZ74 1663 aa11.65□□□□□ -0.55
SDCBP-210ENST00000522843 GOLGA3Q08378 1498 aa11.64□□□□□ -0.55
SDCBP-210ENST00000522843 NR1I2O75469 434 aa11.64□□□□□ -0.55
SDCBP-210ENST00000522843 SLC10A3P09131 477 aa11.64□□□□□ -0.55
SDCBP-210ENST00000522843 ADH1BP00325 375 aa11.63□□□□□ -0.55
SDCBP-210ENST00000522843 ZNF697Q5TEC3 545 aa11.63□□□□□ -0.55
SDCBP-210ENST00000522843 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.62□□□□□ -0.55
SDCBP-210ENST00000522843 RICTORQ6R327 1708 aa11.62□□□□□ -0.55
SDCBP-210ENST00000522843 FCHSD2O94868 740 aa11.61□□□□□ -0.55
SDCBP-210ENST00000522843 STRCQ7RTU9 1775 aa11.6□□□□□ -0.55
SDCBP-210ENST00000522843 GDF9O60383 454 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms