RNA–Protein interactions for RNA: ENST00000522122.1

SYNPO-205, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SYNPO, Length 5,098 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-205ENST00000522122 FOXD4L5Q5VV16 416 aaPredicted RBP17.03■□□□□ 0.32
SYNPO-205ENST00000522122 FOXD4L4Q8WXT5 416 aaPredicted RBP17.03■□□□□ 0.32
SYNPO-205ENST00000522122 PRAG1Q86YV5 1406 aa17.03■□□□□ 0.32
SYNPO-205ENST00000522122 SPATA31E1Q6ZUB1 1445 aa17.03■□□□□ 0.32
SYNPO-205ENST00000522122 LRPPRCP42704 1394 aaKnown RBP17.03■□□□□ 0.32
SYNPO-205ENST00000522122 TRHP20396 242 aaPredicted RBP17.03■□□□□ 0.32
SYNPO-205ENST00000522122 RILPL2Q969X0 211 aa17.02■□□□□ 0.32
SYNPO-205ENST00000522122 ZNF330Q9Y3S2 320 aaPredicted RBP17.02■□□□□ 0.32
SYNPO-205ENST00000522122 ZNF608Q9ULD9 1512 aaPredicted RBP17.02■□□□□ 0.32
SYNPO-205ENST00000522122 GORABQ5T7V8 394 aa17.02■□□□□ 0.31
SYNPO-205ENST00000522122 C20orf194Q5TEA3 1177 aa17.02■□□□□ 0.31
SYNPO-205ENST00000522122 KDM6BO15054 1643 aa17.02■□□□□ 0.31
SYNPO-205ENST00000522122 KIF16BQ96L93 1317 aa17.02■□□□□ 0.31
SYNPO-205ENST00000522122 API5Q9BZZ5 524 aaKnown RBP17.02■□□□□ 0.31
SYNPO-205ENST00000522122 NUP160Q12769 1436 aa17.01■□□□□ 0.31
SYNPO-205ENST00000522122 C22orf23Q9BZE7 217 aa17.01■□□□□ 0.31
SYNPO-205ENST00000522122 TULP1O00294 542 aaPredicted RBP17.01■□□□□ 0.31
SYNPO-205ENST00000522122 CHMP3Q9Y3E7 222 aa17.01■□□□□ 0.31
SYNPO-205ENST00000522122 FAM135AQ9P2D6 1515 aa17.01■□□□□ 0.31
SYNPO-205ENST00000522122 HSP90B1P14625 803 aaKnown RBP17■□□□□ 0.31
SYNPO-205ENST00000522122 REC8O95072 547 aa17■□□□□ 0.31
SYNPO-205ENST00000522122 PDZRN3Q9UPQ7 1066 aa17■□□□□ 0.31
SYNPO-205ENST00000522122 FAM43AQ8N2R8 423 aa16.99■□□□□ 0.31
SYNPO-205ENST00000522122 TCP11L2Q8N4U5 519 aa16.99■□□□□ 0.31
SYNPO-205ENST00000522122 ARID3AQ99856 593 aa16.99■□□□□ 0.31
SYNPO-205ENST00000522122 CFAP70Q5T0N1 1121 aa16.99■□□□□ 0.31
SYNPO-205ENST00000522122 DUSP27Q5VZP5 1158 aa16.99■□□□□ 0.31
SYNPO-205ENST00000522122 WDR63Q8IWG1 891 aa16.98■□□□□ 0.31
SYNPO-205ENST00000522122 SCAF11Q99590 1463 aaKnown RBP16.97■□□□□ 0.31
SYNPO-205ENST00000522122 TPM4P67936 248 aa16.96■□□□□ 0.31
SYNPO-205ENST00000522122 LNPKQ9C0E8 428 aa16.96■□□□□ 0.31
SYNPO-205ENST00000522122 ATP6V1DQ9Y5K8 247 aa16.96■□□□□ 0.31
SYNPO-205ENST00000522122 KIF3AQ9Y496 699 aa16.96■□□□□ 0.31
SYNPO-205ENST00000522122 TAF7LQ5H9L4 462 aa16.95■□□□□ 0.3
SYNPO-205ENST00000522122 SKAP1Q86WV1 359 aa16.95■□□□□ 0.3
SYNPO-205ENST00000522122 DISP1Q96F81 1524 aa16.95■□□□□ 0.3
SYNPO-205ENST00000522122 CT47B1P0C2W7 299 aaPredicted RBP16.95■□□□□ 0.3
SYNPO-205ENST00000522122 INSRP06213 1382 aa16.95■□□□□ 0.3
SYNPO-205ENST00000522122 KDM5CP41229 1560 aa16.94■□□□□ 0.3
SYNPO-205ENST00000522122 COL17A1Q9UMD9 1497 aaPredicted RBP16.94■□□□□ 0.3
SYNPO-205ENST00000522122 GNAI1P63096 354 aa16.94■□□□□ 0.3
SYNPO-205ENST00000522122 MTHFSP49914 203 aa16.94■□□□□ 0.3
SYNPO-205ENST00000522122 CCDC34Q96HJ3 373 aa16.93■□□□□ 0.3
SYNPO-205ENST00000522122 GGNBP2Q9H3C7 697 aa16.93■□□□□ 0.3
SYNPO-205ENST00000522122 FOXD4L6Q3SYB3 417 aaPredicted RBP16.93■□□□□ 0.3
SYNPO-205ENST00000522122 FOXD4L3Q6VB84 417 aaPredicted RBP16.93■□□□□ 0.3
SYNPO-205ENST00000522122 ASXL1Q8IXJ9 1541 aa16.92■□□□□ 0.3
SYNPO-205ENST00000522122 HSP90AA2PQ14568 343 aaPredicted RBP16.92■□□□□ 0.3
SYNPO-205ENST00000522122 WWC1Q8IX03 1113 aa16.92■□□□□ 0.3
SYNPO-205ENST00000522122 MRE11P49959 708 aa16.92■□□□□ 0.3
SYNPO-205ENST00000522122 TEFQ10587 303 aa16.92■□□□□ 0.3
SYNPO-205ENST00000522122 ANO8Q9HCE9 1232 aaPredicted RBP16.92■□□□□ 0.3
SYNPO-205ENST00000522122 ZMYM4Q5VZL5 1548 aa16.91■□□□□ 0.3
SYNPO-205ENST00000522122 DUOX2Q9NRD8 1548 aa16.91■□□□□ 0.3
SYNPO-205ENST00000522122 ATP10BO94823 1461 aa16.91■□□□□ 0.3
SYNPO-205ENST00000522122 AFAP1Q8N556 730 aa16.91■□□□□ 0.3
SYNPO-205ENST00000522122 MVPQ14764 893 aaKnown RBP16.91■□□□□ 0.3
SYNPO-205ENST00000522122 TMEM132EQ6IEE7 984 aa16.9■□□□□ 0.3
SYNPO-205ENST00000522122 DIAPH3Q9NSV4 1193 aa16.9■□□□□ 0.3
SYNPO-205ENST00000522122 SF3A1Q15459 793 aaKnown RBP16.9■□□□□ 0.3
SYNPO-205ENST00000522122 BLMP54132 1417 aaPredicted RBP16.89■□□□□ 0.3
SYNPO-205ENST00000522122 NSD3Q9BZ95 1437 aa16.89■□□□□ 0.3
SYNPO-205ENST00000522122 NUCB2P80303 420 aa16.89■□□□□ 0.29
SYNPO-205ENST00000522122 RUFY2Q8WXA3 655 aa16.89■□□□□ 0.29
SYNPO-205ENST00000522122 INTS3Q68E01 1043 aaKnown RBP16.89■□□□□ 0.29
SYNPO-205ENST00000522122 HMOX1P09601 288 aa16.89■□□□□ 0.29
SYNPO-205ENST00000522122 TRAK2O60296 914 aa16.88■□□□□ 0.29
SYNPO-205ENST00000522122 CABP2Q9NPB3 220 aa16.88■□□□□ 0.29
SYNPO-205ENST00000522122 ANO2Q9NQ90 1003 aa16.88■□□□□ 0.29
SYNPO-205ENST00000522122 TARBP1Q13395 1621 aaKnown RBP16.87■□□□□ 0.29
SYNPO-205ENST00000522122 SYCP2Q9BX26 1530 aa16.87■□□□□ 0.29
SYNPO-205ENST00000522122 H3BQV1 296 aa16.87■□□□□ 0.29
SYNPO-205ENST00000522122 FKBP5Q13451 457 aaPredicted RBP16.87■□□□□ 0.29
SYNPO-205ENST00000522122 IFFO2Q5TF58 517 aa16.87■□□□□ 0.29
SYNPO-205ENST00000522122 EIF2S2P20042 333 aaKnown RBP16.87■□□□□ 0.29
SYNPO-205ENST00000522122 C1orf141Q5JVX7 400 aa16.87■□□□□ 0.29
SYNPO-205ENST00000522122 ISY1Q9ULR0 285 aaKnown RBP16.87■□□□□ 0.29
SYNPO-205ENST00000522122 ZKSCAN1P17029 563 aaPredicted RBP16.87■□□□□ 0.29
SYNPO-205ENST00000522122 FAM184AQ8NB25 1140 aa16.87■□□□□ 0.29
SYNPO-205ENST00000522122 EXOSC9Q06265 439 aaKnown RBP16.86■□□□□ 0.29
SYNPO-205ENST00000522122 C9orf78Q9NZ63 289 aaPredicted RBP16.86■□□□□ 0.29
SYNPO-205ENST00000522122 MBD5Q9P267 1494 aa16.86■□□□□ 0.29
SYNPO-205ENST00000522122 CHMP4CQ96CF2 233 aa16.86■□□□□ 0.29
SYNPO-205ENST00000522122 PIK3C2GO75747 1445 aa16.85■□□□□ 0.29
SYNPO-205ENST00000522122 GPRASP1Q5JY77 1395 aa16.85■□□□□ 0.29
SYNPO-205ENST00000522122 KDM5BQ9UGL1 1544 aa16.85■□□□□ 0.29
SYNPO-205ENST00000522122 C8orf34Q49A92 452 aa16.85■□□□□ 0.29
SYNPO-205ENST00000522122 NECTIN2Q92692 538 aa16.85■□□□□ 0.29
SYNPO-205ENST00000522122 RARSP54136 660 aaKnown RBP16.84■□□□□ 0.29
SYNPO-205ENST00000522122 TESK2Q96S53 571 aa16.84■□□□□ 0.29
SYNPO-205ENST00000522122 PER1O15534 1290 aaPredicted RBP16.84■□□□□ 0.29
SYNPO-205ENST00000522122 CDC45O75419 566 aa16.84■□□□□ 0.29
SYNPO-205ENST00000522122 NEXNQ0ZGT2 675 aa16.84■□□□□ 0.29
SYNPO-205ENST00000522122 SLC12A5Q9H2X9 1139 aa16.84■□□□□ 0.29
SYNPO-205ENST00000522122 GOLGA6L19H0YKK7 550 aa16.83■□□□□ 0.28
SYNPO-205ENST00000522122 NOB1Q9ULX3 412 aaKnown RBP16.83■□□□□ 0.28
SYNPO-205ENST00000522122 EIF4G3O43432 1585 aaKnown RBP16.83■□□□□ 0.28
SYNPO-205ENST00000522122 BECN2A8MW95 431 aa16.82■□□□□ 0.28
SYNPO-205ENST00000522122 TSPYL4Q9UJ04 414 aa16.82■□□□□ 0.28
SYNPO-205ENST00000522122 IFIT2P09913 472 aaKnown RBP16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms