RNA–Protein interactions for RNA: ENST00000517354.5

CPNE3-201, Transcript of copine 3, humanhuman

TSL 4

Gene CPNE3, Length 566 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-201ENST00000517354 PRPF38BQ5VTL8 546 aaKnown RBP11.99□□□□□ -0.49
CPNE3-201ENST00000517354 MTMR2Q13614 643 aa11.98□□□□□ -0.49
CPNE3-201ENST00000517354 SPDYE5A6NIY4 337 aa11.97□□□□□ -0.49
CPNE3-201ENST00000517354 FMNL1O95466 1100 aaPredicted RBP11.97□□□□□ -0.49
CPNE3-201ENST00000517354 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.97□□□□□ -0.49
CPNE3-201ENST00000517354 PCDHGC3Q9UN70 934 aa11.97□□□□□ -0.49
CPNE3-201ENST00000517354 CABLES1Q8TDN4 633 aa11.96□□□□□ -0.49
CPNE3-201ENST00000517354 MTRQ99707 1265 aa11.96□□□□□ -0.49
CPNE3-201ENST00000517354 IL21Q9HBE4 155 aa11.96□□□□□ -0.49
CPNE3-201ENST00000517354 LILRB3O75022 631 aa11.95□□□□□ -0.5
CPNE3-201ENST00000517354 HRCP23327 699 aa11.95□□□□□ -0.5
CPNE3-201ENST00000517354 QPCTQ16769 361 aa11.95□□□□□ -0.5
CPNE3-201ENST00000517354 SYMPKQ92797 1274 aaKnown RBP11.94□□□□□ -0.5
CPNE3-201ENST00000517354 SALL2Q9Y467 1007 aaPredicted RBP11.94□□□□□ -0.5
CPNE3-201ENST00000517354 TSC1Q92574 1164 aa11.93□□□□□ -0.5
CPNE3-201ENST00000517354 ZPR1O75312 459 aa11.92□□□□□ -0.5
CPNE3-201ENST00000517354 TMEM259Q4ZIN3 620 aa11.92□□□□□ -0.5
CPNE3-201ENST00000517354 RTL5Q5HYW3 569 aaPredicted RBP11.92□□□□□ -0.5
CPNE3-201ENST00000517354 BRICD5Q6PL45 260 aa11.92□□□□□ -0.5
CPNE3-201ENST00000517354 USB1Q9BQ65 265 aaKnown RBP11.92□□□□□ -0.5
CPNE3-201ENST00000517354 RFC5P40937 340 aa11.91□□□□□ -0.5
CPNE3-201ENST00000517354 PPP2R2DQ66LE6 453 aa11.91□□□□□ -0.5
CPNE3-201ENST00000517354 RETREG3Q86VR2 466 aa11.91□□□□□ -0.5
CPNE3-201ENST00000517354 SPSB2Q99619 263 aa11.91□□□□□ -0.5
CPNE3-201ENST00000517354 AP1G2O75843 785 aa11.9□□□□□ -0.5
CPNE3-201ENST00000517354 TJAP1Q5JTD0 557 aa11.9□□□□□ -0.5
CPNE3-201ENST00000517354 KCNC4Q03721 635 aa11.89□□□□□ -0.51
CPNE3-201ENST00000517354 RNF19BQ6ZMZ0 732 aa11.89□□□□□ -0.51
CPNE3-201ENST00000517354 PRR7Q8TB68 274 aa11.89□□□□□ -0.51
CPNE3-201ENST00000517354 HELBQ8NG08 1087 aaPredicted RBP11.88□□□□□ -0.51
CPNE3-201ENST00000517354 ZNF516Q92618 1163 aa11.88□□□□□ -0.51
CPNE3-201ENST00000517354 THAP11Q96EK4 314 aa11.86□□□□□ -0.51
CPNE3-201ENST00000517354 ADH1BP00325 375 aa11.85□□□□□ -0.51
CPNE3-201ENST00000517354 FLIIQ13045 1269 aa11.84□□□□□ -0.51
CPNE3-201ENST00000517354 BANK1Q8NDB2 785 aa11.84□□□□□ -0.51
CPNE3-201ENST00000517354 CFAP99D6REC4 459 aa11.83□□□□□ -0.52
CPNE3-201ENST00000517354 TLL1O43897 1013 aa11.82□□□□□ -0.52
CPNE3-201ENST00000517354 FBXO31Q5XUX0 539 aaPredicted RBP11.82□□□□□ -0.52
CPNE3-201ENST00000517354 SLC6A16Q9GZN6 736 aa11.82□□□□□ -0.52
CPNE3-201ENST00000517354 ERICH6Q7L0X2 663 aa11.81□□□□□ -0.52
CPNE3-201ENST00000517354 NKX2-3Q8TAU0 364 aa11.81□□□□□ -0.52
CPNE3-201ENST00000517354 CTDSPL2Q05D32 466 aa11.8□□□□□ -0.52
CPNE3-201ENST00000517354 MSS51Q4VC12 460 aa11.8□□□□□ -0.52
CPNE3-201ENST00000517354 DESI1Q6ICB0 168 aa11.8□□□□□ -0.52
CPNE3-201ENST00000517354 FAM160A2Q8N612 972 aaPredicted RBP11.8□□□□□ -0.52
CPNE3-201ENST00000517354 ITGBL1O95965 494 aaPredicted RBP11.79□□□□□ -0.52
CPNE3-201ENST00000517354 JUNDP17535 347 aa11.79□□□□□ -0.52
CPNE3-201ENST00000517354 GGCXP38435 758 aa11.79□□□□□ -0.52
CPNE3-201ENST00000517354 APBB1O00213 710 aa11.78□□□□□ -0.52
CPNE3-201ENST00000517354 PRM3Q9NNZ6 103 aa11.78□□□□□ -0.52
CPNE3-201ENST00000517354 C14orf37Q86TY3 774 aa11.77□□□□□ -0.53
CPNE3-201ENST00000517354 USP17L8P0C7I0 530 aa11.76□□□□□ -0.53
CPNE3-201ENST00000517354 LYPD8Q6UX82 237 aa11.76□□□□□ -0.53
CPNE3-201ENST00000517354 S1PR4O95977 384 aa11.75□□□□□ -0.53
CPNE3-201ENST00000517354 CCDC24Q8N4L8 307 aa11.75□□□□□ -0.53
CPNE3-201ENST00000517354 SNRKQ9NRH2 765 aa11.75□□□□□ -0.53
CPNE3-201ENST00000517354 PLSCR2Q9NRY7 297 aa11.75□□□□□ -0.53
CPNE3-201ENST00000517354 CTHP32929 405 aa11.73□□□□□ -0.53
CPNE3-201ENST00000517354 MMP16P51512 607 aa11.73□□□□□ -0.53
CPNE3-201ENST00000517354 PRDM9Q9NQV7 894 aa11.73□□□□□ -0.53
CPNE3-201ENST00000517354 RAD21O60216 631 aa11.72□□□□□ -0.53
CPNE3-201ENST00000517354 DXOO77932 396 aaKnown RBP11.72□□□□□ -0.53
CPNE3-201ENST00000517354 UBTFP17480 764 aaKnown RBP11.72□□□□□ -0.53
CPNE3-201ENST00000517354 PTPRNQ16849 979 aa11.72□□□□□ -0.53
CPNE3-201ENST00000517354 LRRN4Q8WUT4 740 aa11.72□□□□□ -0.53
CPNE3-201ENST00000517354 NUDT12Q9BQG2 462 aa11.72□□□□□ -0.53
CPNE3-201ENST00000517354 PLA2G2EQ9NZK7 142 aa11.72□□□□□ -0.53
CPNE3-201ENST00000517354 PER1O15534 1290 aaPredicted RBP11.7□□□□□ -0.54
CPNE3-201ENST00000517354 MCM6Q14566 821 aa11.7□□□□□ -0.54
CPNE3-201ENST00000517354 PNMA1Q8ND90 353 aa11.7□□□□□ -0.54
CPNE3-201ENST00000517354 CCNYL3P0C7X3 344 aa11.69□□□□□ -0.54
CPNE3-201ENST00000517354 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.69□□□□□ -0.54
CPNE3-201ENST00000517354 EVA1BQ9NVM1 165 aa11.68□□□□□ -0.54
CPNE3-201ENST00000517354 TIMELESSQ9UNS1 1208 aa11.68□□□□□ -0.54
CPNE3-201ENST00000517354 ZBTB24O43167 697 aaPredicted RBP11.67□□□□□ -0.54
CPNE3-201ENST00000517354 PPP1R18Q6NYC8 613 aa11.67□□□□□ -0.54
CPNE3-201ENST00000517354 FCF1Q9Y324 198 aaKnown RBP11.67□□□□□ -0.54
CPNE3-201ENST00000517354 PPEF1O14829 653 aaPredicted RBP11.66□□□□□ -0.54
CPNE3-201ENST00000517354 KCNH2Q12809 1159 aa11.66□□□□□ -0.54
CPNE3-201ENST00000517354 NR6A1Q15406 480 aa11.66□□□□□ -0.54
CPNE3-201ENST00000517354 IFFO2Q5TF58 517 aa11.65□□□□□ -0.54
CPNE3-201ENST00000517354 WWC1Q8IX03 1113 aa11.65□□□□□ -0.54
CPNE3-201ENST00000517354 MTMR14Q8NCE2 650 aa11.65□□□□□ -0.54
CPNE3-201ENST00000517354 RNF223E7ERA6 249 aa11.64□□□□□ -0.55
CPNE3-201ENST00000517354 SOCS7O14512 581 aa11.63□□□□□ -0.55
CPNE3-201ENST00000517354 ANKLE1Q8NAG6 615 aa11.63□□□□□ -0.55
CPNE3-201ENST00000517354 ARMC2Q8NEN0 867 aa11.63□□□□□ -0.55
CPNE3-201ENST00000517354 HMX1Q9NP08 348 aaPredicted RBP11.63□□□□□ -0.55
CPNE3-201ENST00000517354 NDUFB9Q9Y6M9 179 aa11.63□□□□□ -0.55
CPNE3-201ENST00000517354 ZMYND15Q9H091 742 aa11.62□□□□□ -0.55
CPNE3-201ENST00000517354 MAP10Q9P2G4 905 aa11.62□□□□□ -0.55
CPNE3-201ENST00000517354 GDPD2Q9HCC8 539 aa11.61□□□□□ -0.55
CPNE3-201ENST00000517354 F12P00748 615 aaPredicted RBP11.59□□□□□ -0.55
CPNE3-201ENST00000517354 ABL2P42684 1182 aa11.59□□□□□ -0.55
CPNE3-201ENST00000517354 EPS8L1Q8TE68 723 aa11.59□□□□□ -0.55
CPNE3-201ENST00000517354 PTCRAQ6ISU1 281 aaPredicted RBP11.58□□□□□ -0.56
CPNE3-201ENST00000517354 GJD4Q96KN9 370 aaPredicted RBP11.58□□□□□ -0.56
CPNE3-201ENST00000517354 TRIM34Q9BYJ4 488 aa11.58□□□□□ -0.56
CPNE3-201ENST00000517354 UNC93B1Q9H1C4 597 aa11.58□□□□□ -0.56
CPNE3-201ENST00000517354 CD2BP2O95400 341 aaKnown RBP11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 165.6 ms