RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 PRM3Q9NNZ6 103 aa1.13□□□□□ -2.23
RNU4-54P-201ENST00000516428 ENAMQ9NRM1 1142 aa1.13□□□□□ -2.23
RNU4-54P-201ENST00000516428 EMILIN3Q9NT22 766 aa1.13□□□□□ -2.23
RNU4-54P-201ENST00000516428 TSKSQ9UJT2 592 aa1.13□□□□□ -2.23
RNU4-54P-201ENST00000516428 CDV3Q9UKY7 258 aaKnown RBP1.13□□□□□ -2.23
RNU4-54P-201ENST00000516428 ATP1B4Q9UN42 357 aaPredicted RBP1.13□□□□□ -2.23
RNU4-54P-201ENST00000516428 NSFL1CQ9UNZ2 370 aaKnown RBP1.13□□□□□ -2.23
RNU4-54P-201ENST00000516428 ARID1BQ8NFD5 2236 aaPredicted RBP1.13□□□□□ -2.23
RNU4-54P-201ENST00000516428 RCCD1A6NED2 376 aa1.12□□□□□ -2.23
RNU4-54P-201ENST00000516428 DDX11L8A8MPP1 907 aa1.12□□□□□ -2.23
RNU4-54P-201ENST00000516428 SPTLC1O15269 473 aa1.12□□□□□ -2.23
RNU4-54P-201ENST00000516428 OSBPP22059 807 aa1.12□□□□□ -2.23
RNU4-54P-201ENST00000516428 PLCB2Q00722 1185 aa1.12□□□□□ -2.23
RNU4-54P-201ENST00000516428 FOXC1Q12948 553 aa1.12□□□□□ -2.23
RNU4-54P-201ENST00000516428 PTGDRQ13258 359 aa1.12□□□□□ -2.23
RNU4-54P-201ENST00000516428 MSS51Q4VC12 460 aa1.12□□□□□ -2.23
RNU4-54P-201ENST00000516428 PADI6Q6TGC4 694 aa1.12□□□□□ -2.23
RNU4-54P-201ENST00000516428 SCUBE3Q8IX30 993 aa1.12□□□□□ -2.23
RNU4-54P-201ENST00000516428 CRIPAKQ8N1N5 446 aa1.12□□□□□ -2.23
RNU4-54P-201ENST00000516428 EHBP1Q8NDI1 1231 aa1.12□□□□□ -2.23
RNU4-54P-201ENST00000516428 USB1Q9BQ65 265 aaKnown RBP1.12□□□□□ -2.23
RNU4-54P-201ENST00000516428 ZNF330Q9Y3S2 320 aaPredicted RBP1.12□□□□□ -2.23
RNU4-54P-201ENST00000516428 MINK1Q8N4C8 1332 aaPredicted RBP1.12□□□□□ -2.23
RNU4-54P-201ENST00000516428 RNF223E7ERA6 249 aa1.11□□□□□ -2.23
RNU4-54P-201ENST00000516428 SMAPO00193 183 aa1.11□□□□□ -2.23
RNU4-54P-201ENST00000516428 WNT7AO00755 349 aa1.11□□□□□ -2.23
RNU4-54P-201ENST00000516428 KDM4AO75164 1064 aa1.11□□□□□ -2.23
RNU4-54P-201ENST00000516428 FECHP22830 423 aa1.11□□□□□ -2.23
RNU4-54P-201ENST00000516428 VARSP26640 1264 aaKnown RBP1.11□□□□□ -2.23
RNU4-54P-201ENST00000516428 GJA5P36382 358 aa1.11□□□□□ -2.23
RNU4-54P-201ENST00000516428 SMCPP49901 116 aaPredicted RBP1.11□□□□□ -2.23
RNU4-54P-201ENST00000516428 APLP1P51693 650 aa1.11□□□□□ -2.23
RNU4-54P-201ENST00000516428 HAP1P54257 671 aaPredicted RBP1.11□□□□□ -2.23
RNU4-54P-201ENST00000516428 FOXK2Q01167 660 aa1.11□□□□□ -2.23
RNU4-54P-201ENST00000516428 MAP3K10Q02779 954 aa1.11□□□□□ -2.23
RNU4-54P-201ENST00000516428 DHX9Q08211 1270 aaKnown RBP1.11□□□□□ -2.23
RNU4-54P-201ENST00000516428 AGERQ15109 404 aa1.11□□□□□ -2.23
RNU4-54P-201ENST00000516428 TSR1Q2NL82 804 aaKnown RBP1.11□□□□□ -2.23
RNU4-54P-201ENST00000516428 NBPF14Q5TI25 921 aa1.11□□□□□ -2.23
RNU4-54P-201ENST00000516428 BLOC1S3Q6QNY0 202 aa1.11□□□□□ -2.23
RNU4-54P-201ENST00000516428 ERICH6Q7L0X2 663 aa1.11□□□□□ -2.23
RNU4-54P-201ENST00000516428 PODNQ7Z5L7 613 aa1.11□□□□□ -2.23
RNU4-54P-201ENST00000516428 VSIG10Q8N0Z9 540 aa1.11□□□□□ -2.23
RNU4-54P-201ENST00000516428 CCDC24Q8N4L8 307 aa1.11□□□□□ -2.23
RNU4-54P-201ENST00000516428 HELBQ8NG08 1087 aaPredicted RBP1.11□□□□□ -2.23
RNU4-54P-201ENST00000516428 FAM174AQ8TBP5 190 aa1.11□□□□□ -2.23
RNU4-54P-201ENST00000516428 PXYLP1Q8TE99 480 aa1.11□□□□□ -2.23
RNU4-54P-201ENST00000516428 GPKOWQ92917 476 aaPredicted RBP eCLIP1.11□□□□□ -2.23
RNU4-54P-201ENST00000516428 ARXQ96QS3 562 aa1.11□□□□□ -2.23
RNU4-54P-201ENST00000516428 EYA1Q99502 592 aa1.11□□□□□ -2.23
RNU4-54P-201ENST00000516428 RSPH6AQ9H0K4 717 aa1.11□□□□□ -2.23
RNU4-54P-201ENST00000516428 PGPEP1Q9NXJ5 209 aa1.11□□□□□ -2.23
RNU4-54P-201ENST00000516428 PHF20L1A8MW92 1017 aa1.1□□□□□ -2.23
RNU4-54P-201ENST00000516428 C6orf229H3BNL8 230 aa1.1□□□□□ -2.23
RNU4-54P-201ENST00000516428 CAPN5O15484 640 aaPredicted RBP1.1□□□□□ -2.23
RNU4-54P-201ENST00000516428 MAN1A2O60476 641 aa1.1□□□□□ -2.23
RNU4-54P-201ENST00000516428 S1PR4O95977 384 aa1.1□□□□□ -2.23
RNU4-54P-201ENST00000516428 ALDH1A1P00352 501 aa1.1□□□□□ -2.23
RNU4-54P-201ENST00000516428 AVPP01185 164 aa1.1□□□□□ -2.23
RNU4-54P-201ENST00000516428 IGHA1P01876 353 aa1.1□□□□□ -2.23
RNU4-54P-201ENST00000516428 MS4A1P11836 297 aa1.1□□□□□ -2.23
RNU4-54P-201ENST00000516428 GCGRP47871 477 aa1.1□□□□□ -2.23
RNU4-54P-201ENST00000516428 MCCD1P59942 119 aaPredicted RBP1.1□□□□□ -2.23
RNU4-54P-201ENST00000516428 MYT1Q01538 1121 aa1.1□□□□□ -2.23
RNU4-54P-201ENST00000516428 MAP2K5Q13163 448 aa1.1□□□□□ -2.23
RNU4-54P-201ENST00000516428 NR5A1Q13285 461 aa1.1□□□□□ -2.23
RNU4-54P-201ENST00000516428 TTLL12Q14166 644 aaPredicted RBP1.1□□□□□ -2.23
RNU4-54P-201ENST00000516428 RBM26Q5T8P6 1007 aaKnown RBP1.1□□□□□ -2.23
RNU4-54P-201ENST00000516428 DESI1Q6ICB0 168 aa1.1□□□□□ -2.23
RNU4-54P-201ENST00000516428 METTL3Q86U44 580 aaKnown RBP1.1□□□□□ -2.23
RNU4-54P-201ENST00000516428 ALYREFQ86V81 257 aaKnown RBP1.1□□□□□ -2.23
RNU4-54P-201ENST00000516428 RETREG3Q86VR2 466 aa1.1□□□□□ -2.23
RNU4-54P-201ENST00000516428 BPHLQ86WA6 291 aaPredicted RBP1.1□□□□□ -2.23
RNU4-54P-201ENST00000516428 WWC1Q8IX03 1113 aa1.1□□□□□ -2.23
RNU4-54P-201ENST00000516428 KCTD17Q8N5Z5 321 aa1.1□□□□□ -2.23
RNU4-54P-201ENST00000516428 TTC13Q8NBP0 860 aa1.1□□□□□ -2.23
RNU4-54P-201ENST00000516428 ZNF516Q92618 1163 aa1.1□□□□□ -2.23
RNU4-54P-201ENST00000516428 SCARF2Q96GP6 870 aaPredicted RBP1.1□□□□□ -2.23
RNU4-54P-201ENST00000516428 GMCL1Q96IK5 515 aa1.1□□□□□ -2.23
RNU4-54P-201ENST00000516428 KRTAP4-11Q9BYQ6 195 aa1.1□□□□□ -2.23
RNU4-54P-201ENST00000516428 KRTAP4-5Q9BYR2 181 aa1.1□□□□□ -2.23
RNU4-54P-201ENST00000516428 GPCPD1Q9NPB8 672 aa1.1□□□□□ -2.23
RNU4-54P-201ENST00000516428 FCF1Q9Y324 198 aaKnown RBP1.1□□□□□ -2.23
RNU4-54P-201ENST00000516428 ADGRG1Q9Y653 693 aa1.1□□□□□ -2.23
RNU4-54P-201ENST00000516428 TESPA1A2RU30 521 aaPredicted RBP1.09□□□□□ -2.23
RNU4-54P-201ENST00000516428 SPDYE3A6NKU9 549 aa1.09□□□□□ -2.23
RNU4-54P-201ENST00000516428 NUTM2BA6NNL0 878 aaPredicted RBP1.09□□□□□ -2.23
RNU4-54P-201ENST00000516428 NUTM2EB1AL46 878 aaPredicted RBP1.09□□□□□ -2.23
RNU4-54P-201ENST00000516428 H7C1W4 665 aa1.09□□□□□ -2.23
RNU4-54P-201ENST00000516428 TNFRSF10AO00220 468 aa1.09□□□□□ -2.23
RNU4-54P-201ENST00000516428 TERTO14746 1132 aaKnown RBP1.09□□□□□ -2.23
RNU4-54P-201ENST00000516428 ADH1CP00326 375 aa1.09□□□□□ -2.23
RNU4-54P-201ENST00000516428 CCNYL3P0C7X3 344 aa1.09□□□□□ -2.23
RNU4-54P-201ENST00000516428 PRKCSHP14314 528 aaPredicted RBP1.09□□□□□ -2.23
RNU4-54P-201ENST00000516428 JUNDP17535 347 aa1.09□□□□□ -2.23
RNU4-54P-201ENST00000516428 CTHP32929 405 aa1.09□□□□□ -2.23
RNU4-54P-201ENST00000516428 MMP16P51512 607 aa1.09□□□□□ -2.23
RNU4-54P-201ENST00000516428 MARSP56192 900 aaKnown RBP1.09□□□□□ -2.23
RNU4-54P-201ENST00000516428 FUT2Q10981 343 aa1.09□□□□□ -2.23
RNU4-54P-201ENST00000516428 KCNMA1Q12791 1236 aa1.09□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms