RNA–Protein interactions for RNA: ENST00000515847.1

LIMCH1-222, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-222ENST00000515847 FBXO41Q8TF61 875 aa11.1□□□□□ -0.63
LIMCH1-222ENST00000515847 KNDC1Q76NI1 1749 aa11.09□□□□□ -0.63
LIMCH1-222ENST00000515847 PTCH1Q13635 1447 aa11.09□□□□□ -0.63
LIMCH1-222ENST00000515847 PRAG1Q86YV5 1406 aa11.09□□□□□ -0.63
LIMCH1-222ENST00000515847 UBAP1LF5GYI3 381 aa11.08□□□□□ -0.64
LIMCH1-222ENST00000515847 CFAP70Q5T0N1 1121 aa11.08□□□□□ -0.64
LIMCH1-222ENST00000515847 TMEM132EQ6IEE7 984 aa11.08□□□□□ -0.64
LIMCH1-222ENST00000515847 ILDR1Q86SU0 546 aaPredicted RBP11.08□□□□□ -0.64
LIMCH1-222ENST00000515847 L3MBTL2Q969R5 705 aa11.08□□□□□ -0.64
LIMCH1-222ENST00000515847 C14orf93Q9H972 538 aaKnown RBP11.08□□□□□ -0.64
LIMCH1-222ENST00000515847 ADGRB1O14514 1584 aa11.07□□□□□ -0.64
LIMCH1-222ENST00000515847 LRPPRCP42704 1394 aaKnown RBP11.07□□□□□ -0.64
LIMCH1-222ENST00000515847 ROBO2Q9HCK4 1378 aa11.07□□□□□ -0.64
LIMCH1-222ENST00000515847 MKRN4PQ13434 485 aaPredicted RBP11.07□□□□□ -0.64
LIMCH1-222ENST00000515847 TECPR2O15040 1411 aa11.07□□□□□ -0.64
LIMCH1-222ENST00000515847 YTHDC2Q9H6S0 1430 aaKnown RBP11.07□□□□□ -0.64
LIMCH1-222ENST00000515847 NALCNQ8IZF0 1738 aa11.06□□□□□ -0.64
LIMCH1-222ENST00000515847 MSH6P52701 1360 aa11.06□□□□□ -0.64
LIMCH1-222ENST00000515847 SPDYE2BA6NHP3 402 aa11.06□□□□□ -0.64
LIMCH1-222ENST00000515847 SPDYE6P0CI01 402 aa11.06□□□□□ -0.64
LIMCH1-222ENST00000515847 SPDYE2Q495Y8 402 aa11.06□□□□□ -0.64
LIMCH1-222ENST00000515847 NCOA3Q9Y6Q9 1424 aa11.06□□□□□ -0.64
LIMCH1-222ENST00000515847 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.06□□□□□ -0.64
LIMCH1-222ENST00000515847 KIAA1210Q9ULL0 1709 aa11.06□□□□□ -0.64
LIMCH1-222ENST00000515847 C14orf37Q86TY3 774 aa11.05□□□□□ -0.64
LIMCH1-222ENST00000515847 STK26Q9P289 416 aa11.05□□□□□ -0.64
LIMCH1-222ENST00000515847 EIF3AQ14152 1382 aaKnown RBP11.04□□□□□ -0.64
LIMCH1-222ENST00000515847 ABCC11Q96J66 1382 aa11.04□□□□□ -0.64
LIMCH1-222ENST00000515847 ADGRL3Q9HAR2 1447 aa11.04□□□□□ -0.64
LIMCH1-222ENST00000515847 PITPNM1O00562 1244 aa11.04□□□□□ -0.64
LIMCH1-222ENST00000515847 TOM1O60784 492 aa11.04□□□□□ -0.64
LIMCH1-222ENST00000515847 PIP4K2BP78356 416 aa11.03□□□□□ -0.64
LIMCH1-222ENST00000515847 DLC1Q96QB1 1528 aa11.03□□□□□ -0.64
LIMCH1-222ENST00000515847 PLEKHH1Q9ULM0 1364 aa11.03□□□□□ -0.64
LIMCH1-222ENST00000515847 TRPM1Q7Z4N2 1603 aa11.02□□□□□ -0.64
LIMCH1-222ENST00000515847 DCCP43146 1447 aa11.02□□□□□ -0.64
LIMCH1-222ENST00000515847 ROCK2O75116 1388 aaKnown RBP11.02□□□□□ -0.65
LIMCH1-222ENST00000515847 FAM135BQ49AJ0 1406 aa11.01□□□□□ -0.65
LIMCH1-222ENST00000515847 ARHGEF28Q8N1W1 1705 aaKnown RBP11.01□□□□□ -0.65
LIMCH1-222ENST00000515847 WAPLQ7Z5K2 1190 aa11.01□□□□□ -0.65
LIMCH1-222ENST00000515847 C19orf44Q9H6X5 657 aa11.01□□□□□ -0.65
LIMCH1-222ENST00000515847 CDC42BPGQ6DT37 1551 aa11□□□□□ -0.65
LIMCH1-222ENST00000515847 NBPF1Q3BBV0 1214 aa11□□□□□ -0.65
LIMCH1-222ENST00000515847 PIP4P2Q8N4L2 257 aa11□□□□□ -0.65
LIMCH1-222ENST00000515847 TRAK1Q9UPV9 953 aa11□□□□□ -0.65
LIMCH1-222ENST00000515847 ROBO1Q9Y6N7 1651 aa11□□□□□ -0.65
LIMCH1-222ENST00000515847 RALGAPBQ86X10 1494 aa11□□□□□ -0.65
LIMCH1-222ENST00000515847 ATF3P18847 181 aa10.99□□□□□ -0.65
LIMCH1-222ENST00000515847 NBPF8Q3BBV2 869 aa10.99□□□□□ -0.65
LIMCH1-222ENST00000515847 CADPS2Q86UW7 1296 aa10.99□□□□□ -0.65
LIMCH1-222ENST00000515847 SIRT1Q96EB6 747 aa10.99□□□□□ -0.65
LIMCH1-222ENST00000515847 MST1RQ04912 1400 aa10.99□□□□□ -0.65
LIMCH1-222ENST00000515847 SLC24A1O60721 1099 aa10.98□□□□□ -0.65
LIMCH1-222ENST00000515847 SAFB2Q14151 953 aaKnown RBP eCLIP10.98□□□□□ -0.65
LIMCH1-222ENST00000515847 PRAM1Q96QH2 718 aa10.98□□□□□ -0.65
LIMCH1-222ENST00000515847 SLAIN2Q9P270 581 aa10.97□□□□□ -0.65
LIMCH1-222ENST00000515847 GPRASP1Q5JY77 1395 aa10.97□□□□□ -0.65
LIMCH1-222ENST00000515847 ADGRB2O60241 1585 aa10.96□□□□□ -0.65
LIMCH1-222ENST00000515847 POGKQ9P215 609 aa10.96□□□□□ -0.65
LIMCH1-222ENST00000515847 FMN2Q9NZ56 1722 aa10.95□□□□□ -0.66
LIMCH1-222ENST00000515847 C1orf167Q5SNV9 1468 aa10.95□□□□□ -0.66
LIMCH1-222ENST00000515847 ZEB1P37275 1124 aaPredicted RBP10.95□□□□□ -0.66
LIMCH1-222ENST00000515847 CARD11Q9BXL7 1154 aa10.95□□□□□ -0.66
LIMCH1-222ENST00000515847 MINK1Q8N4C8 1332 aaPredicted RBP10.94□□□□□ -0.66
LIMCH1-222ENST00000515847 HSPA1LP34931 641 aa10.94□□□□□ -0.66
LIMCH1-222ENST00000515847 FXR2P51116 673 aaKnown RBP eCLIP10.94□□□□□ -0.66
LIMCH1-222ENST00000515847 ZNF692Q9BU19 519 aaPredicted RBP10.94□□□□□ -0.66
LIMCH1-222ENST00000515847 QRICH2Q9H0J4 1663 aa10.94□□□□□ -0.66
LIMCH1-222ENST00000515847 BRINP3Q76B58 766 aa10.93□□□□□ -0.66
LIMCH1-222ENST00000515847 HIRIP3Q9BW71 556 aaPredicted RBP10.93□□□□□ -0.66
LIMCH1-222ENST00000515847 PHLPP1O60346 1717 aa10.92□□□□□ -0.66
LIMCH1-222ENST00000515847 NHSL1Q5SYE7 1610 aa10.92□□□□□ -0.66
LIMCH1-222ENST00000515847 AHDC1Q5TGY3 1603 aaPredicted RBP10.92□□□□□ -0.66
LIMCH1-222ENST00000515847 CENPJQ9HC77 1338 aaPredicted RBP10.92□□□□□ -0.66
LIMCH1-222ENST00000515847 SSUH2Q9Y2M2 353 aa10.92□□□□□ -0.66
LIMCH1-222ENST00000515847 USP32Q8NFA0 1604 aa10.91□□□□□ -0.66
LIMCH1-222ENST00000515847 NUTM2FA1L443 756 aa10.91□□□□□ -0.66
LIMCH1-222ENST00000515847 COL16A1Q07092 1604 aaPredicted RBP10.91□□□□□ -0.66
LIMCH1-222ENST00000515847 RGPD8O14715 1765 aaPredicted RBP10.9□□□□□ -0.66
LIMCH1-222ENST00000515847 TULP4Q9NRJ4 1543 aa10.9□□□□□ -0.66
LIMCH1-222ENST00000515847 ORAI2Q96SN7 254 aa10.9□□□□□ -0.66
LIMCH1-222ENST00000515847 SBNO2Q9Y2G9 1366 aa10.9□□□□□ -0.67
LIMCH1-222ENST00000515847 DDX17Q92841 729 aaKnown RBP10.89□□□□□ -0.67
LIMCH1-222ENST00000515847 ANKARQ7Z5J8 1434 aa10.89□□□□□ -0.67
LIMCH1-222ENST00000515847 KIF1AQ12756 1690 aa10.89□□□□□ -0.67
LIMCH1-222ENST00000515847 WASLO00401 505 aaPredicted RBP10.88□□□□□ -0.67
LIMCH1-222ENST00000515847 USP47Q96K76 1375 aa10.88□□□□□ -0.67
LIMCH1-222ENST00000515847 ATP7BP35670 1465 aa10.87□□□□□ -0.67
LIMCH1-222ENST00000515847 PRR36Q9H6K5 1346 aa10.87□□□□□ -0.67
LIMCH1-222ENST00000515847 CDCA8Q53HL2 280 aa10.87□□□□□ -0.67
LIMCH1-222ENST00000515847 ESCO1Q5FWF5 840 aa10.87□□□□□ -0.67
LIMCH1-222ENST00000515847 SPDYE1Q8NFV5 336 aaPredicted RBP10.87□□□□□ -0.67
LIMCH1-222ENST00000515847 ITSN1Q15811 1721 aa10.87□□□□□ -0.67
LIMCH1-222ENST00000515847 EVC2Q86UK5 1308 aa10.86□□□□□ -0.67
LIMCH1-222ENST00000515847 TOPAZ1Q8N9V7 1692 aa10.86□□□□□ -0.67
LIMCH1-222ENST00000515847 EIF4G2P78344 907 aaKnown RBP eCLIP10.85□□□□□ -0.67
LIMCH1-222ENST00000515847 CDK19Q9BWU1 502 aa10.85□□□□□ -0.67
LIMCH1-222ENST00000515847 CLEC11AQ9Y240 323 aa10.85□□□□□ -0.67
LIMCH1-222ENST00000515847 ATAD2Q6PL18 1390 aa10.85□□□□□ -0.67
LIMCH1-222ENST00000515847 PXDNQ92626 1479 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms