RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 PRR20BP86481 221 aa10.56□□□□□ -0.72
NUP54-218ENST00000515460 PRR20AP86496 221 aa10.56□□□□□ -0.72
NUP54-218ENST00000515460 FAM187AA6NFU0 413 aa10.54□□□□□ -0.72
NUP54-218ENST00000515460 Q3C1V9 767 aa10.54□□□□□ -0.72
NUP54-218ENST00000515460 ZNF787Q6DD87 383 aa10.54□□□□□ -0.72
NUP54-218ENST00000515460 LMOD2Q6P5Q4 547 aa10.54□□□□□ -0.72
NUP54-218ENST00000515460 HLA-CQ95604 372 aa10.54□□□□□ -0.72
NUP54-218ENST00000515460 CD2BP2O95400 341 aaKnown RBP10.53□□□□□ -0.72
NUP54-218ENST00000515460 CLCN1P35523 988 aa10.53□□□□□ -0.72
NUP54-218ENST00000515460 RPIAP49247 311 aa10.53□□□□□ -0.72
NUP54-218ENST00000515460 GPCPD1Q9NPB8 672 aa10.53□□□□□ -0.72
NUP54-218ENST00000515460 DGAT1O75907 488 aa10.52□□□□□ -0.73
NUP54-218ENST00000515460 PKD2L1Q9P0L9 805 aa10.52□□□□□ -0.73
NUP54-218ENST00000515460 MYT1Q01538 1121 aa10.51□□□□□ -0.73
NUP54-218ENST00000515460 MSS51Q4VC12 460 aa10.51□□□□□ -0.73
NUP54-218ENST00000515460 ZBTB24O43167 697 aaPredicted RBP10.5□□□□□ -0.73
NUP54-218ENST00000515460 SLC24A1O60721 1099 aa10.5□□□□□ -0.73
NUP54-218ENST00000515460 GUCA2AQ02747 115 aa10.5□□□□□ -0.73
NUP54-218ENST00000515460 USB1Q9BQ65 265 aaKnown RBP10.5□□□□□ -0.73
NUP54-218ENST00000515460 FAM217BQ9NTX9 383 aaPredicted RBP10.5□□□□□ -0.73
NUP54-218ENST00000515460 USP46P62068 366 aa10.49□□□□□ -0.73
NUP54-218ENST00000515460 HOXA2O43364 376 aa10.48□□□□□ -0.73
NUP54-218ENST00000515460 NUTM1Q86Y26 1132 aa10.48□□□□□ -0.73
NUP54-218ENST00000515460 REPIN1Q9BWE0 567 aaKnown RBP10.47□□□□□ -0.73
NUP54-218ENST00000515460 CCDC24Q8N4L8 307 aa10.46□□□□□ -0.73
NUP54-218ENST00000515460 SYMPKQ92797 1274 aaKnown RBP10.46□□□□□ -0.73
NUP54-218ENST00000515460 MMP16P51512 607 aa10.45□□□□□ -0.74
NUP54-218ENST00000515460 CYP4X1Q8N118 509 aa10.45□□□□□ -0.74
NUP54-218ENST00000515460 RIMBP3CA6NJZ7 1639 aa10.44□□□□□ -0.74
NUP54-218ENST00000515460 RIMBP3BA6NNM3 1639 aa10.44□□□□□ -0.74
NUP54-218ENST00000515460 RIMBP3Q9UFD9 1639 aa10.44□□□□□ -0.74
NUP54-218ENST00000515460 ST8SIA5O15466 376 aa10.44□□□□□ -0.74
NUP54-218ENST00000515460 SSTR3P32745 418 aaPredicted RBP10.44□□□□□ -0.74
NUP54-218ENST00000515460 TTLL12Q14166 644 aaPredicted RBP10.44□□□□□ -0.74
NUP54-218ENST00000515460 BARGINQ6ZT62 677 aa10.44□□□□□ -0.74
NUP54-218ENST00000515460 ZC3H15Q8WU90 426 aaKnown RBP10.44□□□□□ -0.74
NUP54-218ENST00000515460 ZMYND10O75800 440 aa10.43□□□□□ -0.74
NUP54-218ENST00000515460 POTECB2RU33 542 aa10.42□□□□□ -0.74
NUP54-218ENST00000515460 DXOO77932 396 aaKnown RBP10.42□□□□□ -0.74
NUP54-218ENST00000515460 TRIM32Q13049 653 aa10.41□□□□□ -0.74
NUP54-218ENST00000515460 TOR4AQ9NXH8 423 aa10.41□□□□□ -0.74
NUP54-218ENST00000515460 TTC24A2A3L6 582 aaPredicted RBP10.4□□□□□ -0.74
NUP54-218ENST00000515460 AAASQ9NRG9 546 aa10.4□□□□□ -0.74
NUP54-218ENST00000515460 FDX1P10109 184 aa10.39□□□□□ -0.75
NUP54-218ENST00000515460 CYB5RLQ6IPT4 315 aa10.39□□□□□ -0.75
NUP54-218ENST00000515460 LMTK3Q96Q04 1460 aa10.38□□□□□ -0.75
NUP54-218ENST00000515460 C6orf229H3BNL8 230 aa10.38□□□□□ -0.75
NUP54-218ENST00000515460 SPIRE2Q8WWL2 714 aa10.38□□□□□ -0.75
NUP54-218ENST00000515460 SHROOM4Q9ULL8 1493 aa10.37□□□□□ -0.75
NUP54-218ENST00000515460 SOCS7O14512 581 aa10.37□□□□□ -0.75
NUP54-218ENST00000515460 NDUFV2P19404 249 aa10.37□□□□□ -0.75
NUP54-218ENST00000515460 ZNF775Q96BV0 537 aaPredicted RBP10.37□□□□□ -0.75
NUP54-218ENST00000515460 PCDHGC3Q9UN70 934 aa10.37□□□□□ -0.75
NUP54-218ENST00000515460 WNT7AO00755 349 aa10.36□□□□□ -0.75
NUP54-218ENST00000515460 JUNDP17535 347 aa10.36□□□□□ -0.75
NUP54-218ENST00000515460 GIGYF2Q6Y7W6 1299 aaKnown RBP10.36□□□□□ -0.75
NUP54-218ENST00000515460 ILDR2Q71H61 639 aa10.36□□□□□ -0.75
NUP54-218ENST00000515460 RETREG3Q86VR2 466 aa10.36□□□□□ -0.75
NUP54-218ENST00000515460 MRGPRX2Q96LB1 330 aa10.36□□□□□ -0.75
NUP54-218ENST00000515460 AMHR2Q16671 573 aa10.35□□□□□ -0.75
NUP54-218ENST00000515460 DACH1Q9UI36 760 aa10.35□□□□□ -0.75
NUP54-218ENST00000515460 THOC2Q8NI27 1593 aaKnown RBP10.35□□□□□ -0.75
NUP54-218ENST00000515460 NESP48681 1621 aa10.34□□□□□ -0.75
NUP54-218ENST00000515460 SNIP1Q8TAD8 396 aaKnown RBP10.34□□□□□ -0.75
NUP54-218ENST00000515460 MOXD2PA6NHM9 499 aa10.33□□□□□ -0.76
NUP54-218ENST00000515460 AXIN1O15169 862 aa10.33□□□□□ -0.76
NUP54-218ENST00000515460 BEGAINQ9BUH8 593 aa10.33□□□□□ -0.76
NUP54-218ENST00000515460 BAZ1AQ9NRL2 1556 aaPredicted RBP10.33□□□□□ -0.76
NUP54-218ENST00000515460 RC3H1Q5TC82 1133 aaKnown RBP10.32□□□□□ -0.76
NUP54-218ENST00000515460 BCANQ96GW7 911 aa10.32□□□□□ -0.76
NUP54-218ENST00000515460 NUDT12Q9BQG2 462 aa10.32□□□□□ -0.76
NUP54-218ENST00000515460 J3QL48 77 aa10.31□□□□□ -0.76
NUP54-218ENST00000515460 AVPP01185 164 aa10.31□□□□□ -0.76
NUP54-218ENST00000515460 SMPD1P17405 629 aa10.31□□□□□ -0.76
NUP54-218ENST00000515460 SKOR1P84550 965 aa10.31□□□□□ -0.76
NUP54-218ENST00000515460 PTCRAQ6ISU1 281 aaPredicted RBP10.31□□□□□ -0.76
NUP54-218ENST00000515460 CRIPAKQ8N1N5 446 aa10.3□□□□□ -0.76
NUP54-218ENST00000515460 TRIM66O15016 1216 aa10.29□□□□□ -0.76
NUP54-218ENST00000515460 MS4A1P11836 297 aa10.29□□□□□ -0.76
NUP54-218ENST00000515460 PARP9Q8IXQ6 854 aa10.29□□□□□ -0.76
NUP54-218ENST00000515460 CTC1Q2NKJ3 1217 aa10.28□□□□□ -0.76
NUP54-218ENST00000515460 PRR7Q8TB68 274 aa10.28□□□□□ -0.76
NUP54-218ENST00000515460 AK7Q96M32 723 aa10.28□□□□□ -0.76
NUP54-218ENST00000515460 TBC1D2Q9BYX2 928 aa10.28□□□□□ -0.76
NUP54-218ENST00000515460 ARHGEF11O15085 1522 aa10.28□□□□□ -0.76
NUP54-218ENST00000515460 WNT7BP56706 349 aa10.27□□□□□ -0.77
NUP54-218ENST00000515460 GMPR2Q9P2T1 348 aaKnown RBP10.27□□□□□ -0.77
NUP54-218ENST00000515460 CCNYL3P0C7X3 344 aa10.26□□□□□ -0.77
NUP54-218ENST00000515460 MTMR2Q13614 643 aa10.26□□□□□ -0.77
NUP54-218ENST00000515460 SMCPP49901 116 aaPredicted RBP10.25□□□□□ -0.77
NUP54-218ENST00000515460 HPS1Q92902 700 aa10.25□□□□□ -0.77
NUP54-218ENST00000515460 C11orf95C9JLR9 678 aaPredicted RBP10.24□□□□□ -0.77
NUP54-218ENST00000515460 ALDH1A1P00352 501 aa10.24□□□□□ -0.77
NUP54-218ENST00000515460 PCDHB15Q9Y5E8 787 aa10.24□□□□□ -0.77
NUP54-218ENST00000515460 SMARCA2P51531 1590 aa10.23□□□□□ -0.77
NUP54-218ENST00000515460 EHBP1Q8NDI1 1231 aa10.23□□□□□ -0.77
NUP54-218ENST00000515460 PTPRNQ16849 979 aa10.22□□□□□ -0.77
NUP54-218ENST00000515460 LINC01559Q495D7 138 aa10.22□□□□□ -0.77
NUP54-218ENST00000515460 RSBN1LQ6PCB5 846 aaPredicted RBP10.22□□□□□ -0.77
NUP54-218ENST00000515460 EVA1BQ9NVM1 165 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms