RNA–Protein interactions for RNA: ENST00000515311.5

LSM6-207, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 4

Gene LSM6, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-207ENST00000515311 ADGRB2O60241 1585 aa29.53■■■□□ 2.32
LSM6-207ENST00000515311 HSPA5P11021 654 aaKnown RBP29.53■■■□□ 2.32
LSM6-207ENST00000515311 TMEM94Q12767 1356 aa29.52■■■□□ 2.32
LSM6-207ENST00000515311 ADGRL3Q9HAR2 1447 aa29.5■■■□□ 2.31
LSM6-207ENST00000515311 SLC24A1O60721 1099 aa29.48■■■□□ 2.31
LSM6-207ENST00000515311 SAFB2Q14151 953 aaKnown RBP eCLIP29.48■■■□□ 2.31
LSM6-207ENST00000515311 TESK2Q96S53 571 aa29.48■■■□□ 2.31
LSM6-207ENST00000515311 CDC42BPGQ6DT37 1551 aa29.47■■■□□ 2.31
LSM6-207ENST00000515311 RBM33Q96EV2 1170 aaKnown RBP29.44■■■□□ 2.3
LSM6-207ENST00000515311 MINK1Q8N4C8 1332 aaPredicted RBP29.44■■■□□ 2.3
LSM6-207ENST00000515311 TULP4Q9NRJ4 1543 aa29.43■■■□□ 2.3
LSM6-207ENST00000515311 DCCP43146 1447 aa29.42■■■□□ 2.3
LSM6-207ENST00000515311 C14orf37Q86TY3 774 aa29.41■■■□□ 2.3
LSM6-207ENST00000515311 C19orf44Q9H6X5 657 aa29.4■■■□□ 2.3
LSM6-207ENST00000515311 MSH6P52701 1360 aa29.39■■■□□ 2.3
LSM6-207ENST00000515311 FMN2Q9NZ56 1722 aa29.39■■■□□ 2.3
LSM6-207ENST00000515311 IQSEC2Q5JU85 1478 aa29.38■■■□□ 2.29
LSM6-207ENST00000515311 HIRIP3Q9BW71 556 aaPredicted RBP29.38■■■□□ 2.29
LSM6-207ENST00000515311 EVC2Q86UK5 1308 aa29.38■■■□□ 2.29
LSM6-207ENST00000515311 TMF1P82094 1093 aa29.37■■■□□ 2.29
LSM6-207ENST00000515311 WASLO00401 505 aaPredicted RBP29.36■■■□□ 2.29
LSM6-207ENST00000515311 DISP3Q9P2K9 1392 aa29.35■■■□□ 2.29
LSM6-207ENST00000515311 PUS7Q96PZ0 661 aaKnown RBP29.31■■■□□ 2.28
LSM6-207ENST00000515311 CDK19Q9BWU1 502 aa29.31■■■□□ 2.28
LSM6-207ENST00000515311 ATF3P18847 181 aa29.3■■■□□ 2.28
LSM6-207ENST00000515311 CDCA8Q53HL2 280 aa29.3■■■□□ 2.28
LSM6-207ENST00000515311 CADPS2Q86UW7 1296 aa29.3■■■□□ 2.28
LSM6-207ENST00000515311 ANKARQ7Z5J8 1434 aa29.29■■■□□ 2.28
LSM6-207ENST00000515311 USP32Q8NFA0 1604 aa29.29■■■□□ 2.28
LSM6-207ENST00000515311 PHF23Q9BUL5 403 aaPredicted RBP29.28■■■□□ 2.28
LSM6-207ENST00000515311 ITSN1Q15811 1721 aa29.28■■■□□ 2.28
LSM6-207ENST00000515311 SRPK2P78362 688 aaKnown RBP29.27■■■□□ 2.28
LSM6-207ENST00000515311 ATP7BP35670 1465 aa29.27■■■□□ 2.28
LSM6-207ENST00000515311 TOPAZ1Q8N9V7 1692 aa29.26■■■□□ 2.27
LSM6-207ENST00000515311 CERKQ8TCT0 537 aa29.26■■■□□ 2.27
LSM6-207ENST00000515311 MST1RQ04912 1400 aa29.25■■■□□ 2.27
LSM6-207ENST00000515311 ATAD2Q6PL18 1390 aa29.25■■■□□ 2.27
LSM6-207ENST00000515311 RGPD8O14715 1765 aaPredicted RBP29.24■■■□□ 2.27
LSM6-207ENST00000515311 C11orf95C9JLR9 678 aaPredicted RBP29.24■■■□□ 2.27
LSM6-207ENST00000515311 CABP2Q9NPB3 220 aa29.24■■■□□ 2.27
LSM6-207ENST00000515311 KIF7Q2M1P5 1343 aa29.21■■■□□ 2.27
LSM6-207ENST00000515311 NUDT16Q96DE0 195 aaKnown RBP29.21■■■□□ 2.27
LSM6-207ENST00000515311 PRR36Q9H6K5 1346 aa29.2■■■□□ 2.27
LSM6-207ENST00000515311 CCDC7Q96M83 1385 aa29.2■■■□□ 2.26
LSM6-207ENST00000515311 C1orf167Q5SNV9 1468 aa29.2■■■□□ 2.26
LSM6-207ENST00000515311 MYOM1P52179 1685 aa29.2■■■□□ 2.26
LSM6-207ENST00000515311 WASHC2AQ641Q2 1341 aa29.19■■■□□ 2.26
LSM6-207ENST00000515311 NINLQ9Y2I6 1382 aa29.18■■■□□ 2.26
LSM6-207ENST00000515311 ZNF316A6NFI3 1004 aaPredicted RBP29.18■■■□□ 2.26
LSM6-207ENST00000515311 CCDC61Q9Y6R9 512 aa29.17■■■□□ 2.26
LSM6-207ENST00000515311 KIF1AQ12756 1690 aa29.16■■■□□ 2.26
LSM6-207ENST00000515311 NUTM2FA1L443 756 aa29.16■■■□□ 2.26
LSM6-207ENST00000515311 SLAIN2Q9P270 581 aa29.15■■■□□ 2.26
LSM6-207ENST00000515311 PPIP5K1Q6PFW1 1433 aa29.14■■■□□ 2.26
LSM6-207ENST00000515311 TOM1O60784 492 aa29.12■■■□□ 2.25
LSM6-207ENST00000515311 POLR3GLQ9BT43 218 aa29.1■■■□□ 2.25
LSM6-207ENST00000515311 PLEKHG3A1L390 1219 aa29.09■■■□□ 2.25
LSM6-207ENST00000515311 ESCO1Q5FWF5 840 aa29.08■■■□□ 2.25
LSM6-207ENST00000515311 AKAP12Q02952 1782 aa29.08■■■□□ 2.25
LSM6-207ENST00000515311 CABP1Q9NZU7 370 aa29.07■■■□□ 2.24
LSM6-207ENST00000515311 PHF8Q9UPP1 1060 aa29.07■■■□□ 2.24
LSM6-207ENST00000515311 ROBO1Q9Y6N7 1651 aa29.06■■■□□ 2.24
LSM6-207ENST00000515311 POLR3AO14802 1390 aaPredicted RBP29.06■■■□□ 2.24
LSM6-207ENST00000515311 UBAP1LF5GYI3 381 aa29.06■■■□□ 2.24
LSM6-207ENST00000515311 TMC1Q8TDI8 760 aa29.06■■■□□ 2.24
LSM6-207ENST00000515311 ORAI2Q96SN7 254 aa29.06■■■□□ 2.24
LSM6-207ENST00000515311 SLC12A5Q9H2X9 1139 aa29.05■■■□□ 2.24
LSM6-207ENST00000515311 CD163L1Q9NR16 1453 aa29.04■■■□□ 2.24
LSM6-207ENST00000515311 BRINP3Q76B58 766 aa29.04■■■□□ 2.24
LSM6-207ENST00000515311 MON2Q7Z3U7 1717 aa29.03■■■□□ 2.24
LSM6-207ENST00000515311 CPSF1Q10570 1443 aaKnown RBP29.03■■■□□ 2.24
LSM6-207ENST00000515311 ANKRD36BQ8N2N9 1353 aa29.02■■■□□ 2.24
LSM6-207ENST00000515311 TERF2IPQ9NYB0 399 aa29.02■■■□□ 2.24
LSM6-207ENST00000515311 NHSL1Q5SYE7 1610 aa29.02■■■□□ 2.24
LSM6-207ENST00000515311 ACEP12821 1306 aa29.01■■■□□ 2.23
LSM6-207ENST00000515311 PMFBP1Q8TBY8 1022 aa29■■■□□ 2.23
LSM6-207ENST00000515311 NGDNQ8NEJ9 315 aaKnown RBP28.99■■■□□ 2.23
LSM6-207ENST00000515311 A0A1W2PP64 1363 aa28.99■■■□□ 2.23
LSM6-207ENST00000515311 HDGFL2Q7Z4V5 671 aaPredicted RBP28.98■■■□□ 2.23
LSM6-207ENST00000515311 ZNF692Q9BU19 519 aaPredicted RBP28.97■■■□□ 2.23
LSM6-207ENST00000515311 NRKQ7Z2Y5 1582 aa28.96■■■□□ 2.23
LSM6-207ENST00000515311 AHDC1Q5TGY3 1603 aaPredicted RBP28.96■■■□□ 2.23
LSM6-207ENST00000515311 NPHP3Q7Z494 1330 aa28.95■■■□□ 2.23
LSM6-207ENST00000515311 USP6P35125 1406 aa28.94■■■□□ 2.22
LSM6-207ENST00000515311 BRD4O60885 1362 aaPredicted RBP28.94■■■□□ 2.22
LSM6-207ENST00000515311 KTN1Q86UP2 1357 aaKnown RBP28.94■■■□□ 2.22
LSM6-207ENST00000515311 FOXO3O43524 673 aa28.94■■■□□ 2.22
LSM6-207ENST00000515311 PXDNQ92626 1479 aa28.93■■■□□ 2.22
LSM6-207ENST00000515311 PIP4K2BP78356 416 aa28.93■■■□□ 2.22
LSM6-207ENST00000515311 PANK3Q9H999 370 aa28.93■■■□□ 2.22
LSM6-207ENST00000515311 TRPM3Q9HCF6 1732 aaPredicted RBP28.92■■■□□ 2.22
LSM6-207ENST00000515311 EDC4Q6P2E9 1401 aaKnown RBP28.92■■■□□ 2.22
LSM6-207ENST00000515311 PSME1Q06323 249 aa28.9■■■□□ 2.22
LSM6-207ENST00000515311 SSH2Q76I76 1423 aa28.9■■■□□ 2.22
LSM6-207ENST00000515311 SCAF1Q9H7N4 1312 aaKnown RBP28.89■■■□□ 2.21
LSM6-207ENST00000515311 DDX10Q13206 875 aaKnown RBP28.88■■■□□ 2.21
LSM6-207ENST00000515311 CARD14Q9BXL6 1004 aa28.88■■■□□ 2.21
LSM6-207ENST00000515311 PHLPP1O60346 1717 aa28.87■■■□□ 2.21
LSM6-207ENST00000515311 SOS2Q07890 1332 aaPredicted RBP28.87■■■□□ 2.21
LSM6-207ENST00000515311 NSD3Q9BZ95 1437 aa28.86■■■□□ 2.21
Retrieved 100 of 20,778 RNA–protein pairs in 142 ms