RNA–Protein interactions for RNA: ENST00000514142.5

PDLIM3-209, Transcript of PDZ and LIM domain 3, humanhuman

TSL 1 (best)

Gene PDLIM3, Length 5,137 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-209ENST00000514142 CARMIL2Q6F5E8 1435 aa12.5□□□□□ -0.41
PDLIM3-209ENST00000514142 FIBPO43427 364 aa12.5□□□□□ -0.41
PDLIM3-209ENST00000514142 FKBP5Q13451 457 aaPredicted RBP12.5□□□□□ -0.41
PDLIM3-209ENST00000514142 NAP1L1P55209 391 aaKnown RBP12.49□□□□□ -0.41
PDLIM3-209ENST00000514142 FMNL2Q96PY5 1086 aa12.49□□□□□ -0.41
PDLIM3-209ENST00000514142 LETM1O95202 739 aaPredicted RBP12.49□□□□□ -0.41
PDLIM3-209ENST00000514142 MCM4P33991 863 aa12.49□□□□□ -0.41
PDLIM3-209ENST00000514142 RRP12Q5JTH9 1297 aaKnown RBP12.49□□□□□ -0.41
PDLIM3-209ENST00000514142 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.49□□□□□ -0.41
PDLIM3-209ENST00000514142 LEKR1Q6ZMV7 388 aa12.48□□□□□ -0.41
PDLIM3-209ENST00000514142 SMC2O95347 1197 aa12.48□□□□□ -0.41
PDLIM3-209ENST00000514142 RDXP35241 583 aaKnown RBP12.48□□□□□ -0.41
PDLIM3-209ENST00000514142 CDR1P51861 262 aa12.48□□□□□ -0.41
PDLIM3-209ENST00000514142 CCDC112Q8NEF3 446 aa12.47□□□□□ -0.41
PDLIM3-209ENST00000514142 COG3Q96JB2 828 aa12.47□□□□□ -0.41
PDLIM3-209ENST00000514142 BRD4O60885 1362 aaPredicted RBP12.47□□□□□ -0.41
PDLIM3-209ENST00000514142 ROCK1Q13464 1354 aa12.47□□□□□ -0.41
PDLIM3-209ENST00000514142 RABEP1Q15276 862 aa12.47□□□□□ -0.41
PDLIM3-209ENST00000514142 PDS5BQ9NTI5 1447 aa12.47□□□□□ -0.41
PDLIM3-209ENST00000514142 PRDM10Q9NQV6 1147 aa12.47□□□□□ -0.41
PDLIM3-209ENST00000514142 TOP2AP11388 1531 aaKnown RBP12.47□□□□□ -0.41
PDLIM3-209ENST00000514142 RUSC2Q8N2Y8 1516 aa12.47□□□□□ -0.41
PDLIM3-209ENST00000514142 CCDC47Q96A33 483 aaKnown RBP12.46□□□□□ -0.41
PDLIM3-209ENST00000514142 OLFM4Q6UX06 510 aa12.46□□□□□ -0.41
PDLIM3-209ENST00000514142 CAGE1Q8TC20 777 aa12.46□□□□□ -0.41
PDLIM3-209ENST00000514142 ERCC4Q92889 916 aaPredicted RBP12.46□□□□□ -0.41
PDLIM3-209ENST00000514142 EVC2Q86UK5 1308 aa12.46□□□□□ -0.41
PDLIM3-209ENST00000514142 BCAR3O75815 825 aa12.46□□□□□ -0.41
PDLIM3-209ENST00000514142 TRDNQ13061 729 aa12.46□□□□□ -0.42
PDLIM3-209ENST00000514142 G3BP1Q13283 466 aaKnown RBP eCLIP12.46□□□□□ -0.42
PDLIM3-209ENST00000514142 SMARCA2P51531 1590 aa12.46□□□□□ -0.42
PDLIM3-209ENST00000514142 TSPYL1Q9H0U9 437 aa12.45□□□□□ -0.42
PDLIM3-209ENST00000514142 NEXNQ0ZGT2 675 aa12.45□□□□□ -0.42
PDLIM3-209ENST00000514142 TEFQ10587 303 aa12.45□□□□□ -0.42
PDLIM3-209ENST00000514142 LRRFIP1Q32MZ4 808 aaKnown RBP12.45□□□□□ -0.42
PDLIM3-209ENST00000514142 NFXL1Q6ZNB6 911 aa12.45□□□□□ -0.42
PDLIM3-209ENST00000514142 ERICH4A6NGS2 130 aa12.45□□□□□ -0.42
PDLIM3-209ENST00000514142 AXDND1Q5T1B0 1012 aaPredicted RBP12.45□□□□□ -0.42
PDLIM3-209ENST00000514142 KINO60870 393 aaKnown RBP12.44□□□□□ -0.42
PDLIM3-209ENST00000514142 GNAI1P63096 354 aa12.44□□□□□ -0.42
PDLIM3-209ENST00000514142 ZSCAN30Q86W11 494 aa12.44□□□□□ -0.42
PDLIM3-209ENST00000514142 WASHC2CQ9Y4E1 1318 aa12.44□□□□□ -0.42
PDLIM3-209ENST00000514142 ERC2O15083 957 aa12.44□□□□□ -0.42
PDLIM3-209ENST00000514142 CCDC191Q8NCU4 936 aa12.44□□□□□ -0.42
PDLIM3-209ENST00000514142 MINK1Q8N4C8 1332 aaPredicted RBP12.44□□□□□ -0.42
PDLIM3-209ENST00000514142 K7ELQ4 463 aaPredicted RBP12.44□□□□□ -0.42
PDLIM3-209ENST00000514142 RSPH4AQ5TD94 716 aa12.44□□□□□ -0.42
PDLIM3-209ENST00000514142 C1orf115Q9H7X2 142 aa12.44□□□□□ -0.42
PDLIM3-209ENST00000514142 HMOX1P09601 288 aa12.43□□□□□ -0.42
PDLIM3-209ENST00000514142 HSP90AB3PQ58FF7 597 aa12.43□□□□□ -0.42
PDLIM3-209ENST00000514142 CCDC184Q52MB2 194 aa12.43□□□□□ -0.42
PDLIM3-209ENST00000514142 TCP11L2Q8N4U5 519 aa12.43□□□□□ -0.42
PDLIM3-209ENST00000514142 CEBPZQ03701 1054 aaKnown RBP12.43□□□□□ -0.42
PDLIM3-209ENST00000514142 PDE3AQ14432 1141 aa12.42□□□□□ -0.42
PDLIM3-209ENST00000514142 SAFBQ15424 915 aaKnown RBP eCLIP12.42□□□□□ -0.42
PDLIM3-209ENST00000514142 PDCL2Q8N4E4 241 aa12.42□□□□□ -0.42
PDLIM3-209ENST00000514142 CCDC192P0DO97 292 aa12.42□□□□□ -0.42
PDLIM3-209ENST00000514142 GTF2E1P29083 439 aaPredicted RBP12.42□□□□□ -0.42
PDLIM3-209ENST00000514142 MCM2P49736 904 aa12.42□□□□□ -0.42
PDLIM3-209ENST00000514142 FBXO3Q9UK99 471 aa12.42□□□□□ -0.42
PDLIM3-209ENST00000514142 KDM4AO75164 1064 aa12.42□□□□□ -0.42
PDLIM3-209ENST00000514142 CBX1P83916 185 aa12.42□□□□□ -0.42
PDLIM3-209ENST00000514142 DCTN1Q14203 1278 aa12.41□□□□□ -0.42
PDLIM3-209ENST00000514142 CWC22Q9HCG8 908 aaKnown RBP12.41□□□□□ -0.42
PDLIM3-209ENST00000514142 HSP90AB4PQ58FF6 505 aa12.41□□□□□ -0.42
PDLIM3-209ENST00000514142 C1orf141Q5JVX7 400 aa12.41□□□□□ -0.42
PDLIM3-209ENST00000514142 EXOSC9Q06265 439 aaKnown RBP12.4□□□□□ -0.42
PDLIM3-209ENST00000514142 FAM177A1Q8N128 213 aaPredicted RBP12.4□□□□□ -0.42
PDLIM3-209ENST00000514142 PLCD4Q9BRC7 762 aa12.4□□□□□ -0.42
PDLIM3-209ENST00000514142 ATAD2BQ9ULI0 1458 aa12.4□□□□□ -0.42
PDLIM3-209ENST00000514142 CCP110O43303 1012 aa12.4□□□□□ -0.42
PDLIM3-209ENST00000514142 PSMA5P28066 241 aa12.4□□□□□ -0.42
PDLIM3-209ENST00000514142 TSPYL4Q9UJ04 414 aa12.4□□□□□ -0.42
PDLIM3-209ENST00000514142 RALYLQ86SE5 291 aaKnown RBP12.4□□□□□ -0.42
PDLIM3-209ENST00000514142 SKAP1Q86WV1 359 aa12.4□□□□□ -0.42
PDLIM3-209ENST00000514142 CT47B1P0C2W7 299 aaPredicted RBP12.39□□□□□ -0.43
PDLIM3-209ENST00000514142 BRPF1P55201 1214 aaPredicted RBP12.39□□□□□ -0.43
PDLIM3-209ENST00000514142 PDCP20941 246 aa12.39□□□□□ -0.43
PDLIM3-209ENST00000514142 CNTROBQ8N137 903 aa12.39□□□□□ -0.43
PDLIM3-209ENST00000514142 PNISRQ8TF01 805 aaKnown RBP12.39□□□□□ -0.43
PDLIM3-209ENST00000514142 TNMDQ9H2S6 317 aa12.39□□□□□ -0.43
PDLIM3-209ENST00000514142 SMARCA4P51532 1647 aa12.39□□□□□ -0.43
PDLIM3-209ENST00000514142 PPP2R1AP30153 589 aa12.38□□□□□ -0.43
PDLIM3-209ENST00000514142 GGNBP2Q9H3C7 697 aa12.38□□□□□ -0.43
PDLIM3-209ENST00000514142 SMG6Q86US8 1419 aaKnown RBP12.38□□□□□ -0.43
PDLIM3-209ENST00000514142 OFD1O75665 1012 aa12.38□□□□□ -0.43
PDLIM3-209ENST00000514142 UBTFL1P0CB47 393 aaPredicted RBP12.38□□□□□ -0.43
PDLIM3-209ENST00000514142 ATP2B1P20020 1258 aa12.38□□□□□ -0.43
PDLIM3-209ENST00000514142 DHX16O60231 1041 aaKnown RBP12.38□□□□□ -0.43
PDLIM3-209ENST00000514142 SYCE3A1L190 88 aa12.38□□□□□ -0.43
PDLIM3-209ENST00000514142 RAD21O60216 631 aa12.38□□□□□ -0.43
PDLIM3-209ENST00000514142 MTHFSP49914 203 aa12.38□□□□□ -0.43
PDLIM3-209ENST00000514142 GCC1Q96CN9 775 aa12.38□□□□□ -0.43
PDLIM3-209ENST00000514142 NEUROD6Q96NK8 337 aa12.38□□□□□ -0.43
PDLIM3-209ENST00000514142 FSD1Q9BTV5 496 aa12.38□□□□□ -0.43
PDLIM3-209ENST00000514142 ZMYND15Q9H091 742 aa12.38□□□□□ -0.43
PDLIM3-209ENST00000514142 CIZ1Q9ULV3 898 aaPredicted RBP12.38□□□□□ -0.43
PDLIM3-209ENST00000514142 UACAQ9BZF9 1416 aa12.38□□□□□ -0.43
PDLIM3-209ENST00000514142 ERICH2A1L162 156 aa12.37□□□□□ -0.43
PDLIM3-209ENST00000514142 G3V3G9 751 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms