RNA–Protein interactions for RNA: ENST00000513761.5

CLCN3-209, Transcript of chloride voltage-gated channel 3, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CLCN3, Length 6,692 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-209ENST00000513761 C8orf34Q49A92 452 aa9.46□□□□□ -0.9
CLCN3-209ENST00000513761 COG3Q96JB2 828 aa9.46□□□□□ -0.9
CLCN3-209ENST00000513761 HECW1Q76N89 1606 aa9.46□□□□□ -0.9
CLCN3-209ENST00000513761 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.46□□□□□ -0.9
CLCN3-209ENST00000513761 NINLQ9Y2I6 1382 aa9.46□□□□□ -0.9
CLCN3-209ENST00000513761 CHD1LQ86WJ1 897 aa9.46□□□□□ -0.9
CLCN3-209ENST00000513761 WDR63Q8IWG1 891 aa9.46□□□□□ -0.9
CLCN3-209ENST00000513761 TNNT3P45378 269 aaPredicted RBP9.45□□□□□ -0.9
CLCN3-209ENST00000513761 RARSP54136 660 aaKnown RBP9.45□□□□□ -0.9
CLCN3-209ENST00000513761 AFAP1Q8N556 730 aa9.45□□□□□ -0.9
CLCN3-209ENST00000513761 GOLGA6L19H0YKK7 550 aa9.45□□□□□ -0.9
CLCN3-209ENST00000513761 RABEP1Q15276 862 aa9.45□□□□□ -0.9
CLCN3-209ENST00000513761 ISY1Q9ULR0 285 aaKnown RBP9.45□□□□□ -0.9
CLCN3-209ENST00000513761 TROQ12816 1431 aaPredicted RBP9.45□□□□□ -0.9
CLCN3-209ENST00000513761 AMPHP49418 695 aa9.45□□□□□ -0.9
CLCN3-209ENST00000513761 MAP7D2Q96T17 732 aa9.45□□□□□ -0.9
CLCN3-209ENST00000513761 DIAPH3Q9NSV4 1193 aa9.45□□□□□ -0.9
CLCN3-209ENST00000513761 LRPPRCP42704 1394 aaKnown RBP9.44□□□□□ -0.9
CLCN3-209ENST00000513761 PANK2Q9BZ23 570 aa9.44□□□□□ -0.9
CLCN3-209ENST00000513761 NKTRP30414 1462 aaKnown RBP9.44□□□□□ -0.9
CLCN3-209ENST00000513761 BECN2A8MW95 431 aa9.44□□□□□ -0.9
CLCN3-209ENST00000513761 H3BQV1 296 aa9.44□□□□□ -0.9
CLCN3-209ENST00000513761 PRKAR2BP31323 418 aa9.44□□□□□ -0.9
CLCN3-209ENST00000513761 IFFO2Q5TF58 517 aa9.44□□□□□ -0.9
CLCN3-209ENST00000513761 STAC3Q96MF2 364 aa9.44□□□□□ -0.9
CLCN3-209ENST00000513761 CCDC27Q2M243 656 aa9.44□□□□□ -0.9
CLCN3-209ENST00000513761 TMEM57Q8N5G2 664 aa9.44□□□□□ -0.9
CLCN3-209ENST00000513761 UBE2Q2Q8WVN8 375 aa9.44□□□□□ -0.9
CLCN3-209ENST00000513761 SMC3Q9UQE7 1217 aa9.44□□□□□ -0.9
CLCN3-209ENST00000513761 CCDC9Q9Y3X0 531 aaKnown RBP9.44□□□□□ -0.9
CLCN3-209ENST00000513761 UQCRHLA0A096LP55 91 aa9.44□□□□□ -0.9
CLCN3-209ENST00000513761 UQCRHP07919 91 aa9.44□□□□□ -0.9
CLCN3-209ENST00000513761 GCC1Q96CN9 775 aa9.44□□□□□ -0.9
CLCN3-209ENST00000513761 HDGFP51858 240 aaKnown RBP9.43□□□□□ -0.9
CLCN3-209ENST00000513761 FKBP5Q13451 457 aaPredicted RBP9.43□□□□□ -0.9
CLCN3-209ENST00000513761 IFT57Q9NWB7 429 aa9.43□□□□□ -0.9
CLCN3-209ENST00000513761 TPM4P67936 248 aa9.43□□□□□ -0.9
CLCN3-209ENST00000513761 TSPY26PQ9H489 355 aa9.43□□□□□ -0.9
CLCN3-209ENST00000513761 CIZ1Q9ULV3 898 aaPredicted RBP9.43□□□□□ -0.9
CLCN3-209ENST00000513761 MBD3O95983 291 aa9.42□□□□□ -0.9
CLCN3-209ENST00000513761 TNPO1Q92973 898 aaKnown RBP9.42□□□□□ -0.9
CLCN3-209ENST00000513761 DISP3Q9P2K9 1392 aa9.42□□□□□ -0.9
CLCN3-209ENST00000513761 A0A0U1RQG5 324 aaPredicted RBP9.42□□□□□ -0.9
CLCN3-209ENST00000513761 XRCC6P12956 609 aaKnown RBP eCLIP9.42□□□□□ -0.92e-6■■■■■ 34.5
CLCN3-209ENST00000513761 SF3A1Q15459 793 aaKnown RBP9.42□□□□□ -0.9
CLCN3-209ENST00000513761 ZSCAN30Q86W11 494 aa9.42□□□□□ -0.9
CLCN3-209ENST00000513761 EIF2S2P20042 333 aaKnown RBP9.42□□□□□ -0.9
CLCN3-209ENST00000513761 BICD2Q8TD16 824 aa9.42□□□□□ -0.9
CLCN3-209ENST00000513761 FBXW7Q969H0 707 aa9.42□□□□□ -0.9
CLCN3-209ENST00000513761 TBC1D32Q96NH3 1257 aa9.42□□□□□ -0.9
CLCN3-209ENST00000513761 FAM184AQ8NB25 1140 aa9.42□□□□□ -0.9
CLCN3-209ENST00000513761 PLEKHH2Q8IVE3 1493 aa9.42□□□□□ -0.9
CLCN3-209ENST00000513761 TWISTNBQ3B726 338 aaPredicted RBP9.41□□□□□ -0.9
CLCN3-209ENST00000513761 MTERF4Q7Z6M4 381 aaKnown RBP9.41□□□□□ -0.9
CLCN3-209ENST00000513761 NGDNQ8NEJ9 315 aaKnown RBP9.41□□□□□ -0.9
CLCN3-209ENST00000513761 ARHGAP5Q13017 1502 aa9.41□□□□□ -0.9
CLCN3-209ENST00000513761 SSFA2P28290 1259 aa9.41□□□□□ -0.9
CLCN3-209ENST00000513761 BIVM-ERCC5R4GMW8 1640 aa9.41□□□□□ -0.9
CLCN3-209ENST00000513761 FIBPO43427 364 aa9.41□□□□□ -0.9
CLCN3-209ENST00000513761 SPC24Q8NBT2 197 aa9.41□□□□□ -0.9
CLCN3-209ENST00000513761 SSH1Q8WYL5 1049 aa9.41□□□□□ -0.9
CLCN3-209ENST00000513761 SEC24BO95487 1268 aa9.4□□□□□ -0.9
CLCN3-209ENST00000513761 ZKSCAN1P17029 563 aaPredicted RBP9.4□□□□□ -0.9
CLCN3-209ENST00000513761 HMGXB3Q12766 1538 aa9.4□□□□□ -0.9
CLCN3-209ENST00000513761 TULP1O00294 542 aaPredicted RBP9.4□□□□□ -0.9
CLCN3-209ENST00000513761 GRIN2BQ13224 1484 aa9.4□□□□□ -0.9
CLCN3-209ENST00000513761 CAMSAP2Q08AD1 1489 aa9.4□□□□□ -0.9
CLCN3-209ENST00000513761 DHX29Q7Z478 1369 aaKnown RBP9.4□□□□□ -0.9
CLCN3-209ENST00000513761 SYCE3A1L190 88 aa9.4□□□□□ -0.91
CLCN3-209ENST00000513761 FOSBP53539 338 aa9.4□□□□□ -0.91
CLCN3-209ENST00000513761 CCAR2Q8N163 923 aaKnown RBP9.4□□□□□ -0.91
CLCN3-209ENST00000513761 TSPYL4Q9UJ04 414 aa9.4□□□□□ -0.91
CLCN3-209ENST00000513761 SCAPERQ9BY12 1400 aa9.39□□□□□ -0.91
CLCN3-209ENST00000513761 XPCQ01831 940 aaPredicted RBP9.39□□□□□ -0.91
CLCN3-209ENST00000513761 ZNF330Q9Y3S2 320 aaPredicted RBP9.39□□□□□ -0.91
CLCN3-209ENST00000513761 PCDHB15Q9Y5E8 787 aa9.39□□□□□ -0.91
CLCN3-209ENST00000513761 RUFY2Q8WXA3 655 aa9.39□□□□□ -0.91
CLCN3-209ENST00000513761 CWC22Q9HCG8 908 aaKnown RBP9.39□□□□□ -0.91
CLCN3-209ENST00000513761 ABCA10Q8WWZ4 1543 aa9.39□□□□□ -0.91
CLCN3-209ENST00000513761 CT47B1P0C2W7 299 aaPredicted RBP9.39□□□□□ -0.91
CLCN3-209ENST00000513761 NSD3Q9BZ95 1437 aa9.38□□□□□ -0.91
CLCN3-209ENST00000513761 TMPOP42166 694 aaKnown RBP9.38□□□□□ -0.91
CLCN3-209ENST00000513761 SASS6Q6UVJ0 657 aa9.38□□□□□ -0.91
CLCN3-209ENST00000513761 GORABQ5T7V8 394 aa9.38□□□□□ -0.91
CLCN3-209ENST00000513761 CREBRFQ8IUR6 639 aa9.38□□□□□ -0.91
CLCN3-209ENST00000513761 THUMPD2Q9BTF0 503 aaKnown RBP9.38□□□□□ -0.91
CLCN3-209ENST00000513761 ZMYND15Q9H091 742 aa9.38□□□□□ -0.91
CLCN3-209ENST00000513761 ERC2O15083 957 aa9.37□□□□□ -0.91
CLCN3-209ENST00000513761 IFIT2P09913 472 aaKnown RBP9.37□□□□□ -0.91
CLCN3-209ENST00000513761 PRDM10Q9NQV6 1147 aa9.37□□□□□ -0.91
CLCN3-209ENST00000513761 TRIM27P14373 513 aa9.37□□□□□ -0.91
CLCN3-209ENST00000513761 C9orf78Q9NZ63 289 aaPredicted RBP9.37□□□□□ -0.91
CLCN3-209ENST00000513761 HDAC5Q9UQL6 1122 aa9.37□□□□□ -0.91
CLCN3-209ENST00000513761 TNNQ9UQP3 1299 aa9.37□□□□□ -0.91
CLCN3-209ENST00000513761 BICRAQ9NZM4 1560 aa9.37□□□□□ -0.91
CLCN3-209ENST00000513761 KIF3AQ9Y496 699 aa9.37□□□□□ -0.91
CLCN3-209ENST00000513761 DNMBPQ6XZF7 1577 aa9.37□□□□□ -0.91
CLCN3-209ENST00000513761 HMGN5P82970 282 aaKnown RBP9.37□□□□□ -0.91
CLCN3-209ENST00000513761 TRIM5Q9C035 493 aa9.37□□□□□ -0.91
CLCN3-209ENST00000513761 CLCN1P35523 988 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms