RNA–Protein interactions for RNA: ENST00000513600.5

TRAPPC11-210, Transcript of trafficking protein particle complex 11, humanhuman

TSL 3

Gene TRAPPC11, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC11-210ENST00000513600 SPTLC1O15269 473 aa13.63□□□□□ -0.23
TRAPPC11-210ENST00000513600 S1PR4O95977 384 aa13.62□□□□□ -0.23
TRAPPC11-210ENST00000513600 MSS51Q4VC12 460 aa13.62□□□□□ -0.23
TRAPPC11-210ENST00000513600 MYSM1Q5VVJ2 828 aa13.62□□□□□ -0.23
TRAPPC11-210ENST00000513600 RIC3Q7Z5B4 369 aa13.62□□□□□ -0.23
TRAPPC11-210ENST00000513600 PCDHGC3Q9UN70 934 aa13.62□□□□□ -0.23
TRAPPC11-210ENST00000513600 FAM160A2Q8N612 972 aaPredicted RBP13.61□□□□□ -0.23
TRAPPC11-210ENST00000513600 USB1Q9BQ65 265 aaKnown RBP13.61□□□□□ -0.23
TRAPPC11-210ENST00000513600 PLEKHG3A1L390 1219 aa13.58□□□□□ -0.24
TRAPPC11-210ENST00000513600 C6orf229H3BNL8 230 aa13.58□□□□□ -0.24
TRAPPC11-210ENST00000513600 RETREG3Q86VR2 466 aa13.58□□□□□ -0.24
TRAPPC11-210ENST00000513600 RNF223E7ERA6 249 aa13.57□□□□□ -0.24
TRAPPC11-210ENST00000513600 TUSC1Q2TAM9 212 aa13.57□□□□□ -0.24
TRAPPC11-210ENST00000513600 SYMPKQ92797 1274 aaKnown RBP13.57□□□□□ -0.24
TRAPPC11-210ENST00000513600 SPDYE5A6NIY4 337 aa13.56□□□□□ -0.24
TRAPPC11-210ENST00000513600 ANKLE1Q8NAG6 615 aa13.56□□□□□ -0.24
TRAPPC11-210ENST00000513600 CLK2P49760 499 aaKnown RBP13.55□□□□□ -0.24
TRAPPC11-210ENST00000513600 MTMR2Q13614 643 aa13.55□□□□□ -0.24
TRAPPC11-210ENST00000513600 SH3D19Q5HYK7 790 aa13.55□□□□□ -0.24
TRAPPC11-210ENST00000513600 SKIV2LQ15477 1246 aaKnown RBP13.54□□□□□ -0.24
TRAPPC11-210ENST00000513600 PRPF38BQ5VTL8 546 aaKnown RBP13.54□□□□□ -0.24
TRAPPC11-210ENST00000513600 LIMD1Q9UGP4 676 aa13.54□□□□□ -0.24
TRAPPC11-210ENST00000513600 PCDHB15Q9Y5E8 787 aa13.54□□□□□ -0.24
TRAPPC11-210ENST00000513600 PPEF1O14829 653 aaPredicted RBP13.53□□□□□ -0.24
TRAPPC11-210ENST00000513600 ZBTB3Q9H5J0 574 aa13.53□□□□□ -0.24
TRAPPC11-210ENST00000513600 PRDM9Q9NQV7 894 aa13.53□□□□□ -0.24
TRAPPC11-210ENST00000513600 POLR3EQ9NVU0 708 aa13.53□□□□□ -0.24
TRAPPC11-210ENST00000513600 MMP16P51512 607 aa13.52□□□□□ -0.25
TRAPPC11-210ENST00000513600 IL27Q8NEV9 243 aa13.52□□□□□ -0.25
TRAPPC11-210ENST00000513600 CSPP1Q1MSJ5 1256 aa13.51□□□□□ -0.25
TRAPPC11-210ENST00000513600 DXOO77932 396 aaKnown RBP13.5□□□□□ -0.25
TRAPPC11-210ENST00000513600 JUNDP17535 347 aa13.49□□□□□ -0.25
TRAPPC11-210ENST00000513600 HRCP23327 699 aa13.49□□□□□ -0.25
TRAPPC11-210ENST00000513600 PRR7Q8TB68 274 aa13.48□□□□□ -0.25
TRAPPC11-210ENST00000513600 GOPCQ9HD26 462 aa13.48□□□□□ -0.25
TRAPPC11-210ENST00000513600 LILRB3O75022 631 aa13.47□□□□□ -0.25
TRAPPC11-210ENST00000513600 PRKD2Q9BZL6 878 aa13.47□□□□□ -0.25
TRAPPC11-210ENST00000513600 FCF1Q9Y324 198 aaKnown RBP13.47□□□□□ -0.25
TRAPPC11-210ENST00000513600 V9GY48 417 aaPredicted RBP13.47□□□□□ -0.25
TRAPPC11-210ENST00000513600 NUTM2BA6NNL0 878 aaPredicted RBP13.46□□□□□ -0.25
TRAPPC11-210ENST00000513600 NUTM2EB1AL46 878 aaPredicted RBP13.46□□□□□ -0.25
TRAPPC11-210ENST00000513600 NUTM2DQ5VT03 806 aaPredicted RBP13.46□□□□□ -0.25
TRAPPC11-210ENST00000513600 NUTM2AQ8IVF1 878 aaPredicted RBP13.46□□□□□ -0.25
TRAPPC11-210ENST00000513600 CABLES1Q8TDN4 633 aa13.46□□□□□ -0.25
TRAPPC11-210ENST00000513600 QPCTQ16769 361 aa13.45□□□□□ -0.26
TRAPPC11-210ENST00000513600 DESI1Q6ICB0 168 aa13.45□□□□□ -0.26
TRAPPC11-210ENST00000513600 ATP1B4Q9UN42 357 aaPredicted RBP13.45□□□□□ -0.26
TRAPPC11-210ENST00000513600 SLC19A1P41440 591 aa13.43□□□□□ -0.26
TRAPPC11-210ENST00000513600 PROCA1Q8NCQ7 364 aaPredicted RBP13.43□□□□□ -0.26
TRAPPC11-210ENST00000513600 CFAP99D6REC4 459 aa13.42□□□□□ -0.26
TRAPPC11-210ENST00000513600 PCMTD1Q96MG8 357 aaPredicted RBP13.42□□□□□ -0.26
TRAPPC11-210ENST00000513600 PLA2G2CQ5R387 149 aa13.41□□□□□ -0.26
TRAPPC11-210ENST00000513600 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.41□□□□□ -0.26
TRAPPC11-210ENST00000513600 RPIAP49247 311 aa13.39□□□□□ -0.27
TRAPPC11-210ENST00000513600 PTPRNQ16849 979 aa13.39□□□□□ -0.27
TRAPPC11-210ENST00000513600 RTL5Q5HYW3 569 aaPredicted RBP13.39□□□□□ -0.27
TRAPPC11-210ENST00000513600 EMID1Q96A84 441 aaPredicted RBP13.39□□□□□ -0.27
TRAPPC11-210ENST00000513600 LIAT1Q6ZQX7 453 aa13.38□□□□□ -0.27
TRAPPC11-210ENST00000513600 CCDC24Q8N4L8 307 aa13.38□□□□□ -0.27
TRAPPC11-210ENST00000513600 NUDT12Q9BQG2 462 aa13.38□□□□□ -0.27
TRAPPC11-210ENST00000513600 ZBTB24O43167 697 aaPredicted RBP13.37□□□□□ -0.27
TRAPPC11-210ENST00000513600 PPP2R2DQ66LE6 453 aa13.37□□□□□ -0.27
TRAPPC11-210ENST00000513600 CCNYL3P0C7X3 344 aa13.36□□□□□ -0.27
TRAPPC11-210ENST00000513600 LYPD8Q6UX82 237 aa13.36□□□□□ -0.27
TRAPPC11-210ENST00000513600 HELBQ8NG08 1087 aaPredicted RBP13.36□□□□□ -0.27
TRAPPC11-210ENST00000513600 SPRYD7Q5W111 196 aa13.35□□□□□ -0.27
TRAPPC11-210ENST00000513600 CD2BP2O95400 341 aaKnown RBP13.34□□□□□ -0.27
TRAPPC11-210ENST00000513600 TSC1Q92574 1164 aa13.34□□□□□ -0.27
TRAPPC11-210ENST00000513600 ZNF598Q86UK7 904 aaKnown RBP13.33□□□□□ -0.28
TRAPPC11-210ENST00000513600 EVA1BQ9NVM1 165 aa13.33□□□□□ -0.28
TRAPPC11-210ENST00000513600 KCNH2Q12809 1159 aa13.3□□□□□ -0.28
TRAPPC11-210ENST00000513600 FBXO31Q5XUX0 539 aaPredicted RBP13.3□□□□□ -0.28
TRAPPC11-210ENST00000513600 ZNF697Q5TEC3 545 aa13.29□□□□□ -0.28
TRAPPC11-210ENST00000513600 TRIM32Q13049 653 aa13.28□□□□□ -0.28
TRAPPC11-210ENST00000513600 RFC5P40937 340 aa13.27□□□□□ -0.29
TRAPPC11-210ENST00000513600 PTCRAQ6ISU1 281 aaPredicted RBP13.27□□□□□ -0.29
TRAPPC11-210ENST00000513600 PER1O15534 1290 aaPredicted RBP13.26□□□□□ -0.29
TRAPPC11-210ENST00000513600 CTHP32929 405 aa13.26□□□□□ -0.29
TRAPPC11-210ENST00000513600 IRX2Q9BZI1 471 aaPredicted RBP13.26□□□□□ -0.29
TRAPPC11-210ENST00000513600 F12P00748 615 aaPredicted RBP13.25□□□□□ -0.29
TRAPPC11-210ENST00000513600 CTDSPL2Q05D32 466 aa13.25□□□□□ -0.29
TRAPPC11-210ENST00000513600 AP1G2O75843 785 aa13.24□□□□□ -0.29
TRAPPC11-210ENST00000513600 TMEM259Q4ZIN3 620 aa13.24□□□□□ -0.29
TRAPPC11-210ENST00000513600 UNC93B1Q9H1C4 597 aa13.24□□□□□ -0.29
TRAPPC11-210ENST00000513600 WNT7BP56706 349 aa13.21□□□□□ -0.29
TRAPPC11-210ENST00000513600 MAP10Q9P2G4 905 aa13.21□□□□□ -0.29
TRAPPC11-210ENST00000513600 LAPTM4AQ15012 233 aa13.2□□□□□ -0.3
TRAPPC11-210ENST00000513600 PDZRN3Q9UPQ7 1066 aa13.2□□□□□ -0.3
TRAPPC11-210ENST00000513600 GFRA3O60609 400 aa13.19□□□□□ -0.3
TRAPPC11-210ENST00000513600 PRR20EP86478 221 aa13.19□□□□□ -0.3
TRAPPC11-210ENST00000513600 PRR20CP86479 221 aa13.19□□□□□ -0.3
TRAPPC11-210ENST00000513600 PRR20DP86480 221 aa13.19□□□□□ -0.3
TRAPPC11-210ENST00000513600 PRR20BP86481 221 aa13.19□□□□□ -0.3
TRAPPC11-210ENST00000513600 PRR20AP86496 221 aa13.19□□□□□ -0.3
TRAPPC11-210ENST00000513600 GDF9O60383 454 aa13.18□□□□□ -0.3
TRAPPC11-210ENST00000513600 TRIM67Q6ZTA4 783 aa13.18□□□□□ -0.3
TRAPPC11-210ENST00000513600 FOXC1Q12948 553 aa13.17□□□□□ -0.3
TRAPPC11-210ENST00000513600 ARMC2Q8NEN0 867 aa13.17□□□□□ -0.3
TRAPPC11-210ENST00000513600 LRRN4Q8WUT4 740 aa13.17□□□□□ -0.3
TRAPPC11-210ENST00000513600 PKD2L1Q9P0L9 805 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms