RNA–Protein interactions for RNA: ENST00000513578.5

RNF4-220, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-220ENST00000513578 PNISRQ8TF01 805 aaKnown RBP11.37□□□□□ -0.59
RNF4-220ENST00000513578 TECPR2O15040 1411 aa11.36□□□□□ -0.59
RNF4-220ENST00000513578 SETD1BQ9UPS6 1966 aaKnown RBP11.36□□□□□ -0.59
RNF4-220ENST00000513578 KNSTRNQ9Y448 316 aa11.36□□□□□ -0.59
RNF4-220ENST00000513578 CPS1P31327 1500 aa11.35□□□□□ -0.59
RNF4-220ENST00000513578 TMC1Q8TDI8 760 aa11.35□□□□□ -0.59
RNF4-220ENST00000513578 GTF3C3Q9Y5Q9 886 aa11.35□□□□□ -0.59
RNF4-220ENST00000513578 PLEKHG1Q9ULL1 1385 aa11.35□□□□□ -0.59
RNF4-220ENST00000513578 MED14O60244 1454 aa11.35□□□□□ -0.59
RNF4-220ENST00000513578 FAM135BQ49AJ0 1406 aa11.35□□□□□ -0.59
RNF4-220ENST00000513578 ZNF142P52746 1687 aaPredicted RBP11.34□□□□□ -0.59
RNF4-220ENST00000513578 RIMS1Q86UR5 1692 aaKnown RBP11.34□□□□□ -0.59
RNF4-220ENST00000513578 ZBED9Q6R2W3 1325 aa11.34□□□□□ -0.59
RNF4-220ENST00000513578 DIP2AQ14689 1571 aa11.33□□□□□ -0.6
RNF4-220ENST00000513578 HNRNPUQ00839 825 aaKnown RBP eCLIP11.33□□□□□ -0.6
RNF4-220ENST00000513578 ADAMTS13Q76LX8 1427 aa11.33□□□□□ -0.6
RNF4-220ENST00000513578 ATAD2Q6PL18 1390 aa11.32□□□□□ -0.6
RNF4-220ENST00000513578 FAM9BQ8IZU0 186 aa11.32□□□□□ -0.6
RNF4-220ENST00000513578 ANKRD26Q9UPS8 1709 aa11.32□□□□□ -0.6
RNF4-220ENST00000513578 ANKRD36BQ8N2N9 1353 aa11.31□□□□□ -0.6
RNF4-220ENST00000513578 CERKQ8TCT0 537 aa11.31□□□□□ -0.6
RNF4-220ENST00000513578 CARD14Q9BXL6 1004 aa11.31□□□□□ -0.6
RNF4-220ENST00000513578 CEP170BQ9Y4F5 1589 aaPredicted RBP11.31□□□□□ -0.6
RNF4-220ENST00000513578 NSD2O96028 1365 aa11.3□□□□□ -0.6
RNF4-220ENST00000513578 ADGRB2O60241 1585 aa11.3□□□□□ -0.6
RNF4-220ENST00000513578 CC2D1BQ5T0F9 858 aaKnown RBP11.3□□□□□ -0.6
RNF4-220ENST00000513578 THEMISQ8N1K5 641 aaPredicted RBP11.3□□□□□ -0.6
RNF4-220ENST00000513578 PRAM1Q96QH2 718 aa11.3□□□□□ -0.6
RNF4-220ENST00000513578 METP08581 1390 aa11.29□□□□□ -0.6
RNF4-220ENST00000513578 PPP2R1AP30153 589 aa11.29□□□□□ -0.6
RNF4-220ENST00000513578 CEBPAP49715 358 aaPredicted RBP11.29□□□□□ -0.6
RNF4-220ENST00000513578 POGKQ9P215 609 aa11.29□□□□□ -0.6
RNF4-220ENST00000513578 STK26Q9P289 416 aa11.29□□□□□ -0.6
RNF4-220ENST00000513578 EID1Q9Y6B2 187 aa11.28□□□□□ -0.6
RNF4-220ENST00000513578 BLMP54132 1417 aaPredicted RBP11.27□□□□□ -0.6
RNF4-220ENST00000513578 NSD3Q9BZ95 1437 aa11.27□□□□□ -0.6
RNF4-220ENST00000513578 ATP7BP35670 1465 aa11.27□□□□□ -0.6
RNF4-220ENST00000513578 LTKP29376 864 aa11.27□□□□□ -0.61
RNF4-220ENST00000513578 SLC12A5Q9H2X9 1139 aa11.27□□□□□ -0.61
RNF4-220ENST00000513578 TBX22Q9Y458 520 aa11.27□□□□□ -0.61
RNF4-220ENST00000513578 CD163L1Q9NR16 1453 aa11.26□□□□□ -0.61
RNF4-220ENST00000513578 KIF20BQ96Q89 1820 aa11.26□□□□□ -0.61
RNF4-220ENST00000513578 TXNDC2Q86VQ3 553 aa11.26□□□□□ -0.61
RNF4-220ENST00000513578 CGNL1Q0VF96 1302 aa11.26□□□□□ -0.61
RNF4-220ENST00000513578 PIK3R4Q99570 1358 aa11.26□□□□□ -0.61
RNF4-220ENST00000513578 XRN1Q8IZH2 1706 aaKnown RBP11.26□□□□□ -0.61
RNF4-220ENST00000513578 CDK19Q9BWU1 502 aa11.25□□□□□ -0.61
RNF4-220ENST00000513578 CABP2Q9NPB3 220 aa11.25□□□□□ -0.61
RNF4-220ENST00000513578 MINK1Q8N4C8 1332 aaPredicted RBP11.25□□□□□ -0.61
RNF4-220ENST00000513578 AKAP12Q02952 1782 aa11.25□□□□□ -0.61
RNF4-220ENST00000513578 POLR3AO14802 1390 aaPredicted RBP11.25□□□□□ -0.61
RNF4-220ENST00000513578 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.24□□□□□ -0.61
RNF4-220ENST00000513578 SRPK2P78362 688 aaKnown RBP11.24□□□□□ -0.61
RNF4-220ENST00000513578 CNGB1Q14028 1251 aaPredicted RBP11.24□□□□□ -0.61
RNF4-220ENST00000513578 TERF2IPQ9NYB0 399 aa11.24□□□□□ -0.61
RNF4-220ENST00000513578 PLEKHH1Q9ULM0 1364 aa11.24□□□□□ -0.61
RNF4-220ENST00000513578 PTCH1Q13635 1447 aa11.24□□□□□ -0.61
RNF4-220ENST00000513578 SMG6Q86US8 1419 aaKnown RBP11.24□□□□□ -0.61
RNF4-220ENST00000513578 TOPAZ1Q8N9V7 1692 aa11.24□□□□□ -0.61
RNF4-220ENST00000513578 MON2Q7Z3U7 1717 aa11.23□□□□□ -0.61
RNF4-220ENST00000513578 A0A1W2PP64 1363 aa11.23□□□□□ -0.61
RNF4-220ENST00000513578 ITSN1Q15811 1721 aa11.23□□□□□ -0.61
RNF4-220ENST00000513578 CHD2O14647 1828 aaKnown RBP11.23□□□□□ -0.61
RNF4-220ENST00000513578 WASLO00401 505 aaPredicted RBP11.22□□□□□ -0.61
RNF4-220ENST00000513578 WAPLQ7Z5K2 1190 aa11.22□□□□□ -0.61
RNF4-220ENST00000513578 PTPRUQ92729 1446 aa11.22□□□□□ -0.61
RNF4-220ENST00000513578 SHPRHQ149N8 1683 aa11.21□□□□□ -0.61
RNF4-220ENST00000513578 CDC42BPGQ6DT37 1551 aa11.21□□□□□ -0.61
RNF4-220ENST00000513578 CPSF1Q10570 1443 aaKnown RBP11.21□□□□□ -0.61
RNF4-220ENST00000513578 ROBO2Q9HCK4 1378 aa11.21□□□□□ -0.61
RNF4-220ENST00000513578 PDE3BQ13370 1112 aa11.21□□□□□ -0.61
RNF4-220ENST00000513578 SAFB2Q14151 953 aaKnown RBP eCLIP11.21□□□□□ -0.61
RNF4-220ENST00000513578 HDGFL2Q7Z4V5 671 aaPredicted RBP11.2□□□□□ -0.62
RNF4-220ENST00000513578 MORC1Q86VD1 984 aa11.2□□□□□ -0.62
RNF4-220ENST00000513578 NGEFQ8N5V2 710 aa11.19□□□□□ -0.62
RNF4-220ENST00000513578 BCANQ96GW7 911 aa11.19□□□□□ -0.62
RNF4-220ENST00000513578 NUDCQ9Y266 331 aa11.18□□□□□ -0.62
RNF4-220ENST00000513578 EDC4Q6P2E9 1401 aaKnown RBP11.18□□□□□ -0.62
RNF4-220ENST00000513578 PPIP5K1Q6PFW1 1433 aa11.18□□□□□ -0.62
RNF4-220ENST00000513578 WDR43Q15061 677 aaKnown RBP eCLIP11.17□□□□□ -0.62
RNF4-220ENST00000513578 ERICH6BQ5W0A0 696 aa11.17□□□□□ -0.62
RNF4-220ENST00000513578 ANKLE2Q86XL3 938 aa11.17□□□□□ -0.62
RNF4-220ENST00000513578 CABP1Q9NZU7 370 aa11.17□□□□□ -0.62
RNF4-220ENST00000513578 ADAMTS8Q9UP79 889 aa11.17□□□□□ -0.62
RNF4-220ENST00000513578 SUPT16HQ9Y5B9 1047 aaKnown RBP11.17□□□□□ -0.62
RNF4-220ENST00000513578 CCDC61Q9Y6R9 512 aa11.17□□□□□ -0.62
RNF4-220ENST00000513578 NRKQ7Z2Y5 1582 aa11.16□□□□□ -0.62
RNF4-220ENST00000513578 FYB1O15117 783 aa11.16□□□□□ -0.62
RNF4-220ENST00000513578 NCBP3Q53F19 620 aaKnown RBP11.16□□□□□ -0.62
RNF4-220ENST00000513578 NUDT16Q96DE0 195 aaKnown RBP11.16□□□□□ -0.62
RNF4-220ENST00000513578 ZNF692Q9BU19 519 aaPredicted RBP11.16□□□□□ -0.62
RNF4-220ENST00000513578 AMOTL2Q9Y2J4 779 aa11.16□□□□□ -0.62
RNF4-220ENST00000513578 FMN2Q9NZ56 1722 aa11.15□□□□□ -0.62
RNF4-220ENST00000513578 MAP2P11137 1827 aaKnown RBP11.15□□□□□ -0.62
RNF4-220ENST00000513578 PLEKHG3A1L390 1219 aa11.15□□□□□ -0.62
RNF4-220ENST00000513578 NEFLP07196 543 aa11.15□□□□□ -0.62
RNF4-220ENST00000513578 SLC26A8Q96RN1 970 aa11.15□□□□□ -0.62
RNF4-220ENST00000513578 RNF123Q5XPI4 1314 aa11.14□□□□□ -0.63
RNF4-220ENST00000513578 MAPK8IP2Q13387 824 aaPredicted RBP11.14□□□□□ -0.63
RNF4-220ENST00000513578 CFAP53Q96M91 514 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms