RNA–Protein interactions for RNA: ENST00000513525.1

CCL28-203, Transcript of C-C motif chemokine ligand 28, humanhuman

TSL 1 (best) BASIC

Gene CCL28, Length 1,518 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCL28-203ENST00000513525 IFT172Q9UG01 1749 aa14.76□□□□□ -0.05
CCL28-203ENST00000513525 ZNF326Q5BKZ1 582 aaKnown RBP14.74□□□□□ -0.05
CCL28-203ENST00000513525 TRIM52Q96A61 297 aa14.74□□□□□ -0.05
CCL28-203ENST00000513525 SOCS7O14512 581 aa14.73□□□□□ -0.05
CCL28-203ENST00000513525 COL16A1Q07092 1604 aaPredicted RBP14.73□□□□□ -0.05
CCL28-203ENST00000513525 NALCNQ8IZF0 1738 aa14.73□□□□□ -0.05
CCL28-203ENST00000513525 AMOTL2Q9Y2J4 779 aa14.71□□□□□ -0.05
CCL28-203ENST00000513525 DCCP43146 1447 aa14.71□□□□□ -0.05
CCL28-203ENST00000513525 AHDC1Q5TGY3 1603 aaPredicted RBP14.71□□□□□ -0.06
CCL28-203ENST00000513525 LHX8Q68G74 356 aa14.71□□□□□ -0.06
CCL28-203ENST00000513525 SLAIN2Q9P270 581 aa14.71□□□□□ -0.06
CCL28-203ENST00000513525 METP08581 1390 aa14.7□□□□□ -0.06
CCL28-203ENST00000513525 PRR29P0C7W0 189 aa14.69□□□□□ -0.06
CCL28-203ENST00000513525 C19orf44Q9H6X5 657 aa14.69□□□□□ -0.06
CCL28-203ENST00000513525 SHPRHQ149N8 1683 aa14.69□□□□□ -0.06
CCL28-203ENST00000513525 RPGRIP1LQ68CZ1 1315 aa14.68□□□□□ -0.06
CCL28-203ENST00000513525 ACIN1Q9UKV3 1341 aaKnown RBP14.68□□□□□ -0.06
CCL28-203ENST00000513525 CADPS2Q86UW7 1296 aa14.68□□□□□ -0.06
CCL28-203ENST00000513525 NHSL1Q5SYE7 1610 aa14.68□□□□□ -0.06
CCL28-203ENST00000513525 C14orf37Q86TY3 774 aa14.67□□□□□ -0.06
CCL28-203ENST00000513525 PRAG1Q86YV5 1406 aa14.67□□□□□ -0.06
CCL28-203ENST00000513525 VGFO15240 615 aaPredicted RBP14.66□□□□□ -0.06
CCL28-203ENST00000513525 CHADLQ6NUI6 762 aa14.66□□□□□ -0.06
CCL28-203ENST00000513525 CCDC144AA2RUR9 1427 aa14.66□□□□□ -0.06
CCL28-203ENST00000513525 PTCH1Q13635 1447 aa14.65□□□□□ -0.06
CCL28-203ENST00000513525 ADGRL3Q9HAR2 1447 aa14.65□□□□□ -0.06
CCL28-203ENST00000513525 ATF3P18847 181 aa14.65□□□□□ -0.06
CCL28-203ENST00000513525 SPATA31E1Q6ZUB1 1445 aa14.64□□□□□ -0.07
CCL28-203ENST00000513525 KNDC1Q76NI1 1749 aa14.64□□□□□ -0.07
CCL28-203ENST00000513525 MPHOSPH9Q99550 1183 aa14.64□□□□□ -0.07
CCL28-203ENST00000513525 SETD5Q9C0A6 1442 aa14.64□□□□□ -0.07
CCL28-203ENST00000513525 MST1RQ04912 1400 aa14.63□□□□□ -0.07
CCL28-203ENST00000513525 JCADQ9P266 1359 aa14.63□□□□□ -0.07
CCL28-203ENST00000513525 LAMC1P11047 1609 aa14.63□□□□□ -0.07
CCL28-203ENST00000513525 ASXL1Q8IXJ9 1541 aa14.62□□□□□ -0.07
CCL28-203ENST00000513525 HRCP23327 699 aa14.61□□□□□ -0.07
CCL28-203ENST00000513525 ANKRD30BQ9BXX2 1392 aa14.59□□□□□ -0.07
CCL28-203ENST00000513525 BRINP3Q76B58 766 aa14.59□□□□□ -0.07
CCL28-203ENST00000513525 RGS17Q9UGC6 210 aaPredicted RBP14.59□□□□□ -0.07
CCL28-203ENST00000513525 ROBO2Q9HCK4 1378 aa14.58□□□□□ -0.07
CCL28-203ENST00000513525 RAB3GAP2Q9H2M9 1393 aa14.57□□□□□ -0.08
CCL28-203ENST00000513525 PIK3C2GO75747 1445 aa14.57□□□□□ -0.08
CCL28-203ENST00000513525 CDC42BPGQ6DT37 1551 aa14.57□□□□□ -0.08
CCL28-203ENST00000513525 SPATA31A6Q5VVP1 1343 aa14.56□□□□□ -0.08
CCL28-203ENST00000513525 TECPR2O15040 1411 aa14.56□□□□□ -0.08
CCL28-203ENST00000513525 LRP6O75581 1613 aa14.56□□□□□ -0.08
CCL28-203ENST00000513525 ADGRF5Q8IZF2 1346 aa14.55□□□□□ -0.08
CCL28-203ENST00000513525 MYOM2P54296 1465 aa14.55□□□□□ -0.08
CCL28-203ENST00000513525 C1orf167Q5SNV9 1468 aa14.54□□□□□ -0.08
CCL28-203ENST00000513525 NRXN1Q9ULB1 1477 aa14.54□□□□□ -0.08
CCL28-203ENST00000513525 CLCN6P51797 869 aa14.54□□□□□ -0.08
CCL28-203ENST00000513525 RGL3Q3MIN7 710 aa14.54□□□□□ -0.08
CCL28-203ENST00000513525 FMN2Q9NZ56 1722 aa14.53□□□□□ -0.08
CCL28-203ENST00000513525 CD44P16070 742 aaKnown RBP14.52□□□□□ -0.08
CCL28-203ENST00000513525 LRPPRCP42704 1394 aaKnown RBP14.51□□□□□ -0.09
CCL28-203ENST00000513525 RGPD8O14715 1765 aaPredicted RBP14.51□□□□□ -0.09
CCL28-203ENST00000513525 ABCC11Q96J66 1382 aa14.51□□□□□ -0.09
CCL28-203ENST00000513525 POTEAQ6S8J7 498 aa14.5□□□□□ -0.09
CCL28-203ENST00000513525 COL22A1Q8NFW1 1626 aaPredicted RBP14.49□□□□□ -0.09
CCL28-203ENST00000513525 YTHDC2Q9H6S0 1430 aaKnown RBP14.49□□□□□ -0.09
CCL28-203ENST00000513525 MARF1Q9Y4F3 1742 aaKnown RBP14.49□□□□□ -0.09
CCL28-203ENST00000513525 LRRC59Q96AG4 307 aaKnown RBP14.48□□□□□ -0.09
CCL28-203ENST00000513525 KIF1AQ12756 1690 aa14.48□□□□□ -0.09
CCL28-203ENST00000513525 PNPLA6Q8IY17 1366 aa14.47□□□□□ -0.09
CCL28-203ENST00000513525 C14orf93Q9H972 538 aaKnown RBP14.46□□□□□ -0.1
CCL28-203ENST00000513525 FARP1Q9Y4F1 1045 aaPredicted RBP14.46□□□□□ -0.1
CCL28-203ENST00000513525 SOS2Q07890 1332 aaPredicted RBP14.45□□□□□ -0.1
CCL28-203ENST00000513525 DLC1Q96QB1 1528 aa14.45□□□□□ -0.1
CCL28-203ENST00000513525 MEX3CQ5U5Q3 659 aaKnown RBP14.45□□□□□ -0.1
CCL28-203ENST00000513525 TMEM132EQ6IEE7 984 aa14.45□□□□□ -0.1
CCL28-203ENST00000513525 DDX17Q92841 729 aaKnown RBP14.45□□□□□ -0.1
CCL28-203ENST00000513525 ORAI2Q96SN7 254 aa14.45□□□□□ -0.1
CCL28-203ENST00000513525 SIRT1Q96EB6 747 aa14.44□□□□□ -0.1
CCL28-203ENST00000513525 STK26Q9P289 416 aa14.44□□□□□ -0.1
CCL28-203ENST00000513525 ADGRB1O14514 1584 aa14.44□□□□□ -0.1
CCL28-203ENST00000513525 PLEKHH1Q9ULM0 1364 aa14.44□□□□□ -0.1
CCL28-203ENST00000513525 PXDNQ92626 1479 aa14.43□□□□□ -0.1
CCL28-203ENST00000513525 ZNF772Q68DY9 489 aaPredicted RBP14.43□□□□□ -0.1
CCL28-203ENST00000513525 WAPLQ7Z5K2 1190 aa14.43□□□□□ -0.1
CCL28-203ENST00000513525 ADGRB2O60241 1585 aa14.43□□□□□ -0.1
CCL28-203ENST00000513525 DHX57Q6P158 1386 aaKnown RBP14.43□□□□□ -0.1
CCL28-203ENST00000513525 KIAA1210Q9ULL0 1709 aa14.41□□□□□ -0.1
CCL28-203ENST00000513525 NPHP3Q7Z494 1330 aa14.41□□□□□ -0.1
CCL28-203ENST00000513525 NUTM2BA6NNL0 878 aaPredicted RBP14.41□□□□□ -0.1
CCL28-203ENST00000513525 NUTM2EB1AL46 878 aaPredicted RBP14.41□□□□□ -0.1
CCL28-203ENST00000513525 CFAP70Q5T0N1 1121 aa14.41□□□□□ -0.1
CCL28-203ENST00000513525 NUTM2AQ8IVF1 878 aaPredicted RBP14.41□□□□□ -0.1
CCL28-203ENST00000513525 ARHGEF28Q8N1W1 1705 aaKnown RBP14.4□□□□□ -0.1
CCL28-203ENST00000513525 USP32Q8NFA0 1604 aa14.4□□□□□ -0.1
CCL28-203ENST00000513525 ZEB1P37275 1124 aaPredicted RBP14.4□□□□□ -0.1
CCL28-203ENST00000513525 STAC3Q96MF2 364 aa14.4□□□□□ -0.1
CCL28-203ENST00000513525 CDK12Q9NYV4 1490 aaPredicted RBP14.39□□□□□ -0.11
CCL28-203ENST00000513525 ESCO1Q5FWF5 840 aa14.39□□□□□ -0.11
CCL28-203ENST00000513525 AFF2P51816 1311 aa14.38□□□□□ -0.11
CCL28-203ENST00000513525 POTEIP0CG38 1075 aa14.37□□□□□ -0.11
CCL28-203ENST00000513525 ABCA3Q99758 1704 aa14.37□□□□□ -0.11
CCL28-203ENST00000513525 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.37□□□□□ -0.11
CCL28-203ENST00000513525 DCBLD2Q96PD2 775 aa14.36□□□□□ -0.11
CCL28-203ENST00000513525 ITSN1Q15811 1721 aa14.36□□□□□ -0.11
CCL28-203ENST00000513525 DCAF11Q8TEB1 546 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms