RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 MYBBP1AQ9BQG0 1328 aaKnown RBP10.55□□□□□ -0.72
LIMCH1-218ENST00000513024 ANKRD30AQ9BXX3 1397 aa10.54□□□□□ -0.72
LIMCH1-218ENST00000513024 SSR1P43307 286 aaKnown RBP10.54□□□□□ -0.72
LIMCH1-218ENST00000513024 GPATCH3Q96I76 525 aa10.54□□□□□ -0.72
LIMCH1-218ENST00000513024 ST20-MTHFSA0A0A6YYL1 179 aa10.54□□□□□ -0.72
LIMCH1-218ENST00000513024 TPD52L1Q16890 204 aaPredicted RBP10.54□□□□□ -0.72
LIMCH1-218ENST00000513024 AMPHP49418 695 aa10.54□□□□□ -0.72
LIMCH1-218ENST00000513024 EIF3AQ14152 1382 aaKnown RBP10.54□□□□□ -0.72
LIMCH1-218ENST00000513024 ERICH4A6NGS2 130 aa10.54□□□□□ -0.72
LIMCH1-218ENST00000513024 PDCL2Q8N4E4 241 aa10.54□□□□□ -0.72
LIMCH1-218ENST00000513024 PSME1Q06323 249 aa10.53□□□□□ -0.72
LIMCH1-218ENST00000513024 AXDND1Q5T1B0 1012 aaPredicted RBP10.53□□□□□ -0.72
LIMCH1-218ENST00000513024 UQCRHLA0A096LP55 91 aa10.53□□□□□ -0.72
LIMCH1-218ENST00000513024 H3BQV1 296 aa10.53□□□□□ -0.72
LIMCH1-218ENST00000513024 UQCRHP07919 91 aa10.53□□□□□ -0.72
LIMCH1-218ENST00000513024 IFFO2Q5TF58 517 aa10.53□□□□□ -0.72
LIMCH1-218ENST00000513024 FYCO1Q9BQS8 1478 aa10.53□□□□□ -0.72
LIMCH1-218ENST00000513024 CGNL1Q0VF96 1302 aa10.53□□□□□ -0.72
LIMCH1-218ENST00000513024 LAMC3Q9Y6N6 1575 aa10.53□□□□□ -0.72
LIMCH1-218ENST00000513024 VGFO15240 615 aaPredicted RBP10.53□□□□□ -0.72
LIMCH1-218ENST00000513024 RAD54L2Q9Y4B4 1467 aa10.52□□□□□ -0.72
LIMCH1-218ENST00000513024 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.52□□□□□ -0.72
LIMCH1-218ENST00000513024 THEMISQ8N1K5 641 aaPredicted RBP10.52□□□□□ -0.72
LIMCH1-218ENST00000513024 CT47B1P0C2W7 299 aaPredicted RBP10.52□□□□□ -0.73
LIMCH1-218ENST00000513024 CCDC173Q0VFZ6 552 aa10.52□□□□□ -0.73
LIMCH1-218ENST00000513024 PANK3Q9H999 370 aa10.52□□□□□ -0.73
LIMCH1-218ENST00000513024 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.52□□□□□ -0.73
LIMCH1-218ENST00000513024 PPP1R1BQ9UD71 204 aaPredicted RBP10.52□□□□□ -0.73
LIMCH1-218ENST00000513024 HFM1A2PYH4 1435 aa10.52□□□□□ -0.73
LIMCH1-218ENST00000513024 ZKSCAN2Q63HK3 967 aa10.52□□□□□ -0.73
LIMCH1-218ENST00000513024 E9PSI1 815 aa10.52□□□□□ -0.73
LIMCH1-218ENST00000513024 ZHX1Q9UKY1 873 aaPredicted RBP10.51□□□□□ -0.73
LIMCH1-218ENST00000513024 CTDP1Q9Y5B0 961 aaPredicted RBP10.51□□□□□ -0.73
LIMCH1-218ENST00000513024 KIF15Q9NS87 1388 aa10.51□□□□□ -0.73
LIMCH1-218ENST00000513024 APAF1O14727 1248 aa10.51□□□□□ -0.73
LIMCH1-218ENST00000513024 FAM184AQ8NB25 1140 aa10.51□□□□□ -0.73
LIMCH1-218ENST00000513024 TOMM22Q9NS69 142 aa10.51□□□□□ -0.73
LIMCH1-218ENST00000513024 TNNT1P13805 278 aa10.51□□□□□ -0.73
LIMCH1-218ENST00000513024 SKIDA1Q1XH10 827 aa10.51□□□□□ -0.73
LIMCH1-218ENST00000513024 PROSER2Q86WR7 435 aaPredicted RBP10.51□□□□□ -0.73
LIMCH1-218ENST00000513024 PRDM10Q9NQV6 1147 aa10.51□□□□□ -0.73
LIMCH1-218ENST00000513024 PCF11O94913 1555 aaKnown RBP10.5□□□□□ -0.73
LIMCH1-218ENST00000513024 FRAT2O75474 233 aaPredicted RBP10.5□□□□□ -0.73
LIMCH1-218ENST00000513024 HMGB1P09429 215 aaKnown RBP10.5□□□□□ -0.73
LIMCH1-218ENST00000513024 ESPNB1AK53 854 aa10.5□□□□□ -0.73
LIMCH1-218ENST00000513024 WDHD1O75717 1129 aaPredicted RBP10.5□□□□□ -0.73
LIMCH1-218ENST00000513024 MCTP1Q6DN14 999 aa10.5□□□□□ -0.73
LIMCH1-218ENST00000513024 RNF214Q8ND24 703 aa10.5□□□□□ -0.73
LIMCH1-218ENST00000513024 CENPHQ9H3R5 247 aa10.5□□□□□ -0.73
LIMCH1-218ENST00000513024 NAIPQ13075 1403 aa10.5□□□□□ -0.73
LIMCH1-218ENST00000513024 TRIM34Q9BYJ4 488 aa10.49□□□□□ -0.73
LIMCH1-218ENST00000513024 GAPVD1Q14C86 1478 aa10.49□□□□□ -0.73
LIMCH1-218ENST00000513024 DNAJC2Q99543 621 aaKnown RBP10.49□□□□□ -0.73
LIMCH1-218ENST00000513024 EIF3JO75822 258 aaKnown RBP10.49□□□□□ -0.73
LIMCH1-218ENST00000513024 MYOM3Q5VTT5 1437 aa10.49□□□□□ -0.73
LIMCH1-218ENST00000513024 GRIN2BQ13224 1484 aa10.49□□□□□ -0.73
LIMCH1-218ENST00000513024 GTF2A1P52655 376 aaPredicted RBP10.48□□□□□ -0.73
LIMCH1-218ENST00000513024 CAGE1Q8TC20 777 aa10.48□□□□□ -0.73
LIMCH1-218ENST00000513024 NOL10Q9BSC4 688 aaKnown RBP10.48□□□□□ -0.73
LIMCH1-218ENST00000513024 C1orf141Q5JVX7 400 aa10.48□□□□□ -0.73
LIMCH1-218ENST00000513024 CCDC112Q8NEF3 446 aa10.48□□□□□ -0.73
LIMCH1-218ENST00000513024 ANKRD20A12PQ8NF67 263 aa10.48□□□□□ -0.73
LIMCH1-218ENST00000513024 CCDC184Q52MB2 194 aa10.48□□□□□ -0.73
LIMCH1-218ENST00000513024 CAVIN1Q6NZI2 390 aaKnown RBP10.48□□□□□ -0.73
LIMCH1-218ENST00000513024 C22orf23Q9BZE7 217 aa10.48□□□□□ -0.73
LIMCH1-218ENST00000513024 FBXO3Q9UK99 471 aa10.47□□□□□ -0.73
LIMCH1-218ENST00000513024 REC8O95072 547 aa10.47□□□□□ -0.73
LIMCH1-218ENST00000513024 PIP4K2BP78356 416 aa10.47□□□□□ -0.73
LIMCH1-218ENST00000513024 BICD2Q8TD16 824 aa10.47□□□□□ -0.73
LIMCH1-218ENST00000513024 PTPRKQ15262 1439 aa10.47□□□□□ -0.73
LIMCH1-218ENST00000513024 AQRO60306 1485 aaKnown RBP eCLIP10.47□□□□□ -0.73
LIMCH1-218ENST00000513024 TRAK2O60296 914 aa10.47□□□□□ -0.73
LIMCH1-218ENST00000513024 NUCB2P80303 420 aa10.47□□□□□ -0.73
LIMCH1-218ENST00000513024 EFCAB5A4FU69 1503 aa10.47□□□□□ -0.73
LIMCH1-218ENST00000513024 NCOA2Q15596 1464 aa10.46□□□□□ -0.73
LIMCH1-218ENST00000513024 ANKLE2Q86XL3 938 aa10.46□□□□□ -0.73
LIMCH1-218ENST00000513024 FBXW7Q969H0 707 aa10.46□□□□□ -0.73
LIMCH1-218ENST00000513024 CBX1P83916 185 aa10.46□□□□□ -0.74
LIMCH1-218ENST00000513024 PAXIP1Q6ZW49 1069 aaPredicted RBP10.46□□□□□ -0.74
LIMCH1-218ENST00000513024 LNPKQ9C0E8 428 aa10.46□□□□□ -0.74
LIMCH1-218ENST00000513024 VPS37CA5D8V6 355 aaPredicted RBP10.46□□□□□ -0.74
LIMCH1-218ENST00000513024 SASS6Q6UVJ0 657 aa10.46□□□□□ -0.74
LIMCH1-218ENST00000513024 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.46□□□□□ -0.74
LIMCH1-218ENST00000513024 CLGNO14967 610 aa10.45□□□□□ -0.74
LIMCH1-218ENST00000513024 TICAM2Q86XR7 235 aa10.45□□□□□ -0.74
LIMCH1-218ENST00000513024 ANO2Q9NQ90 1003 aa10.45□□□□□ -0.74
LIMCH1-218ENST00000513024 GOLGA6L10A6NI86 522 aa10.45□□□□□ -0.74
LIMCH1-218ENST00000513024 LMOD3Q0VAK6 560 aa10.45□□□□□ -0.74
LIMCH1-218ENST00000513024 CHMP4CQ96CF2 233 aa10.45□□□□□ -0.74
LIMCH1-218ENST00000513024 PAIP2Q9BPZ3 127 aaKnown RBP10.45□□□□□ -0.74
LIMCH1-218ENST00000513024 CCP110O43303 1012 aa10.45□□□□□ -0.74
LIMCH1-218ENST00000513024 ERLIN1O75477 346 aa10.45□□□□□ -0.74
LIMCH1-218ENST00000513024 NUTM2DQ5VT03 806 aaPredicted RBP10.45□□□□□ -0.74
LIMCH1-218ENST00000513024 TTC5Q8N0Z6 440 aa10.45□□□□□ -0.74
LIMCH1-218ENST00000513024 TIGD1Q96MW7 591 aa10.45□□□□□ -0.74
LIMCH1-218ENST00000513024 PLCD3Q8N3E9 789 aa10.44□□□□□ -0.74
LIMCH1-218ENST00000513024 FAM107BQ9H098 131 aa10.44□□□□□ -0.74
LIMCH1-218ENST00000513024 DDX19BQ9UMR2 479 aa10.44□□□□□ -0.74
LIMCH1-218ENST00000513024 POLA1P09884 1462 aaPredicted RBP10.44□□□□□ -0.74
LIMCH1-218ENST00000513024 AMOTL1Q8IY63 956 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms