RNA–Protein interactions for RNA: ENST00000512844.5

CHD1-209, Transcript of chromodomain helicase DNA binding protein 1, humanhuman

TSL 5

Gene CHD1, Length 848 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1-209ENST00000512844 NUTM2AQ8IVF1 878 aaPredicted RBP11.55□□□□□ -0.56
CHD1-209ENST00000512844 ZBTB3Q9H5J0 574 aa11.54□□□□□ -0.56
CHD1-209ENST00000512844 ITGBL1O95965 494 aaPredicted RBP11.53□□□□□ -0.56
CHD1-209ENST00000512844 SPDYE5A6NIY4 337 aa11.52□□□□□ -0.57
CHD1-209ENST00000512844 MTMR2Q13614 643 aa11.52□□□□□ -0.57
CHD1-209ENST00000512844 SPSB2Q99619 263 aa11.52□□□□□ -0.57
CHD1-209ENST00000512844 LIMD1Q9UGP4 676 aa11.52□□□□□ -0.57
CHD1-209ENST00000512844 SALL2Q9Y467 1007 aaPredicted RBP11.52□□□□□ -0.57
CHD1-209ENST00000512844 TUSC1Q2TAM9 212 aa11.51□□□□□ -0.57
CHD1-209ENST00000512844 PRPF38BQ5VTL8 546 aaKnown RBP11.51□□□□□ -0.57
CHD1-209ENST00000512844 ZNF516Q92618 1163 aa11.51□□□□□ -0.57
CHD1-209ENST00000512844 PLA2G2EQ9NZK7 142 aa11.51□□□□□ -0.57
CHD1-209ENST00000512844 ADH1BP00325 375 aa11.5□□□□□ -0.57
CHD1-209ENST00000512844 GGCXP38435 758 aa11.5□□□□□ -0.57
CHD1-209ENST00000512844 TLL1O43897 1013 aa11.49□□□□□ -0.57
CHD1-209ENST00000512844 BRICD5Q6PL45 260 aa11.49□□□□□ -0.57
CHD1-209ENST00000512844 RNF19BQ6ZMZ0 732 aa11.49□□□□□ -0.57
CHD1-209ENST00000512844 RETREG3Q86VR2 466 aa11.49□□□□□ -0.57
CHD1-209ENST00000512844 USB1Q9BQ65 265 aaKnown RBP11.49□□□□□ -0.57
CHD1-209ENST00000512844 PCDHGC3Q9UN70 934 aa11.49□□□□□ -0.57
CHD1-209ENST00000512844 PCDHB15Q9Y5E8 787 aa11.48□□□□□ -0.57
CHD1-209ENST00000512844 PROCA1Q8NCQ7 364 aaPredicted RBP11.47□□□□□ -0.57
CHD1-209ENST00000512844 TSC1Q92574 1164 aa11.47□□□□□ -0.57
CHD1-209ENST00000512844 HRCP23327 699 aa11.46□□□□□ -0.57
CHD1-209ENST00000512844 SLC6A16Q9GZN6 736 aa11.46□□□□□ -0.57
CHD1-209ENST00000512844 HELBQ8NG08 1087 aaPredicted RBP11.45□□□□□ -0.58
CHD1-209ENST00000512844 CABLES1Q8TDN4 633 aa11.45□□□□□ -0.58
CHD1-209ENST00000512844 SYMPKQ92797 1274 aaKnown RBP11.45□□□□□ -0.58
CHD1-209ENST00000512844 THAP11Q96EK4 314 aa11.45□□□□□ -0.58
CHD1-209ENST00000512844 QPCTQ16769 361 aa11.44□□□□□ -0.58
CHD1-209ENST00000512844 MSS51Q4VC12 460 aa11.44□□□□□ -0.58
CHD1-209ENST00000512844 LILRB3O75022 631 aa11.43□□□□□ -0.58
CHD1-209ENST00000512844 NKX2-3Q8TAU0 364 aa11.43□□□□□ -0.58
CHD1-209ENST00000512844 PRR7Q8TB68 274 aa11.43□□□□□ -0.58
CHD1-209ENST00000512844 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.43□□□□□ -0.58
CHD1-209ENST00000512844 IFFO2Q5TF58 517 aa11.42□□□□□ -0.58
CHD1-209ENST00000512844 S1PR4O95977 384 aa11.39□□□□□ -0.59
CHD1-209ENST00000512844 JUNDP17535 347 aa11.38□□□□□ -0.59
CHD1-209ENST00000512844 RTL5Q5HYW3 569 aaPredicted RBP11.38□□□□□ -0.59
CHD1-209ENST00000512844 PPP2R2DQ66LE6 453 aa11.38□□□□□ -0.59
CHD1-209ENST00000512844 FAM160A2Q8N612 972 aaPredicted RBP11.38□□□□□ -0.59
CHD1-209ENST00000512844 AP1G2O75843 785 aa11.37□□□□□ -0.59
CHD1-209ENST00000512844 RFC5P40937 340 aa11.37□□□□□ -0.59
CHD1-209ENST00000512844 TMEM259Q4ZIN3 620 aa11.37□□□□□ -0.59
CHD1-209ENST00000512844 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.37□□□□□ -0.59
CHD1-209ENST00000512844 CFAP99D6REC4 459 aa11.36□□□□□ -0.59
CHD1-209ENST00000512844 DESI1Q6ICB0 168 aa11.36□□□□□ -0.59
CHD1-209ENST00000512844 PRDM9Q9NQV7 894 aa11.36□□□□□ -0.59
CHD1-209ENST00000512844 PPP1R18Q6NYC8 613 aa11.35□□□□□ -0.59
CHD1-209ENST00000512844 DXOO77932 396 aaKnown RBP11.34□□□□□ -0.59
CHD1-209ENST00000512844 MMP16P51512 607 aa11.34□□□□□ -0.59
CHD1-209ENST00000512844 CCDC24Q8N4L8 307 aa11.34□□□□□ -0.59
CHD1-209ENST00000512844 A0A0G2JS52 829 aa11.33□□□□□ -0.6
CHD1-209ENST00000512844 PTPRNQ16849 979 aa11.32□□□□□ -0.6
CHD1-209ENST00000512844 NUDT12Q9BQG2 462 aa11.32□□□□□ -0.6
CHD1-209ENST00000512844 FCF1Q9Y324 198 aaKnown RBP11.32□□□□□ -0.6
CHD1-209ENST00000512844 RNF223E7ERA6 249 aa11.31□□□□□ -0.6
CHD1-209ENST00000512844 ANKLE1Q8NAG6 615 aa11.31□□□□□ -0.6
CHD1-209ENST00000512844 APBB1O00213 710 aa11.3□□□□□ -0.6
CHD1-209ENST00000512844 ZBTB24O43167 697 aaPredicted RBP11.3□□□□□ -0.6
CHD1-209ENST00000512844 CCNYL3P0C7X3 344 aa11.3□□□□□ -0.6
CHD1-209ENST00000512844 CTHP32929 405 aa11.3□□□□□ -0.6
CHD1-209ENST00000512844 LYPD8Q6UX82 237 aa11.29□□□□□ -0.6
CHD1-209ENST00000512844 PPEF1O14829 653 aaPredicted RBP11.28□□□□□ -0.6
CHD1-209ENST00000512844 USP17L8P0C7I0 530 aa11.28□□□□□ -0.6
CHD1-209ENST00000512844 BANK1Q8NDB2 785 aa11.28□□□□□ -0.6
CHD1-209ENST00000512844 CTDSPL2Q05D32 466 aa11.27□□□□□ -0.61
CHD1-209ENST00000512844 PNMA1Q8ND90 353 aa11.27□□□□□ -0.61
CHD1-209ENST00000512844 FBXO31Q5XUX0 539 aaPredicted RBP11.25□□□□□ -0.61
CHD1-209ENST00000512844 PRM3Q9NNZ6 103 aa11.25□□□□□ -0.61
CHD1-209ENST00000512844 PER1O15534 1290 aaPredicted RBP11.23□□□□□ -0.61
CHD1-209ENST00000512844 KCNH2Q12809 1159 aa11.23□□□□□ -0.61
CHD1-209ENST00000512844 FLIIQ13045 1269 aa11.22□□□□□ -0.61
CHD1-209ENST00000512844 LRRN4Q8WUT4 740 aa11.22□□□□□ -0.61
CHD1-209ENST00000512844 EVA1BQ9NVM1 165 aa11.22□□□□□ -0.61
CHD1-209ENST00000512844 ARMC2Q8NEN0 867 aa11.21□□□□□ -0.61
CHD1-209ENST00000512844 CD2BP2O95400 341 aaKnown RBP11.2□□□□□ -0.62
CHD1-209ENST00000512844 SLC19A1P41440 591 aa11.19□□□□□ -0.62
CHD1-209ENST00000512844 RPIAP49247 311 aa11.19□□□□□ -0.62
CHD1-209ENST00000512844 MAP10Q9P2G4 905 aa11.19□□□□□ -0.62
CHD1-209ENST00000512844 PRKD2Q9BZL6 878 aa11.18□□□□□ -0.62
CHD1-209ENST00000512844 UNC93B1Q9H1C4 597 aa11.18□□□□□ -0.62
CHD1-209ENST00000512844 GTF3C3Q9Y5Q9 886 aa11.18□□□□□ -0.62
CHD1-209ENST00000512844 RGS20O76081 388 aa11.17□□□□□ -0.62
CHD1-209ENST00000512844 F12P00748 615 aaPredicted RBP11.17□□□□□ -0.62
CHD1-209ENST00000512844 NR6A1Q15406 480 aa11.16□□□□□ -0.62
CHD1-209ENST00000512844 NBPF14Q5TI25 921 aa11.16□□□□□ -0.62
CHD1-209ENST00000512844 V9GY48 417 aaPredicted RBP11.16□□□□□ -0.62
CHD1-209ENST00000512844 SOCS7O14512 581 aa11.15□□□□□ -0.62
CHD1-209ENST00000512844 TRIM32Q13049 653 aa11.15□□□□□ -0.62
CHD1-209ENST00000512844 SNRKQ9NRH2 765 aa11.15□□□□□ -0.62
CHD1-209ENST00000512844 MCM6Q14566 821 aa11.14□□□□□ -0.63
CHD1-209ENST00000512844 PLA2G2CQ5R387 149 aa11.14□□□□□ -0.63
CHD1-209ENST00000512844 HMX1Q9NP08 348 aaPredicted RBP11.14□□□□□ -0.63
CHD1-209ENST00000512844 NDUFB9Q9Y6M9 179 aa11.14□□□□□ -0.63
CHD1-209ENST00000512844 RAD21O60216 631 aa11.13□□□□□ -0.63
CHD1-209ENST00000512844 UBTFP17480 764 aaKnown RBP11.13□□□□□ -0.63
CHD1-209ENST00000512844 PTCRAQ6ISU1 281 aaPredicted RBP11.13□□□□□ -0.63
CHD1-209ENST00000512844 MTMR14Q8NCE2 650 aa11.13□□□□□ -0.63
CHD1-209ENST00000512844 AGERQ15109 404 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 103.8 ms